메뉴 건너뛰기




Volumn 1399, Issue 2-3, 1998, Pages 117-125

A sequence based computational identification of a Drosophila developmentally regulated TATA-less RNA polymerase II promoter and its experimental validation

Author keywords

(Drosophila); Bent DNA; Duplex stability; TATA less promoter; yem

Indexed keywords

BETA GALACTOSIDASE; CURVED DNA; CYTOSINE; DNA; DOUBLE STRANDED DNA; GUANINE; RNA POLYMERASE II;

EID: 0344505734     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4781(98)00093-1     Document Type: Article
Times cited : (5)

References (42)
  • 1
    • 0023370741 scopus 로고
    • Isolation and characterization of a region of the Drosophila genome which contains a cluster of differentially expressed maternal genes (yema gene region)
    • O. Aït-Ahmed, M. Thomas-Cavallin, R. Rosset, Isolation and characterization of a region of the Drosophila genome which contains a cluster of differentially expressed maternal genes (yema gene region), Dev. Biol. 122 (1987) 153-162.
    • (1987) Dev. Biol. , vol.122 , pp. 153-162
    • Aït-Ahmed, O.1    Thomas-Cavallin, M.2    Rosset, R.3
  • 2
    • 0026549633 scopus 로고
    • The yemanuclein-alpha: A new Drosophila DNA binding protein specific for the oocyte nucleus
    • O. Aït-Ahmed, B. Bellon, M. Capri, C. Joblet, M. Thomas-Delaage, The yemanuclein-alpha: a new Drosophila DNA binding protein specific for the oocyte nucleus, Mech. Dev. 37 (1992) 69-80.
    • (1992) Mech. Dev. , vol.37 , pp. 69-80
    • Aït-Ahmed, O.1    Bellon, B.2    Capri, M.3    Joblet, C.4    Thomas-Delaage, M.5
  • 3
    • 0028899937 scopus 로고
    • Promoter elements in Drosophila melanogaster revealed by sequence analysis
    • I.R. Arkhipova, Promoter elements in Drosophila melanogaster revealed by sequence analysis, Genetics 139 (1995) 1359-1369.
    • (1995) Genetics , vol.139 , pp. 1359-1369
    • Arkhipova, I.R.1
  • 4
    • 0027970883 scopus 로고
    • Role of core promoter structure in assembly of the RNA polymerase II preinitiation complex. A common pathway for formation of preinitiation intermediates at many TATA and TATA-less promoters
    • T. Aso, J.W. Conaway, R.C. Conaway, Role of core promoter structure in assembly of the RNA polymerase II preinitiation complex. A common pathway for formation of preinitiation intermediates at many TATA and TATA-less promoters, J. Biol. Chem. 269 (1994) 26575-26583.
    • (1994) J. Biol. Chem. , vol.269 , pp. 26575-26583
    • Aso, T.1    Conaway, J.W.2    Conaway, R.C.3
  • 5
    • 0025282009 scopus 로고
    • Characterization of the human N-CAM promoter
    • C.H. Barton, D.A. Mann, F.S. Walsh, Characterization of the human N-CAM promoter, Biochem. J. 268 (1990) 161-168.
    • (1990) Biochem. J. , vol.268 , pp. 161-168
    • Barton, C.H.1    Mann, D.A.2    Walsh, F.S.3
  • 8
    • 0029971668 scopus 로고    scopus 로고
    • Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters
    • T.W. Burke, J.T. Kadonaga, Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters, Genes Dev. 10 (1996) 711-724.
    • (1996) Genes Dev. , vol.10 , pp. 711-724
    • Burke, T.W.1    Kadonaga, J.T.2
  • 9
    • 0031451674 scopus 로고    scopus 로고
    • Implication of a 5′ coding sequence in targeting maternal mRNA to the Drosophila oocyte
    • M. Capri, M.-J. Santoni, M. Thomas-Delaage, O. Aït-Ahmed, Implication of a 5′ coding sequence in targeting maternal mRNA to the Drosophila oocyte, Mech. Dev. 68 (1997) 91-100.
    • (1997) Mech. Dev. , vol.68 , pp. 91-100
    • Capri, M.1    Santoni, M.-J.2    Thomas-Delaage, M.3    Aït-Ahmed, O.4
  • 10
    • 0023740909 scopus 로고
    • A bidirectional promoter is regulating the Drosophila ras2 gene
    • N. Cohen, A. Salzberg, Z. Lev, A bidirectional promoter is regulating the Drosophila ras2 gene, Oncogene 3 (1988) 137-142.
    • (1988) Oncogene , vol.3 , pp. 137-142
    • Cohen, N.1    Salzberg, A.2    Lev, Z.3
  • 11
    • 0029001619 scopus 로고
    • Promoter structure and intron-exon organization of a scorpion alpha-toxin gene
    • M.-L. Delabre, P. Pasero, M. Marilley, P. Bougis, Promoter structure and intron-exon organization of a scorpion alpha-toxin gene, Biochemistry 34 (1995) 6729-6736.
    • (1995) Biochemistry , vol.34 , pp. 6729-6736
    • Delabre, M.-L.1    Pasero, P.2    Marilley, M.3    Bougis, P.4
  • 12
    • 0023007963 scopus 로고
    • Structure of the gene for mouse thymidylate synthase. Locations of introns and multiple transcriptional start sites
    • T. Deng L, D.W. Li, C.-H. Jenh, L.F. Johnson, Structure of the gene for mouse thymidylate synthase. Locations of introns and multiple transcriptional start sites, J. Biol. Chem. 261 (1986) 16000-16005.
    • (1986) J. Biol. Chem. , vol.261 , pp. 16000-16005
    • Deng L, T.1    Li, D.W.2    Jenh, C.-H.3    Johnson, L.F.4
  • 14
    • 0023665948 scopus 로고
    • Computer modelling of DNA structures involved in chromosome maintenance
    • T.T. Eckdahl, J.N. Anderson, Computer modelling of DNA structures involved in chromosome maintenance, Nucleic Acids Res. 15 (1987) 8531-8545.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 8531-8545
    • Eckdahl, T.T.1    Anderson, J.N.2
  • 15
    • 0030218799 scopus 로고    scopus 로고
    • Finding genes by computer: The state of the art
    • J.W. Fickett, Finding genes by computer: the state of the art, Trends Genet. 12 (1996) 316-320.
    • (1996) Trends Genet. , vol.12 , pp. 316-320
    • Fickett, J.W.1
  • 16
    • 0025072939 scopus 로고
    • The structure of the TATA-less rat tissue-type plasminogen activator gene. Species-specific sequence divergences in the promoter predict differences in regulation of gene expression
    • P. Feng, M. Ohlson, T. Ny, The structure of the TATA-less rat tissue-type plasminogen activator gene. Species-specific sequence divergences in the promoter predict differences in regulation of gene expression, J. Biol. Chem. 265 (1990) 2022-2027.
    • (1990) J. Biol. Chem. , vol.265 , pp. 2022-2027
    • Feng, P.1    Ohlson, M.2    Ny, T.3
  • 17
    • 0026644131 scopus 로고
    • In vivo transcriptional analysis of the TATA-less promoter of the Drosophila melanogaster vermilion gene
    • Y.W. Fridell, L.L. Searles, In vivo transcriptional analysis of the TATA-less promoter of the Drosophila melanogaster vermilion gene, Mol. Cell. Biol. 12 (1992) 4571-4577.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 4571-4577
    • Fridell, Y.W.1    Searles, L.L.2
  • 18
    • 0023645233 scopus 로고
    • Effect of Z-DNA on nucleosome placement
    • M.M. Garner, G. Felsenfeld, Effect of Z-DNA on nucleosome placement, J. MoL. Biol. 196 (1987) 581-590.
    • (1987) J. MoL. Biol. , vol.196 , pp. 581-590
    • Garner, M.M.1    Felsenfeld, G.2
  • 19
    • 0020435972 scopus 로고
    • Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells
    • C.M. Gorman, L.F. Moffat, B.H. Howard, Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells, Mol. Cell. Biol. 2 (1982) 1044-1051.
    • (1982) Mol. Cell. Biol. , vol.2 , pp. 1044-1051
    • Gorman, C.M.1    Moffat, L.F.2    Howard, B.H.3
  • 20
    • 0025312950 scopus 로고
    • Sequence-directed curvature of DNA
    • P. Hagerman, Sequence-directed curvature of DNA, Annu. Rev. Biochem. 59 (1990) 755-781.
    • (1990) Annu. Rev. Biochem. , vol.59 , pp. 755-781
    • Hagerman, P.1
  • 21
    • 0025343071 scopus 로고
    • Identification of positive and negative regulatory elements governing cell-type-specific expression of the neural cell adhesion molecule gene
    • M.-R. Hirsch, L. Gaugler, H. Deagostini-Bazin, L. Bally-Cuif, C. Goridis, Identification of positive and negative regulatory elements governing cell-type-specific expression of the neural cell adhesion molecule gene, Mol. Cell. Biol. 10 (1990) 1959-1968.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 1959-1968
    • Hirsch, M.-R.1    Gaugler, L.2    Deagostini-Bazin, H.3    Bally-Cuif, L.4    Goridis, C.5
  • 23
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA-box complex
    • Y. Kim, J.H. Geiger, S. Hahn, P.B. Sigler, Crystal structure of a yeast TBP/TATA-box complex, Nature 365 (1993) 512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.H.2    Hahn, S.3    Sigler, P.B.4
  • 24
    • 0027483012 scopus 로고
    • Co-crystal structure of TBP recognizing the minor groove of a TATA element
    • J.L. Kim, D.B. Nikolov, S.K. Burley, Co-crystal structure of TBP recognizing the minor groove of a TATA element, Nature 365 (1993) 520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, J.L.1    Nikolov, D.B.2    Burley, S.K.3
  • 25
    • 0027518094 scopus 로고
    • Transcription. Opening the gateway
    • A. Klug, Transcription. Opening the gateway, Nature 365 (1993) 486-487.
    • (1993) Nature , vol.365 , pp. 486-487
    • Klug, A.1
  • 26
    • 0018791736 scopus 로고
    • A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein
    • A. Klug, A. Jack, M.A. Viswamitra, O. Kennard, Z. Shakked, T.A. Steitz, A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein, J. Mol. Biol. 131 (1979) 669-680.
    • (1979) J. Mol. Biol. , vol.131 , pp. 669-680
    • Klug, A.1    Jack, A.2    Viswamitra, M.A.3    Kennard, O.4    Shakked, Z.5    Steitz, T.A.6
  • 27
    • 0025098692 scopus 로고
    • Detailed structure of the Drosophila melanogaster stellate genes and their transcripts
    • K.J. Livak, Detailed structure of the Drosophila melanogaster stellate genes and their transcripts, Genetics 124 (1990) 303-316.
    • (1990) Genetics , vol.124 , pp. 303-316
    • Livak, K.J.1
  • 28
    • 0023088931 scopus 로고
    • A new method for constructing linker scanning mutants
    • B. Luckow, G. Schutz, A new method for constructing linker scanning mutants, Nucleic Acids Res. 15 (1987) 417-429.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 417-429
    • Luckow, B.1    Schutz, G.2
  • 29
    • 0029900290 scopus 로고    scopus 로고
    • Common DNA structural features exhibited by eukaryotic ribosomal gene promoters
    • M. Marilley, P. Pasero, Common DNA structural features exhibited by eukaryotic ribosomal gene promoters, Nucleic Acids Res. 24 (1996) 2204-2211.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2204-2211
    • Marilley, M.1    Pasero, P.2
  • 31
    • 0021693175 scopus 로고
    • DNA sequence of the white locus of Drosophila melanogaster
    • K. O'Hare, C. Murphy, R. Levis, G.M. Rubin, DNA sequence of the white locus of Drosophila melanogaster, J. Mol. Biol. 180 (1984) 437-455.
    • (1984) J. Mol. Biol. , vol.180 , pp. 437-455
    • O'Hare, K.1    Murphy, C.2    Levis, R.3    Rubin, G.M.4
  • 32
    • 0026549371 scopus 로고
    • Alteration of the curved helical structure located in the upstream region of the beta-lactamase promoter of plasmid pUC19 and its effect on transcription
    • T. Ohyama, M. Nagumo, Y. Hirota, S. Sakuma, Alteration of the curved helical structure located in the upstream region of the beta-lactamase promoter of plasmid pUC19 and its effect on transcription, Nucleic Acids Res. 20 (1992) 1617-1622.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1617-1622
    • Ohyama, T.1    Nagumo, M.2    Hirota, Y.3    Sakuma, S.4
  • 33
    • 0027445884 scopus 로고
    • Long-range organization and sequence-directed curvature of Xenopus laevis satellite 1 DNA
    • P. Pasero, N. Sjakste, C. Blettry, C. Got, M. Marilley, Long-range organization and sequence-directed curvature of Xenopus laevis satellite 1 DNA, Nucleic Acids Res. 21 (1993) 4703-4710.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4703-4710
    • Pasero, P.1    Sjakste, N.2    Blettry, C.3    Got, C.4    Marilley, M.5
  • 35
    • 0029038960 scopus 로고
    • Predicting Pol II promoter sequences using transcription factor binding sites
    • D.S. Prestridge, Predicting Pol II promoter sequences using transcription factor binding sites, J. Mol. Biol. 249 (1995) 923-932.
    • (1995) J. Mol. Biol. , vol.249 , pp. 923-932
    • Prestridge, D.S.1
  • 36
    • 0025986514 scopus 로고
    • Transcription from a TATA-less promoter requires a multisubunit TFIID complex
    • B.F. Pugh, R. Tjian, Transcription from a TATA-less promoter requires a multisubunit TFIID complex, Genes Dev. 5 (1991) 1935-1945.
    • (1991) Genes Dev. , vol.5 , pp. 1935-1945
    • Pugh, B.F.1    Tjian, R.2
  • 37
    • 0024557039 scopus 로고
    • The 'initiator' as a transcription control element
    • S.T. Smale, D. Baltimore, The 'initiator' as a transcription control element, Cell 5 (1989) 103-113.
    • (1989) Cell , vol.5 , pp. 103-113
    • Smale, S.T.1    Baltimore, D.2
  • 38
    • 0024210345 scopus 로고
    • Vectors for Drosophila P-element-mediated transformation and tissue culture transfection
    • C.S. Thummel, A.M. Boulet, H.D. Lipshitz, Vectors for Drosophila P-element-mediated transformation and tissue culture transfection, Gene 74 (1988) 445-456.
    • (1988) Gene , vol.74 , pp. 445-456
    • Thummel, C.S.1    Boulet, A.M.2    Lipshitz, H.D.3
  • 39
    • 0026329576 scopus 로고
    • Isolation and characterization of the human gene for ADP-ribosylation factor 3, a 20-kDa guanine nucleotide-binding protein activator of cholera toxin
    • S.-C. Tsai, R.S. Haun, M. Tsuchiya, J. Moss, M. Vaughan, Isolation and characterization of the human gene for ADP-ribosylation factor 3, a 20-kDa guanine nucleotide-binding protein activator of cholera toxin, J. Biol. Chem. 266 (1991) 23053-23059.
    • (1991) J. Biol. Chem. , vol.266 , pp. 23053-23059
    • Tsai, S.-C.1    Haun, R.S.2    Tsuchiya, M.3    Moss, J.4    Vaughan, M.5
  • 40
    • 0026062650 scopus 로고
    • Species-specific patterns of DNA bending and sequence
    • J.D. VanWye, E.C. Bronson, J.N. Anderson, Species-specific patterns of DNA bending and sequence, Nucleic Acids Res. 19 (1991) 5253-5261.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 5253-5261
    • VanWye, J.D.1    Bronson, E.C.2    Anderson, J.N.3
  • 41
    • 0026667121 scopus 로고
    • Functional binding of the 'TATA' box binding component of transcription factor TFIID to the -30 region of TATA-less promoters
    • S.R. Wiley, R.J. Kraus, E. Mertz, Functional binding of the 'TATA' box binding component of transcription factor TFIID to the -30 region of TATA-less promoters, Proc. Natl. Acad. Sci. USA 89 (1992) 5814-5818.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5814-5818
    • Wiley, S.R.1    Kraus, R.J.2    Mertz, E.3
  • 42
    • 0028244684 scopus 로고
    • Architectural transcription factors
    • A.P. Wolffe, Architectural transcription factors, Science 264 (1994) 1100-1101.
    • (1994) Science , vol.264 , pp. 1100-1101
    • Wolffe, A.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.