Comparison of RAMP and SSR markers for the study of wild barley genetic diversity

Hereditas

Volumn 131, Issue 1, 1999, Pages 5-13

  Davila J A ^a   Loarce, Y ^a   Ramsay, L ^b   Waugh, R ^b   Ferrer, Esther ^a  

^a UNIVERSITY OF ALCALÁ   (Spain)

^b SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MARKER; PRIMER DNA; REPETITIVE DNA;

ARTICLE; BARLEY; BIODIVERSITY; DNA POLYMORPHISM; GENE CLUSTER; GENE LOCUS; GENOTYPE; NONHUMAN; RANDOM AMPLIFIED POLYMORPHIC DNA;

EMBRYOPHYTA; HORDEUM; HORDEUM VULGARE SUBSP. SPONTANEUM; HORDEUM VULGARE SUBSP. VULGARE;

EID: 0344577923     PISSN: 00180661     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1601-5223.1999.00005.x     Document Type: Article

References (41)

1. Akkaya MS, Bhagwast AA and Cregan PB, (1992). Length polymorphisms of simple sequence repeat DNA in soybean. Genetics, 132: 1131-1139.
2. Bassam BJ, Caetano-Anollés G and Gresshoff PM, (1991). Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochem. 196: 81-84.
3. Becker J, and Heun M, (1995). Barley microsatellites: allele variation and mapping. Plant Mol. Biol. 27: 835-845.
4. Botstein D, White RL, Skolnick M and Davis RW, (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphism. Am. J. Hum. Genet. 32: 314-331.
5. Charters YM, Robertson A, Wilkinson MJ and Ramsay G, (1996). PCR analysis of oilseed rape cultivars (Brassica napus L.ssp. oleifera) using 5′-anchored simple sequence repeat (SSR) primers. Theor. Appl. Genet. 92: 442-447.
6. Dávila JA, Loarce Y and Ferrer E, (1998a). Molecular characterization and genetic mapping of random amplified microsatellite polymorphism in barley. Theor. Appl. Genet. (in press).
7. Dávila JA, Sánchez de la Hoz MP, Loarce Y and Ferrer E, (1998b). The use of random amplified microsatellite polymorphic DNA and coefficients of parentage to determine genetic relationships in barley. Genome 41: 477-486.
8. Dawson IK, Chalmers KJ, Waugh R and Powell W, (1993). Detection and analysis of genetic variation in Hordeum spontaneum populations from Israel using RAPD markers. Mol. Ecol. 2: 151-159.
9. Doll H and Brown AHD, (1979). Hordein variation in wild (Hordeum spontaneum) and cultivated (H. vulgare) barley. Can. J. Genet. Cytol. 21: 391-404.
10. Gupta M, Chyi YS, Romero-Severson J and Owen JL. (1994). Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple sequence repeats. Theor. Appl. Genet. 89: 998-1006.
11. Harlan JR and Zohari D, (1966). Distribution of wild wheats and barley. Science 153: 1074-1080.
12. Knüpffer H and Van Hintum THJL, (1995). The Barley Core Collection: an international effort. In: Core collections of plant genetic resources (eds T Hodgkin, AHD Brown, THJL Van Hintum. and EAV Morales) IPGRI, Wiley and Sons, Chichester, p. 171-178.
13. Kojima T, Nagaoka T, Noda K and Ogihara Y, (1998). Genetic linkage map of ISSR and RAPD markers in Eikorn wheat in relation to that of RFLP markers. Theor. Appl. Genet. 96: 37-45.
14. Mantel N, (1967). The detection of disease clustering and a generalized regression approach. Cancer. Res. 27: 209-220.
15. Maughan PJ, Saghai-Maroof MA and Buss GR, (1995). Microsatellite and amplified sequence length polymorphism in cultivated and wild soybean. Genome 38: 715-723.
16. Morgante M and Olivieri AM, (1993). PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182.
17. Nagaoka T and Ogihara Y, (1997). Applicability of intersimple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theor. Appl. Genet. 94: 597-602.
18. Nei M, (1973). Analysis of diversity in subdivided populations. Proc. Natl. Acad. Sci. (USA) 70: 3321-3323.
19. Nei M and Li WH, (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. (USA) 76: 5269-5273.
20. Nevo E, (1992). Origin, evolution, population genetic and resources for breeding of wild barley, Hordeum spontaneum, in the Fertile Crescent. In: Barley: Genetics, Biochemistry, Molecular Biology and Biotechnology (ed PR Sewry) CAB International, Wallingford, p. 19-143.
21. Nevo E, Beiles A and Zohari D, (1986). Genetic resources of wild barley in the Near East: structure, evolution and application in breeding. Biol. J. Linn. Soc. 27: 355-380.
22. Pakniyat H, Powell W, Baird G, Handley LL, Robinson D, Scringeour C, Nevo E, Hackett, C, Caligari PDS and Foster BP, (1997). AFLP variation in wild barley (Hordeum spontaneum C. Koch) with reference to salt tolerance and associated ecogeography. Genome 40: 332-341.
23. Petersen G and Seberg O, (1998). Molecular characterization and sequence polymorphism of the alcohol dehydrogenase 1 gene in Hordeum vulgare L. Euphytica 102: 57-63.
24. Petersen L, Ostergard H and Giese H. (1994). Genetic diversity among wild and cultivated barley as revealed by RFLP. Theor. Appl. Genet. 89: 676-681.
25. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S and Rafalski A. (1996). The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2: 225-238.
26. Röder MS, Plaschke J, König SU, Borner A, Sorrells ME, Tanskley SD and Ganal MW, (1995). Abundance, variability and chromosomal location of microsatellites in wheat. Mol. Gen. Genet. 246: 327-333.
27. Rohlf FJ, (1993). NTSYS-pc numerical taxonomy and multivariate analysis system. Version 1.8. Exeter Publishing Ltd., Setauket, New York.
28. Russell JR, Fuller JD, Macaulay M, Hatz BG, Jahoor A, Powell W and Waugh R, (1997a). Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor. Appl. Genet. 95: 714-722.
29. Russell J, Fuller J, Young G, Thomas B, Taramino G, Macaulay M, Waugh R and Powell W, (1997b). Discriminating between barley genotypes using microsatellite markers. Genome 40: 442-450.
30. Saghai-Maroof MA, Soliman KM, Jorgensen RA and Allard RW, (1984). Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomeal location and population dynamics. Proc. Natl. Acad. Sci.(USA) 81: 8014-8018.
31. Saghai-Maroof MA, Biyashev RB, Yang GP, Zhang Q and Allard RW, (1994). Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations, and population dynamics. Proc. Natl. Acad. Sci. (USA) 91: 5466-5470.
32. Saghai-Maroof MA, Zhang Q and Biyashev R, (1995). Comparison of restriction fragment length polymorphisms in wild and cultivated barley. Genome 38: 298-306.
33. Saitou N, and Nei N, (1987). The Neigbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
34. Sánchez de la Hoz MP, Dávila JA, Loarce Y and Ferrer E, (1996). Simple sequence repeat primers used in polymerase chain reaction amplification to study genetic diversity in barley. Genome 39: 112-117.
35. Sharp PJ, Kreiss M, Shewry P and Gale MD, (1988). Location of β-amylase sequences in wheat and its relatives, Theor. Appl. Genet. 75: 289-290.
36. Smith JSC, Chin ECL, Shu H, Smith OS, Wall SJ, Senior ML, Mitchell SE, Kresowich S and Ziegle J, (1997). An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): comparisons with data from RFLPs and pedigree. Theor. Appl. Genet. 95: 163-173.
37. Sokal RR and Rohlf FJ, (1995). Biometry: The principles and practice of statistics in biological research. (3d edition). WH Freeman and Company, New York, USA.
38. Weber JL and May PE, (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388-396.
39. Wu KS, Jones R, Danneberger L and Scolnik A, (1994). Detection of microsatellite polymorphisms without cloning. Nucleic Acid. Res. 22: 3257-3258.
40. Zhang Q, Saghai-Maroof M.A and Kleinhofs A, (1993). Comparative diversity analysis of RFLPs and isozymes within and among populations of Hordeum vulgare ssp. spontaneum. Genetics, 134: 909-916.
41. Zietkiewicz E, Rafalski A and Labuda D, (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics: 176-183.