-
1
-
-
0028063588
-
11-Fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis
-
Antson, A.A., Brzozowski, A.M., Dodson, E.J., Dauter, Z., Wilson, K.S., Kurecki, T., Otridge, J., and Gollnick, P. 1994. 11-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis. J. Mol. Biol. 244: 1-5.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 1-5
-
-
Antson, A.A.1
Brzozowski, A.M.2
Dodson, E.J.3
Dauter, Z.4
Wilson, K.S.5
Kurecki, T.6
Otridge, J.7
Gollnick, P.8
-
2
-
-
0028964336
-
The Structure of trp RNA-binding attenuation protein
-
Antson, A.A., Otridge, J., Brzozowski, A.M., Dodson, E.J., Dodson, G.G., Wilson, K.S. Smith, T.M., Yang, M., Kurecki, T., and Gollnick, P. 1995. The Structure of trp RNA-binding attenuation protein. Nature 374: 693-700.
-
(1995)
Nature
, vol.374
, pp. 693-700
-
-
Antson, A.A.1
Otridge, J.2
Brzozowski, A.M.3
Dodson, E.J.4
Dodson, G.G.5
Wilson, K.S.6
Smith, T.M.7
Yang, M.8
Kurecki, T.9
Gollnick, P.10
-
3
-
-
0033575897
-
Structure of the trp RNA-binding attenuation protein TRAP bound to RNA
-
Antson, A.A., Dodson, E.J., Dodson, G., Greaves, R.B., Chen, X., and Gollnick, P. 1999. Structure of the trp RNA-binding attenuation protein TRAP bound to RNA. Nature 401: 235-242.
-
(1999)
Nature
, vol.401
, pp. 235-242
-
-
Antson, A.A.1
Dodson, E.J.2
Dodson, G.3
Greaves, R.B.4
Chen, X.5
Gollnick, P.6
-
4
-
-
0034810138
-
Posttranscription initiation control of tryptophan metabolism in Bacillus subtilis by the trp RNA-binding attenuation protein (TRAP), anti-TRAP, and RNA structure
-
Babitzke P. and Gollnick, P. 2001. Posttranscription initiation control of tryptophan metabolism in Bacillus subtilis by the trp RNA-binding attenuation protein (TRAP), anti-TRAP, and RNA structure. J. Bacteriol. 183: 5795-5802.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 5795-5802
-
-
Babitzke, P.1
Gollnick, P.2
-
5
-
-
0027458419
-
Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein
-
Babitzke, P. and Yanofsky, C. 1993. Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein. Proc. Natl. Acad. Sci. 90: 133-137.
-
(1993)
Proc. Natl. Acad. Sci.
, vol.90
, pp. 133-137
-
-
Babitzke, P.1
Yanofsky, C.2
-
6
-
-
0029018202
-
Structural features of L-tryptophan required for activation of TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis
-
-. 1995. Structural features of L-tryptophan required for activation of TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis. J. Biol. Chem. 270: 12452-12456.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 12452-12456
-
-
-
7
-
-
0028361572
-
TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multisubunit complex that appears to recognize G/UAG repeats in the trpEDCFBA and trpG transcripts
-
Babitzke, P., Stults, J.T., Shire, S.J., and Yanofsky, C. 1994. TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multisubunit complex that appears to recognize G/UAG repeats in the trpEDCFBA and trpG transcripts. J. Biol. Chem. 269: 16597-16604.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 16597-16604
-
-
Babitzke, P.1
Stults, J.T.2
Shire, S.J.3
Yanofsky, C.4
-
8
-
-
0029839067
-
Interaction of the trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis with RNA: Effects of the number of GAG repeats, the nucleotides separating adjacent repeats, and RNA secondary structure
-
Babitzke, P., Yealy, J., and Campanelli, D. 1996. Interaction of the trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis with RNA: Effects of the number of GAG repeats, the nucleotides separating adjacent repeats, and RNA secondary structure. J. Bacteriol. 178: 5159-5163.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5159-5163
-
-
Babitzke, P.1
Yealy, J.2
Campanelli, D.3
-
9
-
-
0041757737
-
Role of RNA structure in transcription attenuation in Bacillus subtilis: The trpEDCFBA operon as a model system
-
in press
-
Babitzke, P., Schaak, J.E., Yakhnin, A.V., and Bevilacqua, P.C. 2003. Role of RNA structure in transcription attenuation in Bacillus subtilis: The trpEDCFBA operon as a model system. Methods Enzymol. (in press).
-
(2003)
Methods Enzymol.
-
-
Babitzke, P.1
Schaak, J.E.2
Yakhnin, A.V.3
Bevilacqua, P.C.4
-
10
-
-
0032506045
-
Thermodynamic analysis of an RNA combinatorial library contained in a short hairpin
-
Bevilacqua, J.M. and Bevilacqua, P.C. 1998. Thermodynamic analysis of an RNA combinatorial library contained in a short hairpin. Biochemistry 37: 15877-15884.
-
(1998)
Biochemistry
, vol.37
, pp. 15877-15884
-
-
Bevilacqua, J.M.1
Bevilacqua, P.C.2
-
12
-
-
0033022150
-
Regulatory features of the trp operon and the crystal structure of the trp RNA-binding attenuation protein from Bacillus stearothermophilus
-
Chen, X., Antson, A.A., Yang, M., Li, P., Baumann, C., Dodson, E.J., Dodson, G.G., and Gollnick, P. 1999. Regulatory features of the trp operon and the crystal structure of the trp RNA-binding attenuation protein from Bacillus stearothermophilus. J. Mol. Biol. 289: 1003-1016.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1003-1016
-
-
Chen, X.1
Antson, A.A.2
Yang, M.3
Li, P.4
Baumann, C.5
Dodson, E.J.6
Dodson, G.G.7
Gollnick, P.8
-
13
-
-
0028341904
-
RNAs with dual specificity and dual RNAs with similar specificity
-
Connell, G.J. and Yarus, M. 1994. RNAs with dual specificity and dual RNAs with similar specificity. Science 264: 1137-1141.
-
(1994)
Science
, vol.264
, pp. 1137-1141
-
-
Connell, G.J.1
Yarus, M.2
-
14
-
-
0032493809
-
trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis
-
Du, H. and Babitzke, P. 1998. trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis. J. Biol. Chem. 273: 20494-20503.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20494-20503
-
-
Du, H.1
Babitzke, P.2
-
15
-
-
0030934761
-
The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis
-
Du, H., Tarpey, R., and Babitzke, P. 1997. The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis. J. Bacteriol. 179: 2582-2586.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2582-2586
-
-
Du, H.1
Tarpey, R.2
Babitzke, P.3
-
16
-
-
0025254630
-
The mtr locus is a two-gene operon required for transcription attenuation in the trp operon of Bacillus subtilis
-
Gollnick, P., Ishino, S., Kuroda, M.I., Henner, D.J., and Yanofsky, C. 1990. The mtr locus is a two-gene operon required for transcription attenuation in the trp operon of Bacillus subtilis. Proc. Natl. Acad. Sci. 87: 8726-8730.
-
(1990)
Proc. Natl. Acad. Sci.
, vol.87
, pp. 8726-8730
-
-
Gollnick, P.1
Ishino, S.2
Kuroda, M.I.3
Henner, D.J.4
Yanofsky, C.5
-
17
-
-
0003221794
-
Aromatic amino acid metabolism in Bacillus subtilis
-
ASM Press, Washington, DC
-
Gollnick, P., Babitzke, P., Merino, E., and Yanofsky, C. 2002. Aromatic amino acid metabolism in Bacillus subtilis. In Bacillus subtilis and its closest relatives: From genes to cells, pp. 233-244. ASM Press, Washington, DC.
-
(2002)
Bacillus subtilis and Its Closest Relatives: From Genes to Cells
, pp. 233-244
-
-
Gollnick, P.1
Babitzke, P.2
Merino, E.3
Yanofsky, C.4
-
18
-
-
0028906665
-
The mtrB gene of Bacillus pumilus encodes a protein with sequence and functional homology to the trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis
-
Hoffman, R.J. and Gollnick, P. 1995. The mtrB gene of Bacillus pumilus encodes a protein with sequence and functional homology to the trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis. J. Bacteriol. 177: 839-842.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 839-842
-
-
Hoffman, R.J.1
Gollnick, P.2
-
19
-
-
0024041531
-
cis-acting sites in the transcript of the Bacillus subtilis trp operon regulate expression of the operon
-
Kuroda, M.I., Henner, D., and Yanofsky, C. 1988. cis-acting sites in the transcript of the Bacillus subtilis trp operon regulate expression of the operon. J. Bacteriol. 170: 3080-3088.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 3080-3088
-
-
Kuroda, M.I.1
Henner, D.2
Yanofsky, C.3
-
20
-
-
0028237035
-
Stabilization of RNA structure by Mg ions. Specific and nonspecific effects
-
Laing, L.G., Gluick, T.C., and Draper, D.E. 1994. Stabilization of RNA structure by Mg ions. Specific and nonspecific effects. J. Mol. Biol. 237: 577-587.
-
(1994)
J. Mol. Biol.
, vol.237
, pp. 577-587
-
-
Laing, L.G.1
Gluick, T.C.2
Draper, D.E.3
-
21
-
-
0030747007
-
Unusual dynamics and pK(a) shift at the active site of a lead-dependent ribozyme
-
Legault, P. and Pardi, A. 1997. Unusual dynamics and pK(a) shift at the active site of a lead-dependent ribozyme. J. Am. Chem. Soc. 119: 6621-6628.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 6621-6628
-
-
Legault, P.1
Pardi, A.2
-
22
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D.H., Sabina, J., Zuker, M., and Turner, D.H. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288: 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
23
-
-
0028871292
-
trp RNA-binding attenuation protein (TRAP)- trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon
-
Merino, E., Babitzke, P., and Yanofsky, C. 1995. trp RNA-binding attenuation protein (TRAP)- trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon. J. Bacteriol. 177: 6362-6370.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6362-6370
-
-
Merino, E.1
Babitzke, P.2
Yanofsky, C.3
-
24
-
-
0027509047
-
MtrB from Bacillus subtilis binds specifically to trp leader RNA in a tryptophan-dependent manner
-
Otridge, J. and Gollnick, P. 1993. MtrB from Bacillus subtilis binds specifically to trp leader RNA in a tryptophan-dependent manner. Proc. Natl. Acad. Sci. 90: 128-132.
-
(1993)
Proc. Natl. Acad. Sci.
, vol.90
, pp. 128-132
-
-
Otridge, J.1
Gollnick, P.2
-
26
-
-
0034719109
-
Adenine protonation in domain B of the hairpin ribozyme
-
Ravindranathan, S., Butcher, S.E., and Feigon, J. 2000. Adenine protonation in domain B of the hairpin ribozyme. Biochemistry 39: 16026-16032.
-
(2000)
Biochemistry
, vol.39
, pp. 16026-16032
-
-
Ravindranathan, S.1
Butcher, S.E.2
Feigon, J.3
-
27
-
-
0034115502
-
A Bacillus subtilis gene of previously unknown function, yhaG, is translationally regulated by tryptophan-activated TRAP and appears to be involved in tryptophan transport
-
Sarsero, J.P., Merino, E., and Yanofsky, C. 2000. A Bacillus subtilis gene of previously unknown function, yhaG, is translationally regulated by tryptophan-activated TRAP and appears to be involved in tryptophan transport. J. Bacteriol. 182: 2329-2331.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2329-2331
-
-
Sarsero, J.P.1
Merino, E.2
Yanofsky, C.3
-
28
-
-
0042736855
-
2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding
-
2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding. J. Mol. Biol. 32: 555-574.
-
(2003)
J. Mol. Biol.
, vol.32
, pp. 555-574
-
-
Schaak, J.E.1
Yakhnin, H.2
Bevilacqua, P.C.3
Babitzke, P.4
-
29
-
-
0022570121
-
Novel form of transcription attenuation regulates expression the Bacillus subtilis tryptophan operon
-
Shimotsu, H., Kuroda, M.I., Yanofsky, C., and Henner, D.J. 1986. Novel form of transcription attenuation regulates expression the Bacillus subtilis tryptophan operon. J. Bacteriol. 166: 461-471.
-
(1986)
J. Bacteriol.
, vol.166
, pp. 461-471
-
-
Shimotsu, H.1
Kuroda, M.I.2
Yanofsky, C.3
Henner, D.J.4
-
30
-
-
0025942760
-
Nucleotide sequence of trpE, anthranilate synthase I gene, of Bacillus caldotenax
-
Shiratsuchi, A. and Sato, S. 1991. Nucleotide sequence of trpE, anthranilate synthase I gene, of Bacillus caldotenax. Biochim. Biophys. Acta 1090: 348-350.
-
(1991)
Biochim. Biophys. Acta
, vol.1090
, pp. 348-350
-
-
Shiratsuchi, A.1
Sato, S.2
-
31
-
-
0032882591
-
A 5′ RNA stem-loop participates in the transcription attenuation mechanism that controls expression of the Bacillus subtilis trpEDCFBA operon
-
Sudershana, S., Du, H., Mahalanabis, M., and Babitzke, P. 1999. A 5′ RNA stem-loop participates in the transcription attenuation mechanism that controls expression of the Bacillus subtilis trpEDCFBA operon. J. Bacteriol. 181: 5742-5749.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 5742-5749
-
-
Sudershana, S.1
Du, H.2
Mahalanabis, M.3
Babitzke, P.4
-
33
-
-
0344289737
-
Thermodynamics of formation of secondary structure in nucleic acids
-
Oxford University Press, New York
-
Tinoco Jr., I. and Schmitz, M. 2000. Thermodynamics of formation of secondary structure in nucleic acids. In Thermodynamics in biology, pp. 131-176. Oxford University Press, New York.
-
(2000)
Thermodynamics in Biology
, pp. 131-176
-
-
Tinoco Jr., I.1
Schmitz, M.2
-
34
-
-
0000141714
-
Nitrogen- 15-labeled oligodeoxynucleotides. 3. Protonation of the adenine N1 in the A.C and A.G mispairs of the duplexes (D[Cg(N-15(1))Agaattcccg])2 and (D[Cgggaattc(N-15(1)Acg])2
-
Wang, C., Gao, H., Gaffney, B.L., and Jones, R.A. 1991. Nitrogen- 15-labeled oligodeoxynucleotides. 3. Protonation of the adenine N1 in the A.C and A.G mispairs of the duplexes (D[Cg(N-15(1))Agaattcccg])2 and (D[Cgggaattc(N-15(1)Acg])2. J. Am. Chem. Soc. 113: 5486-5488.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 5486-5488
-
-
Wang, C.1
Gao, H.2
Gaffney, B.L.3
Jones, R.A.4
-
35
-
-
0037143667
-
NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro
-
Yakhnin, A.V. and Babitzke, P. 2002. NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro. Proc. Natl. Acad. Sci. 99: 11067-11072.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 11067-11072
-
-
Yakhnin, A.V.1
Babitzke, P.2
-
36
-
-
0029120844
-
Translation of trpG in Bacillus subtilis is regulated by the trp RNA-binding attenuation protein (TRAP)
-
Yang, M., de Saizieu, A., van Loon, A.P., and Gollnick, P. 1995. Translation of trpG in Bacillus subtilis is regulated by the trp RNA-binding attenuation protein (TRAP). J. Bacteriol. 177: 4272-4278.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4272-4278
-
-
Yang, M.1
De Saizieu, A.2
Van Loon, A.P.3
Gollnick, P.4
-
37
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
NATO ASI Series, Kluwer Academic Publishers, Boston
-
Zuker, M., Mathews, D.H., and Turner, D.H. 1999. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide. In RNA biochemistry and biotechnology, NATO ASI Series, Kluwer Academic Publishers, Boston.
-
(1999)
RNA Biochemistry and Biotechnology
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
|