-
1
-
-
0001327023
-
Electronic absorption spectra of heme and heme proteins
-
D. Dolphin, editor. Academic Press, New York
-
Adar, F. 1978. Electronic absorption spectra of heme and heme proteins. In The Porphyrins, Vol. III. D. Dolphin, editor. Academic Press, New York. 167-209.
-
(1978)
The Porphyrins
, vol.3
, pp. 167-209
-
-
Adar, F.1
-
2
-
-
0028960071
-
Role of electrostatic screening in determining protein main chain conformational preferences
-
Avbelj, F., and J. Moult. 1995. Role of electrostatic screening in determining protein main chain conformational preferences. Biochemistry. 34: 755-764.
-
(1995)
Biochemistry
, vol.34
, pp. 755-764
-
-
Avbelj, F.1
Moult, J.2
-
4
-
-
0017751668
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein, F. C., T. F. Koetzle, G. J. B. Williams, E. F. Meyer, Jr., M. D. Brice, J. R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi. 1977. The Protein Data Bank: a computer-based archival file for macromolecular structures. Eur. J. Biochem. 80:319-324.
-
(1977)
Eur. J. Biochem.
, vol.80
, pp. 319-324
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer E.F., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
5
-
-
0019888051
-
Characterization of conformational heterogeneity in the heme pocket of ferricytochrome c using high field proton nuclear magnetic resonance spectroscopy
-
Burns, P. D., and G. N. La Mar. 1981. Characterization of conformational heterogeneity in the heme pocket of ferricytochrome c using high field proton nuclear magnetic resonance spectroscopy. J. Biol. Chem. 256: 4934-4939.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 4934-4939
-
-
Burns, P.D.1
La Mar, G.N.2
-
6
-
-
0025007598
-
High-resolution three-dimensional structure of horse heart cytochrome c
-
Bushnell, G. W., G. V. Louie, and G. D. Brayer. 1990. High-resolution three-dimensional structure of horse heart cytochrome c. J. Mol. Biol. 214:585-595.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 585-595
-
-
Bushnell, G.W.1
Louie, G.V.2
Brayer, G.D.3
-
7
-
-
0023640468
-
Linkage of functional and structural heterogeneity in proteins: Dynamic hole burning in carboxymyoglobin
-
Campbell, B. F., M. R. Chance, and J. M. Friedman. 1987. Linkage of functional and structural heterogeneity in proteins: dynamic hole burning in carboxymyoglobin. Science. 238:373-376.
-
(1987)
Science
, vol.238
, pp. 373-376
-
-
Campbell, B.F.1
Chance, M.R.2
Friedman, J.M.3
-
8
-
-
0027155642
-
Redesign of the interior hydrophilic region of mitochondrial cytochrome c by site-directed mutagenesis
-
Davies, A. M., J. G. Guillemette, M. Smith, C. Greenwood, A. G. P. Thurgood, A. G. Mauk, and G. R. Moore. 1993. Redesign of the interior hydrophilic region of mitochondrial cytochrome c by site-directed mutagenesis. Biochemistry: 32:5431-5435.
-
(1993)
Biochemistry
, vol.32
, pp. 5431-5435
-
-
Davies, A.M.1
Guillemette, J.G.2
Smith, M.3
Greenwood, C.4
Thurgood, A.G.P.5
Mauk, A.G.6
Moore, G.R.7
-
9
-
-
0001008006
-
Cytochrome c
-
Academic Press, New York
-
Dickerson, R. E., and R. Timkovich. 1975. Cytochrome c. In The Enzymes. Academic Press, New York. 398-547.
-
(1975)
The Enzymes
, pp. 398-547
-
-
Dickerson, R.E.1
Timkovich, R.2
-
10
-
-
5244247401
-
Atomic level simulations on a million particles: The cell multipole method for Coulomb and London nonbond interactions
-
Ding, H. Q., N. Karasawa, and W. A. Goddard. 1992. Atomic level simulations on a million particles: the cell multipole method for Coulomb and London nonbond interactions. J. Chem. Phys. 97:4309-4320.
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 4309-4320
-
-
Ding, H.Q.1
Karasawa, N.2
Goddard, W.A.3
-
11
-
-
0001250593
-
Charged amino acids as spectroscopic determinants for chlorophyll in vivo
-
Eccles, J., and B. Honig. 1983. Charged amino acids as spectroscopic determinants for chlorophyll in vivo. Proc. Natl. Acad. Sci. USA. 80: 4959-4962.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 4959-4962
-
-
Eccles, J.1
Honig, B.2
-
12
-
-
0002237761
-
Biomolecules: Where the physics of complexity and simplicity meets
-
Frauenfelder, H., and P. G. Wolynes. 1994. Biomolecules: where the physics of complexity and simplicity meets. Physics Today. 47:58-64.
-
(1994)
Physics Today
, vol.47
, pp. 58-64
-
-
Frauenfelder, H.1
Wolynes, P.G.2
-
13
-
-
0001460972
-
EXAFS studies of nickel(II) and nickel(I) factor 430 M. Conformational flexibility of the F430 skeleton
-
Furenlid, L. R., M. W. Renner, and J. Fajer. 1990. EXAFS studies of nickel(II) and nickel(I) factor 430 M. Conformational flexibility of the F430 skeleton. J. Am. Chem. Soc. 112:8987-8989.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 8987-8989
-
-
Furenlid, L.R.1
Renner, M.W.2
Fajer, J.3
-
14
-
-
0028960211
-
Stark effect experiments on photochemical holes in chromoproteins: Protoporphyrin IX substituted myoglobin
-
Gafert, J., J. Friedrich, and F. Parak. 1995. Stark effect experiments on photochemical holes in chromoproteins: protoporphyrin IX substituted myoglobin. Proc. Natl. Acad. Sci. USA. 92:2116-2120.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2116-2120
-
-
Gafert, J.1
Friedrich, J.2
Parak, F.3
-
15
-
-
0025758270
-
Large protein-induced dipoles for a symmetric carotenoid in a photosynthetic antenna complex
-
Gottfried, D. S., M. A. Steffen, and S. G. Boxer. 1991. Large protein-induced dipoles for a symmetric carotenoid in a photosynthetic antenna complex. Science. 251:662-665.
-
(1991)
Science
, vol.251
, pp. 662-665
-
-
Gottfried, D.S.1
Steffen, M.A.2
Boxer, S.G.3
-
16
-
-
0002312013
-
Optical spectra and electronic structure of porphyrins and related rings
-
Academic Press, New York
-
Gouterman, M. 1978. Optical spectra and electronic structure of porphyrins and related rings. In The Porphyrins. Academic Press, New York. 1-156.
-
(1978)
The Porphyrins
, pp. 1-156
-
-
Gouterman, M.1
-
17
-
-
84986792503
-
Concentration dependence of the electrooptical spectra from two dimensional aggregated chromophore systems
-
Grewer, G., and M. Lösche, 1991. Concentration dependence of the electrooptical spectra from two dimensional aggregated chromophore systems. Makromol. Chem. Symp. 46:79-87.
-
(1991)
Makromol. Chem. Symp.
, vol.46
, pp. 79-87
-
-
Grewer, G.1
Lösche, M.2
-
18
-
-
0025944990
-
Electrostatic control of midpoint potentials in the cytochrome subunit of the Rhodopseudomonas viridis reaction center
-
Gunner, M. R., and B. Honig. 1991. Electrostatic control of midpoint potentials in the cytochrome subunit of the Rhodopseudomonas viridis reaction center. Proc. Natl. Acad Sci. USA. 88:9151-9155.
-
(1991)
Proc. Natl. Acad Sci. USA
, vol.88
, pp. 9151-9155
-
-
Gunner, M.R.1
Honig, B.2
-
19
-
-
0024519351
-
Treatment of electrostatic effects in macromolecular modeling
-
Harvey, S. C. 1989. Treatment of electrostatic effects in macromolecular modeling. Proteins Struct. Fund. Genet. 5:78-92.
-
(1989)
Proteins Struct. Fund. Genet.
, vol.5
, pp. 78-92
-
-
Harvey, S.C.1
-
20
-
-
0027756813
-
Structural changes in cytochrome c upon hydrogen-deuterium exchange
-
Hildebrandt, P., F. Vanhecke, G. Heibel, and G. Mauk. 1993. Structural changes in cytochrome c upon hydrogen-deuterium exchange. Biochemistry. 32:14158-14164.
-
(1993)
Biochemistry
, vol.32
, pp. 14158-14164
-
-
Hildebrandt, P.1
Vanhecke, F.2
Heibel, G.3
Mauk, G.4
-
21
-
-
0028923142
-
Conserved nonplanar heme distortions in cytochromes c
-
Hobbs, J. D., and J. R. Shelnutt. 1995. Conserved nonplanar heme distortions in cytochromes c. J. Protein Chem. 14:19-25.
-
(1995)
J. Protein Chem.
, vol.14
, pp. 19-25
-
-
Hobbs, J.D.1
Shelnutt, J.R.2
-
22
-
-
0024580271
-
The electrostatic potential of B-DNA
-
Jayaram, B., K. A. Sharp, and B. Honig. 1989. The electrostatic potential of B-DNA. Biopolymers. 28:975-993.
-
(1989)
Biopolymers
, vol.28
, pp. 975-993
-
-
Jayaram, B.1
Sharp, K.A.2
Honig, B.3
-
23
-
-
0031904598
-
Conservation of the conformation of the porphyrin macrocycle in hemeproteins
-
Jentzen, W., J.-G. Ma, and J. A. Shelnutt. 1998. Conservation of the conformation of the porphyrin macrocycle in hemeproteins. Biophys. J. 74:753-763.
-
(1998)
Biophys. J.
, vol.74
, pp. 753-763
-
-
Jentzen, W.1
Ma, J.-G.2
Shelnutt, J.A.3
-
24
-
-
0031078856
-
Structural charaterization of synthetic and protein-bound porphyrins in terms of the lowest-frequency normal coordinates of the macrocycle
-
Jentzen, W., W.-Z. Song, and J. A. Shelnutt. 1997. Structural charaterization of synthetic and protein-bound porphyrins in terms of the lowest-frequency normal coordinates of the macrocycle. J. Phys. Chem. B. 101:1684-1699.
-
(1997)
J. Phys. Chem. B.
, vol.101
, pp. 1684-1699
-
-
Jentzen, W.1
Song, W.-Z.2
Shelnutt, J.A.3
-
25
-
-
0042691939
-
Electric field effects in molecular systems studied via persistent hole burning
-
Th. Rizzo and A. B. Myers, editors. chap. 8. Wiley, New York
-
Kohler, B. E., R. I. Personov, and J. C. Woehl. 1994. Electric field effects in molecular systems studied via persistent hole burning. In Laser Techniques in Chemistry. Th. Rizzo and A. B. Myers, editors. chap. 8. Wiley, New York. 283-323.
-
(1994)
Laser Techniques in Chemistry
, pp. 283-323
-
-
Kohler, B.E.1
Personov, R.I.2
Woehl, J.C.3
-
26
-
-
0037653186
-
Proteins in electric fields and pressure fields: Basic aspects
-
Köhler, M., J. Friedrich, and J. Fidy. 1998. Proteins in electric fields and pressure fields: basic aspects. Biochim. Biophys. Acta. 1386:255-288.
-
(1998)
Biochim. Biophys. Acta
, vol.1386
, pp. 255-288
-
-
Köhler, M.1
Friedrich, J.2
Fidy, J.3
-
27
-
-
0029885485
-
Stark-effect experiments in cytochrome c-type proteins: Structural hierarchies
-
Kohler, M., J. Gafert, J. Friedrich, J. M. Vanderkooi, and M. Laberge. 1996. Stark-effect experiments in cytochrome c-type proteins: structural hierarchies. Biophys. J. 71:77-85.
-
(1996)
Biophys. J.
, vol.71
, pp. 77-85
-
-
Kohler, M.1
Gafert, J.2
Friedrich, J.3
Vanderkooi, J.M.4
Laberge, M.5
-
28
-
-
0040056083
-
Influence of pH on the pocket field of c-type proteins as monitored by hole burning spectroscopy
-
Köhler, M., M. Laberge, J. Friedrich, and J. M. Vanderkooi. 1997. Influence of pH on the pocket field of c-type proteins as monitored by hole burning spectroscopy. Chem. Phys. 224:327-335.
-
(1997)
Chem. Phys.
, vol.224
, pp. 327-335
-
-
Köhler, M.1
Laberge, M.2
Friedrich, J.3
Vanderkooi, J.M.4
-
29
-
-
0031709523
-
Intrinsic protein electric fields: Basic non-covalent interactions and relationship to protein-induced Stark effects
-
Laberge, M. 1998. Intrinsic protein electric fields: basic non-covalent interactions and relationship to protein-induced Stark effects. Biochim. Biophys. Acta. 1386:305-330.
-
(1998)
Biochim. Biophys. Acta
, vol.1386
, pp. 305-330
-
-
Laberge, M.1
-
30
-
-
33748501690
-
Effect of a protein field on the CO stretch frequency. FDPB calculations on carbonmonoxy cytochrome c
-
Laberge, M., J. M. Vanderkooi, and K. A. Sharp, 1996. Effect of a protein field on the CO stretch frequency. FDPB calculations on carbonmonoxy cytochrome c. J. Phys. Chem. 100:10793-10801.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 10793-10801
-
-
Laberge, M.1
Vanderkooi, J.M.2
Sharp, K.A.3
-
31
-
-
0031836277
-
Microperoxidase-11: Molecular dynamics and Q-band excited resonance Raman of the oxidized, reduced and carbonyl forms
-
Laberge, M., A. Vreugdenhil, J. M. Vanderkooi, and I. S. Butler. 1998. Microperoxidase-11: molecular dynamics and Q-band excited resonance Raman of the oxidized, reduced and carbonyl forms. J. Biomol. Struct. Dyn. 15:1039-1050.
-
(1998)
J. Biomol. Struct. Dyn.
, vol.15
, pp. 1039-1050
-
-
Laberge, M.1
Vreugdenhil, A.2
Vanderkooi, J.M.3
Butler, I.S.4
-
32
-
-
0025045408
-
Electrostatic potential maps at the quantum chemistry level of the active site of the serine peptidases, alpha-chymotrypsin and subtilisin
-
Lamotte-Brasseur, J., G. Dive, D. Dehareng, and J. M. Ghuysen. 1990. Electrostatic potential maps at the quantum chemistry level of the active site of the serine peptidases, alpha-chymotrypsin and subtilisin. J. Theor. Biol. 145:183-198.
-
(1990)
J. Theor. Biol.
, vol.145
, pp. 183-198
-
-
Lamotte-Brasseur, J.1
Dive, G.2
Dehareng, D.3
Ghuysen, J.M.4
-
34
-
-
0005577941
-
Theoretical investigations of iron porphyrins
-
Addison-Wesley, London
-
Loew, G. H. 1983. Theoretical investigations of iron porphyrins. In Iron Porphyrins. Addison-Wesley, London. 1-87.
-
(1983)
Iron Porphyrins
, pp. 1-87
-
-
Loew, G.H.1
-
35
-
-
0025146477
-
High-resolution refinement of yeast iso-1-cytochrome c and comparison with other eukaryotic cytochromes c
-
Louie, G. V., and G. D. Brayer. 1990. High-resolution refinement of yeast iso-1-cytochrome c and comparison with other eukaryotic cytochromes c. J. Mol. Biol. 214:527-555.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 527-555
-
-
Louie, G.V.1
Brayer, G.D.2
-
36
-
-
0000420301
-
Microscopic calculation of solvent effects on absorption spectra of conjugated molecules
-
Luzhkov, V., and A. Warshel. 1991. Microscopic calculation of solvent effects on absorption spectra of conjugated molecules. J. Am. Chem. Soc. 113:4491-4499.
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 4491-4499
-
-
Luzhkov, V.1
Warshel, A.2
-
37
-
-
0002209845
-
Persistent spectral holes in external fields
-
Maier, M. 1986. Persistent spectral holes in external fields. Appl. Phys. B. 41:73-90.
-
(1986)
Appl. Phys. B.
, vol.41
, pp. 73-90
-
-
Maier, M.1
-
38
-
-
84986486656
-
A rapid finite difference algorithm utilizing successive over-relaxation to solve the Poisson-Boltzman equation
-
Nicholls, A., and B. Honig. 1991. A rapid finite difference algorithm utilizing successive over-relaxation to solve the Poisson-Boltzman equation. J. Comp. Chem. 12:435-445.
-
(1991)
J. Comp. Chem.
, vol.12
, pp. 435-445
-
-
Nicholls, A.1
Honig, B.2
-
39
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., K. A. Sharp, and B. Honig. 1991. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins. 11:281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
40
-
-
0025689207
-
Electrostatic field around cytochrome c: Theory and energy transfer experiment
-
Northrup, S., T. G. Wensel, C. F. Meares, J. J. Wendoloski, and J. B. Matthew. 1990. Electrostatic field around cytochrome c: theory and energy transfer experiment. Proc. Natl. Acad. Sci. USA. 87:9503-9507.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 9503-9507
-
-
Northrup, S.1
Wensel, T.G.2
Meares, C.F.3
Wendoloski, J.J.4
Matthew, J.B.5
-
41
-
-
0028956684
-
Dramatic differences in the motions of the mouth of open and closed cytochrome P450BM-3 by molecular dynamics simulations
-
Paulsen, M. D., and R. L. Orastein. 1995. Dramatic differences in the motions of the mouth of open and closed cytochrome P450BM-3 by molecular dynamics simulations. Proteins. 21:237-243.
-
(1995)
Proteins
, vol.21
, pp. 237-243
-
-
Paulsen, M.D.1
Orastein, R.L.2
-
42
-
-
0001307697
-
Calculation of electric field effects on persistent spectral holes in amorphous host-guest systems
-
Schätz, P., and M. Maier. 1987. Calculation of electric field effects on persistent spectral holes in amorphous host-guest systems. J. Chem. Phys. 87:809-820.
-
(1987)
J. Chem. Phys.
, vol.87
, pp. 809-820
-
-
Schätz, P.1
Maier, M.2
-
43
-
-
34249919671
-
Implementing the fast multipole method in three dimensions
-
Schmidt, K. E., and M. A. Lee. 1991. Implementing the fast multipole method in three dimensions. J. Stat. Phys. 63:1223-1237.
-
(1991)
J. Stat. Phys.
, vol.63
, pp. 1223-1237
-
-
Schmidt, K.E.1
Lee, M.A.2
-
44
-
-
0011294197
-
Über den einfluss elektrischer felder auf das absorptionsspektrum von farbstoffmolekülen in lipidschichten. III. Elektrochromie eines carotenoids (lutein)
-
Schmidt, S., and R. Reich. 1972. Über den Einfluss elektrischer Felder auf das Absorptionsspektrum von Farbstoffmolekülen in Lipidschichten. III. Elektrochromie eines Carotenoids (Lutein). Ber. Bunsenges. 76: 1202-1208.
-
(1972)
Ber. Bunsenges.
, vol.76
, pp. 1202-1208
-
-
Schmidt, S.1
Reich, R.2
-
45
-
-
0025283002
-
Electrostatic interactions in macromolecules: Theory and applications
-
Sharp, K., and B. Honig. 1990. Electrostatic interactions in macromolecules: theory and applications. Annu. Rev. Biophys. Chem. 19:301-332.
-
(1990)
Annu. Rev. Biophys. Chem.
, vol.19
, pp. 301-332
-
-
Sharp, K.1
Honig, B.2
-
46
-
-
32844457567
-
Accurate calculation of hydration free energies using macroscopic solvent models
-
Sitkoff, D., K. A. Sharp, and B. Honig. 1994. Accurate calculation of hydration free energies using macroscopic solvent models. J. Phys. Chem. 98:1978-1988.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978-1988
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
47
-
-
0004778563
-
Fluctuations of electric field in enzyme active site as an efficient source of reaction activation
-
Sitnitsky, A. E. 1995. Fluctuations of electric field in enzyme active site as an efficient source of reaction activation. Chem. Phys. Lett. 240:47-52.
-
(1995)
Chem. Phys. Lett.
, vol.240
, pp. 47-52
-
-
Sitnitsky, A.E.1
-
48
-
-
0017127249
-
Metallocytochrome c: Characterization of electronic absorption and emission spectra of Sn and Zn cytochromes c
-
Vanderkooi, J. M., F. Adar, and M. Erecinska. 1976. Metallocytochrome c: characterization of electronic absorption and emission spectra of Sn and Zn cytochromes c. Eur. J. Biochem. 64:381-387.
-
(1976)
Eur. J. Biochem.
, vol.64
, pp. 381-387
-
-
Vanderkooi, J.M.1
Adar, F.2
Erecinska, M.3
-
50
-
-
0024306320
-
Molecular dynamics effects on protein electrostatics
-
Wendoloski, J., and J. B. Matthew. 1989. Molecular dynamics effects on protein electrostatics. Proteins. 5:313-321.
-
(1989)
Proteins
, vol.5
, pp. 313-321
-
-
Wendoloski, J.1
Matthew, J.B.2
-
51
-
-
0030780764
-
Surface of cytochrome c: Infrared spectroscopy of carboxyl groups
-
Wright, W. W., M. Laberge, and J. M. Vanderkooi. 1997. Surface of cytochrome c: infrared spectroscopy of carboxyl groups. Biochemistry. 36:14724-14732.
-
(1997)
Biochemistry
, vol.36
, pp. 14724-14732
-
-
Wright, W.W.1
Laberge, M.2
Vanderkooi, J.M.3
-
52
-
-
0027254625
-
Boundary element solution of macromolecular electrostatics: Interaction energy between two proteins
-
Zhou, H. X. 1993. Boundary element solution of macromolecular electrostatics: interaction energy between two proteins. Biophys. J. 65: 955-963.
-
(1993)
Biophys. J.
, vol.65
, pp. 955-963
-
-
Zhou, H.X.1
-
53
-
-
0027194110
-
Comparison of electrostatic interactions and of protein-protein orientations in electron-transfer reactions of plastocyanin with the triplet state of zinc cytochrome and with zinc cytochrome c cation radical
-
Zhou, J. S., and N. M. Kostic. 1993. Comparison of electrostatic interactions and of protein-protein orientations in electron-transfer reactions of plastocyanin with the triplet state of zinc cytochrome and with zinc cytochrome c cation radical. Biochemistry. 32:4539-4546.
-
(1993)
Biochemistry
, vol.32
, pp. 4539-4546
-
-
Zhou, J.S.1
Kostic, N.M.2
|