Glycosylation and Specific Deamidation of Ribonuclease B Affect the Formation of Three-dimensional Domain-swapped Oligomers

Journal of Biological Chemistry

Volumn 278, Issue 47, 2003, Pages 46241-46251

  Gotte, Giovanni ^a   Libonati, Massimo ^a   Laurents, Douglas V ^b  

^a UNIVERSITY OF VERONA   (Italy)

^b INSTITUTO DE QUÍMICA FÍSICA ROCASOLANO   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATOGRAPHIC ANALYSIS; ENZYME KINETICS; ION EXCHANGE; MASS SPECTROMETRY; NUCLEAR MAGNETIC RESONANCE; OLIGOMERS; POLYETHYLENE GLYCOLS; POSITIVE IONS; RNA;

PRODUCTIVE COLLISIONS;

BIOCHEMISTRY;

ALCOHOL; AMINE; ASPARAGINE; CARBOHYDRATE; DIMER; GLYCOSIDASE; ISOENZYME; MACROGOL; RIBONUCLEASE; RIBONUCLEASE A;

ARTICLE; COMMERCIAL PHENOMENA; DEAMINATION; ELUTION; FREEZE DRYING; GLYCOSYLATION; HIGH TEMPERATURE; ION EXCHANGE CHROMATOGRAPHY; MASS SPECTROMETRY; OLIGOMERIZATION; PRIORITY JOURNAL; PROTEIN DOMAIN; STEREOCHEMISTRY; THERMOSTABILITY;

AMIDES; CHROMATOGRAPHY, ION EXCHANGE; DIMERIZATION; FREEZE DRYING; FUNGAL PROTEINS; GLYCOSIDE HYDROLASES; GLYCOSYLATION; PROTEIN STRUCTURE, TERTIARY; RIBONUCLEASE, PANCREATIC; RIBONUCLEASES; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 0344875630     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M308470200     Document Type: Article

References (65)

1. Crestfield, A. M., Stein, W. H., and Moore, S. (1962) Arch. Biochem. Biophys. Suppl. 1, 217-222
2. Bennet, M. J., Choe, S., and Eisenberg, D. (1994) Protein Sci. 3, 1444-1463
3. Liu, Y., and Eisenberg, D. (2002) Protein Sci. 11, 1285-1299
4. Cohen, F. E., and Prusiner, S. B. (1998) Annu. Rev. Biochem. 67, 793-819
5. Janowski, R., Kozak, M., Jankowska, E., Grzonka, Z., Grubb, A., Abrahamson, A., and Jaskolski, M. (2001) Nat. Struct. Biol. 8, 316-320
6. Knaus, K. J., Morillas, M., Swietnicki, W., Malone, M., Surewicz, W. K., and Yee, V. C. (2001) Nat. Struct. Biol. 8, 770-774
7. Gotte, G., Bertoldi, M., and Libonati, M. (1999) Eur. J. Biochem. 265,680-687
8. Liu, Y., Hart, P. J., Schlunegger, M. P., and Eisenberg, D. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 3437-3442
9. Liu, Y., Gotte, G., Libonati, M., and Eisenberg, D. (2001) Nat. Struct. Biol. 8, 211-214
10. Nenci, A., Gotte, G., Bertoldi, M., and Libonati, M. (2001) Protein Sci. 10, 2017-2027
11. Liu, Y., Gotte, G., Libonati, M., and Eisenberg, D. (2002) Protein Sci. 11, 371-380
12. Gotte, G., Vottariello, F., and Libonati, M. (2003) J. Biol. Chem. 278, 10763-10769
13. Marzotto, A., and Galzigna, L. (1970) Arch. Biochem. Biophys. 137, 373-378
14. Park, C., and Raines, R. T. (2000) Protein Sci. 9, 2026-2033
15. Plummer, T. H. J., and Hirs, C. H. W. (1963) J. Biol. Chem. 238, 1396-1401
16. Fu, D., Chen, L., and O'Neill, R. A. (1994) Carbohydr. Res. 261, 173-186
17. Kawasaki, N., Ohta, M., Hyuga, S., Hashimoto, O., and Hayakawa, T. (1999) Anal. Biochem. 269, 297-303
18. González, L., Bruix, M., Diaz-Mauriño, T., Feizi, T., Rico, M., Solís, D., and Jiménez-Barbero, J. (2000) Arch. Biochem. Biophys. 383, 17-27
19. Di Donato, A., Ciardiello, M. A., de Nigris, M., Piccoli, R., Mazzarella, L., and D'Alessio, G. (1993) J. Biol. Chem. 268, 4745-4751
20. Williams, R. L., Green, S. M., and McPherson, A. (1987) J. Biol. Chem. 262, 16020-16031
21. Joao, H. C., Scragg, I. G., and Dwek, R. A. (1992) FEBS Lett. 307, 343-346
22. Solís, D., Bruix, M., González, L., Dí az-Mauriño, T., Rico, M., Jiménez-Barbero J., and Feizi, T. (2001) Glycobiology 11, 31-36
23. Arnold, U., and Ulbrich-Hofmann, R. (1997) Biochemistry 36, 2166-2172
24. Joao, J., and Dwek, R. (1993) Eur. J. Biochem. 21, 239-244
25. Wang, C., Eufemi, M., Turano, C., and Giartosio, A. (1996) Biochemistry 35, 7299-7307
26. Narhi, L. O., Arakawa, T., Aoki, K., Wen, J., Elliott, S., Boone, T., and Cheetham, J. (2001) Protein Eng. 14, 135-140
27. Chen, P. Y. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 12633-12638
28. Matousek, J., Pouckova, P., Soucek, J., and Skvor, J. (2002) J. Controlled Release 82, 29-37
29. Dubois, M., Gilles, K. A., Hamilton, J. K., Rebers, P. A., and Smith, F. (1956) Anal. Chem. 28, 350-356
30. Kunitz, M. (1946) J. Biol. Chem. 164, 563-568
31. Libonati, M., and Sorrentino, S. (2001) Methods Enzymol. 341, 234-248
32. Pace, C. N., Shirley, B. A., and Thomson, J. A. (1989) in Protein Structure: A Practical Approach (Creighton, T. E.. ed) pp. 311-330, IRL Press, New York
33. Kumar, A., Ernst, R. R., and Wüthrich, K. (1980) Biochem. Biophys. Res. Commun. 95, 1-6
34. Rico, M., Santoro, J., González, C., Bruix, M., Neira, J. L., and Nieto, J. L. (1993) Appl. Magn. Reson. 4, 385-415
35. Libonati, M., Bertoldi, M., and Sorrentino, S. (1996) Biochem. J. 318, 287-290
36. Pace, C. N., and Laurents, D. V. (1989) Biochemistry 28, 2520-2525
37. Brown, L. R., and Bradbury, J. H. (1975) Eur. J. Biochem. 54, 219-227
38. Eaker, D. L., King, T. P., and Craig, L. C. (1965) Biochemistry 4, 1479-1486
39. Bornstein, P., and Balian, G. (1977) Methods Enzymol. 47, 132-145
40. Capasso, S., Mazzarella, L., Sica, F., and Zagari, A. (1989) Peptide Res. 2, 195-200
41. Thannhauser, T. W., and Scheraga, H. A. (1985) Biochemistry 24, 7681-7688
42. Capasso, S., and Salvadori, S. (1999) J. Pept. Res. 54, 377-382
43. Capasso, S., Di Donato, A., Esposito, L., Sica, F., Sorrentino, G., Vitagliano, L., Zagari, A., and Mazzarella, L. (1996) J. Mol. Biol. 257, 492-496
44. Esposito, L., Vitagliano, L., Sica, F., Sorrentino, G., Zagari, A., and Mazzarella, L. (2000) J. Mol. Biol. 297, 713-732
45. Mazzarella, L., Capasso, S., Demasi, D., Di Lorenzo, G., Mattia, C. A., and Zagari, A. (1993) Acta Crystallogr. Sect. D 49, 389-402
46. Anfinsen, C. B., and Scheraga, H. A. (1975) Adv. Protein Chem. 29, 205-300
47. Carsana, A., Furia, A., Gallo, A., Beintema, J. J., and Libonati, M. (1981) Biochim. Biophys. Acta 654, 77-85
48. Sorrentino, S., Lavitrano, M., De Prisco, R., and Libonati, M. (1985) Biochim. Biophys. Acta 827, 135-139
49. Puett, D. (1973) J. Biol. Chem. 248, 3566-3572
50. Wang, F. F. C., and Hirs, C. H. W. (1977) J. Biol. Chem. 252, 8358-8364
51. Catanzano, F., Graziano, G., Capasso, S., and Barone, G. (1997) Protein Sci. 6, 1682-1693
52. Bennett, M. J., Schlunegger, M. P., and Eisenberg, D. (1995) Protein Sci. 4, 2455-2468
53. Weickmann, J. L., Elson, M., and Glitz, D. G. (1981) Biochemistry 20, 1272-1278
54. Beintema, J. J., and Lenstra, J. A. (1982) in Macromolecular Sequences in Systematic and Evolutionary Biology (Goodman, M., ed) pp. 43-73, Plenum Publishing Corp., New York
55. Beintema, J. J., Schueller, C., Irie, M., and Carsana, A. (1988) Prog. Biophys. Mol. Biol. 51, 165-192
56. Hatters, D. M., Minton, A. P., and Howlett, G. J. (2002) J. Biol. Chem. 277, 7824-7830
57. Kiefhaber, T., and Schmid, F. X. (1992) J. Mol. Biol. 224, 231-240
58. Cook, K. H., Schmid, F. X., and Baldwin, R. L. (1979) Proc. Natl. Acad. Sci. U. S. A. 76, 6157-6161
59. Gorman, P. M., Yip, C. M., Fraser, P. E., and Chakrabartty, A. (2003) J. Mol. Biol. 325, 743-757
60. Chakrabartty, A. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 14757-14759
61. Terzi, E., Holzemann, G., and Seelig, J. (1994) Biochemistry 33, 1345-1350
62. Zou, W. Q., Yang, D. S., Fraser, P. E., Cashman, N. R., and Chakrabartty, A. (2001) Eur. J. Biochem. 268, 4885-4891
63. Nilsson, M. R., Driscoll, M., and Raleigh, D. P. (2002) Protein Sci. 11, 342-349
64. Hou, L., Kang, I., Marchant, R. E., and Zagorski, M. G. (2002) J. Biol. Chem. 277, 40173-40176
65. Uversky, V. N., Yamin, G., Souillac, P. O., Goers, J., Glaser, C. B., and Fink, A. L. (2002) FEBS Lett. 517, 239-244