-
1
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrich JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson J, Lu L, Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Levy R, Wilson W, Grever MR, Byrd JC, Botstein D, Brown PO, Staudt LM (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403: 503-511
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrich, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
Moore, T.14
Hudson, J.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Levy, R.25
Wilson, W.26
Grever, M.R.27
Byrd, J.C.28
Botstein, D.29
Brown, P.O.30
Staudt, L.M.31
more..
-
2
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter O, Brown PO, Botstein D (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci 97: 10101-10106
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
3
-
-
0037076322
-
Selection bias in gene extraction on the basis of microarray gene-expression data
-
Ambroise C, McLachlan GJ (2002) Selection bias in gene extraction on the basis of microarray gene-expression data. Proc Natl Acad Sci 99: 6562-6566
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 6562-6566
-
-
Ambroise, C.1
McLachlan, G.J.2
-
4
-
-
0033692876
-
Tissue classification with gene expression profiles
-
Ben-Dor A, Bruhn L, Friedman N, Nachman I, Schummer M, Yakhini Z (2000) Tissue classification with gene expression profiles. J Comput Biol 7: 559-584
-
(2000)
J Comput Biol
, vol.7
, pp. 559-584
-
-
Ben-Dor, A.1
Bruhn, L.2
Friedman, N.3
Nachman, I.4
Schummer, M.5
Yakhini, Z.6
-
5
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner M, Meltzer P, Chen Y, Jiang Y, Seftor E, Hendrix M, Radmacher M, Simon R, Yakhini Z, Ben-Dor A, Dougherty E, Wang E, Marincola F, Gooden C, Lueders J, Glatfelter A, Pollock P, Gillanders E, Leja D, Dietrich K, Beaudry C, Berens M, Alberts D, VSondak Hayward N, Trent J (2000) Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 406: 536-540
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, E.5
Hendrix, M.6
Radmacher, M.7
Simon, R.8
Yakhini, Z.9
Ben-Dor, A.10
Dougherty, E.11
Wang, E.12
Marincola, F.13
Gooden, C.14
Lueders, J.15
Glatfelter, A.16
Pollock, P.17
Gillanders, E.18
Leja, D.19
Dietrich, K.20
Beaudry, C.21
Berens, M.22
Alberts, D.23
VSondak Hayward, N.24
Trent, J.25
more..
-
6
-
-
0036372855
-
New feature subset selection procedures for classification of expression profiles
-
Bo TH, Jonassen I (2002) New feature subset selection procedures for classification of expression profiles. Genome Biol 3: 0017.1-0017.11
-
(2002)
Genome Biol
, vol.3
, pp. 00171-001711
-
-
Bo, T.H.1
Jonassen, I.2
-
7
-
-
0037255041
-
Evolutionary algorithms for finding optimal gene sets in microarray prediction
-
Deutsch JM (2003) Evolutionary algorithms for finding optimal gene sets in microarray prediction. Bioinformatics 19: 45-54
-
(2003)
Bioinformatics
, vol.19
, pp. 45-54
-
-
Deutsch, J.M.1
-
8
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumors using gene expression data
-
Dudoit S, Fridlyand J, Speed TP (2002) Comparison of discrimination methods for the classification of tumors using gene expression data. J Am Stat Assoc 97: 77-87
-
(2002)
J Am Stat Assoc
, vol.97
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.P.3
-
9
-
-
0028855843
-
A neural network model for survival data
-
Faraggi D, Simon R (1995) A neural network model for survival data. Stat Med 14: 73-82
-
(1995)
Stat Med
, vol.14
, pp. 73-82
-
-
Faraggi, D.1
Simon, R.2
-
10
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, Lander ES (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
11
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan J, Wei JS, Ringner M, Saal LH, Ladanyi M, Westerman F, Berthold F, Schwab M, Antonescu CR, Peterson C, Meltzer PS (2001) Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nat Med 7: 673-679
-
(2001)
Nat Med
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westerman, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
Meltzer, P.S.11
-
12
-
-
0036211375
-
Strong feature sets from small samples
-
Kim S, Dougherty ER, Barrera J, Chen Y, Bittner ML, Trent JM (2002) Strong feature sets from small samples. J Comput Biol 9: 127-146
-
(2002)
J Comput Biol
, vol.9
, pp. 127-146
-
-
Kim, S.1
Dougherty, E.R.2
Barrera, J.3
Chen, Y.4
Bittner, M.L.5
Trent, J.M.6
-
13
-
-
0037245772
-
Genetic algorithms applied to multi-class prediction for the analysis of gene expression data
-
Ooi CH, Tan P (2003) Genetic algorithms applied to multi-class prediction for the analysis of gene expression data. Bioinformatics 19: 37-44
-
(2003)
Bioinformatics
, vol.19
, pp. 37-44
-
-
Ooi, C.H.1
Tan, P.2
-
14
-
-
0035991757
-
A paradigm for class prediction using gene expression profiles
-
Radmacher MD, McShane LM, Simon R (2002) A paradigm for class prediction using gene expression profiles. J Comput Biol 9: 505-512
-
(2002)
J Comput Biol
, vol.9
, pp. 505-512
-
-
Radmacher, M.D.1
McShane, L.M.2
Simon, R.3
-
15
-
-
0347201147
-
Multiclass cancer diagnosis using tumor gene expression signatures
-
Ramaswamy S, Tamayo P, Rifkin R, Mukherjee S, Yeang C, Angelo M, Ladd C, Reich M, Latulippe E, Mesirov JP, Poggio T, Gerald W, Loda M, Lander ES, Golub TR (2001) Multiclass cancer diagnosis using tumor gene expression signatures. Proc Natl Acad Sci 98: 15149-15154
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 15149-15154
-
-
Ramaswamy, S.1
Tamayo, P.2
Rifkin, R.3
Mukherjee, S.4
Yeang, C.5
Angelo, M.6
Ladd, C.7
Reich, M.8
Latulippe, E.9
Mesirov, J.P.10
Poggio, T.11
Gerald, W.12
Loda, M.13
Lander, E.S.14
Golub, T.R.15
-
16
-
-
0037142053
-
The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
-
Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, Fisher RI, Gascoyne RD, Muller-Hermelink HK, Smeland EB, Giltnane JM, Hurt EM, Zhao H, Averett L, Yang L, Wilson WH, Jaffe ES, Simon R, Klausner RD, Powell J, Duffey PL, Longo DL, Greiner TC, Weisenburger DD, Sanger WG, Dave BJ, Lynch JC, Vose J, Armitage JO, Montserrat E, Lo'pez-Guillermo A, Grogan TM, Miller TP, LeBlanc M, Ott G, Kvaloy S, Delabie J, Holte H, Krajci P, Stokke T, Staudt LM (2002) The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med 346: 1937-1947
-
(2002)
N Engl J Med
, vol.346
, pp. 1937-1947
-
-
Rosenwald, A.1
Wright, G.2
Chan, W.C.3
Connors, J.M.4
Campo, E.5
Fisher, R.I.6
Gascoyne, R.D.7
Muller-Hermelink, H.K.8
Smeland, E.B.9
Giltnane, J.M.10
Hurt, E.M.11
Zhao, H.12
Averett, L.13
Yang, L.14
Wilson, W.H.15
Jaffe, E.S.16
Simon, R.17
Klausner, R.D.18
Powell, J.19
Duffey, P.L.20
Longo, D.L.21
Greiner, T.C.22
Weisenburger, D.D.23
Sanger, W.G.24
Dave, B.J.25
Lynch, J.C.26
Vose, J.27
Armitage, J.O.28
Montserrat, E.29
Lo'pez-Guillermo, A.30
Grogan, T.M.31
Miller, T.P.32
LeBlanc, M.33
Ott, G.34
Kvaloy, S.35
Delabie, J.36
Holte, H.37
Krajci, P.38
Stokke, T.39
Staudt, L.M.40
more..
-
17
-
-
18244409933
-
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning
-
Shipp MA, Ross KN, Tamayo P, Weng AP, Kutok JL, Aguiar RCT, Gaasenbeek M, Angelo M, Reich M, Pinkus GS, Ray TS, Koval MA, Last KW, Norton A, Lister TA, Mesirov J, Neuberg DS, Lander ES, Aster JC, Golub TR (2002) Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Nat Med 8: 68-74
-
(2002)
Nat Med
, vol.8
, pp. 68-74
-
-
Shipp, M.A.1
Ross, K.N.2
Tamayo, P.3
Weng, A.P.4
Kutok, J.L.5
Aguiar, R.C.T.6
Gaasenbeek, M.7
Angelo, M.8
Reich, M.9
Pinkus, G.S.10
Ray, T.S.11
Koval, M.A.12
Last, K.W.13
Norton, A.14
Lister, T.A.15
Mesirov, J.16
Neuberg, D.S.17
Lander, E.S.18
Aster, J.C.19
Golub, T.R.20
more..
-
18
-
-
0028318390
-
Statistical aspects of prognostic factor studies in oncology
-
Simon R, Altman DG (1994) Statistical aspects of prognostic factor studies in oncology. Br J Cancer 69: 979-985
-
(1994)
Br J Cancer
, vol.69
, pp. 979-985
-
-
Simon, R.1
Altman, D.G.2
-
19
-
-
0344645546
-
Experimental design of DNA microarray experiments
-
Simon R, Dobbin K (2002) Experimental design of DNA microarray experiments. Biotechniques 34: 1-5
-
(2002)
Biotechniques
, vol.34
, pp. 1-5
-
-
Simon, R.1
Dobbin, K.2
-
20
-
-
0041354026
-
-
Technical Report, Biometric Research Branch, National Cancer Institute
-
Simon R, Peng-Lam A (2003) BRB-ArrayTools Users Guide, Version 3.0 Technical Report, Biometric Research Branch, National Cancer Institute http://linus.nci.nih.gov/brb
-
(2003)
BRB-ArrayTools Users Guide, Version 3.0
-
-
Simon, R.1
Peng-Lam, A.2
-
21
-
-
0037245343
-
Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
-
Simon R, Radmacher MD, Dobbin K, McShane LM (2003) Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J Natl Cancer Inst 95: 14-18
-
(2003)
J Natl Cancer Inst
, vol.95
, pp. 14-18
-
-
Simon, R.1
Radmacher, M.D.2
Dobbin, K.3
McShane, L.M.4
-
22
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani R, Hastie T, Narasimhan B, Chu G (2002) Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci 99: 6567-6572
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Chu, G.4
-
23
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't-Veer LJ, Dai H, Vijver MJvd, He YD, Hart AAM, Mao M, Peterse HL, Kooy KVD, Marton JM, Witteveen AT, Schreiber GJ, Kerkhoven RM, Roberts C, Linsley PS, Bernards R, Friend SH (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415: 530-536
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
Van't-Veer, L.J.1
Dai, H.2
Vijver, M.J.V.D.3
He, Y.D.4
Hart, A.A.M.5
Mao, M.6
Peterse, H.L.7
Kooy, K.V.D.8
Marton, J.M.9
Witteveen, A.T.10
Schreiber, G.J.11
Kerkhoven, R.M.12
Roberts, C.13
Linsley, P.S.14
Bernards, R.15
Friend, S.H.16
-
24
-
-
0036645090
-
Prospective molecular profiling of melanoma metastases suggests classifiers of immune responsiveness
-
Wang E, Miller LD, Ohnmacht GA, Mocellin S, Perez-Diez A, Petersen D, Zhao Y, Simon R, Powell JI, Asaki E, Alexander HR, Durray PH, Herlyn M, Restifo HP, Liu ET, Rosenberg SA, Marincola FM (2002) Prospective molecular profiling of melanoma metastases suggests classifiers of immune responsiveness. Cancer Res 62: 3581-3586
-
(2002)
Cancer Res
, vol.62
, pp. 3581-3586
-
-
Wang, E.1
Miller, L.D.2
Ohnmacht, G.A.3
Mocellin, S.4
Perez-Diez, A.5
Petersen, D.6
Zhao, Y.7
Simon, R.8
Powell, J.I.9
Asaki, E.10
Alexander, H.R.11
Durray, P.H.12
Herlyn, M.13
Restifo, H.P.14
Liu, E.T.15
Rosenberg, S.A.16
Marincola, F.M.17
-
25
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West M, Blanchette C, Dressman H (2001) Predicting the clinical status of human breast cancer by using gene expression profiles. Proc Natl Acad Sci 98: 11462-11467
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 11462-11467
-
-
West, M.1
Blanchette, C.2
Dressman, H.3
-
26
-
-
0035810997
-
Recursive partitioning for tumor classification with gene expression microarray data
-
Zhang H, Yu CY, Singer B, Xiong M (2001) Recursive partitioning for tumor classification with gene expression microarray data. Proc Natl Acad Sci 98: 6730-6735
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 6730-6735
-
-
Zhang, H.1
Yu, C.Y.2
Singer, B.3
Xiong, M.4
|