Cloning and heterologous expression of Entamoeba histolytica adenylate kinase and uridylate/cytidylate kinase

Gene

Volumn 209, Issue 1-2, 1998, Pages 219-228

  Sánchez, Lidya B ^a   Müller, Miklós ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

Amitochondriate protist; NMP kinase; Recombinant enzyme

Indexed keywords

ADENYLATE KINASE; COMPLEMENTARY DNA; PROTEIN KINASE; RECOMBINANT ENZYME;

ARTICLE; CODON USAGE; CONTROLLED STUDY; DNA FLANKING REGION; ENTAMOEBA HISTOLYTICA; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYADENYLATION; PRIORITY JOURNAL; PROMOTER REGION; START CODON;

ADENYLATE KINASE; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; CONSENSUS SEQUENCE; DNA PRIMERS; DNA, COMPLEMENTARY; ENTAMOEBA HISTOLYTICA; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; GENES, PROTOZOAN; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEOSIDE-PHOSPHATE KINASE; PHYLOGENY; POLYMERASE CHAIN REACTION; RECOMBINANT PROTEINS; REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION, GENETIC;

ARCHEZOA; ENTAMOEBA COLI; ENTAMOEBA HISTOLYTICA; ESCHERICHIA COLI; PROTISTA; PROTOZOA;

EID: 0344333484     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00053-5     Document Type: Article

References (33)

1. Adachi, J., Hasegawa, M., 1996. MOLPHY Version 2.3: Programs for Molecular Phylogenetics Based on Maximum Likelihood. Computer Science Monographs, No. 28, Institute of Statistical Mathematics, Tokyo, Japan, pp. 1-150.
2. Bruchhaus I., Leippe M., Lioutas C., Tannich E. Unusual gene organization in the protozoan parasite Entamoeba histolytica. DNA Cell Biol. 12:1993;925-933.
3. Cabot E.L., Beckenbach A.T. Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. Comp. Appl. Biosci. 5:1989;233-234.
4. Declerck P.J., Müller M. Hydrogenosomal ATP:AMP phosphotransferase of Trichomonas vaginalis. Comp. Biochem. Physiol. 88B:1987;575-580.
5. Diederichs K., Schulz G.E. The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 Å resolution. J. Mol. Biol. 217:1991;541-549.
6. Dinbergs I.D., Lindmark D.G. Tritrichomonas foetus: Purification and characterization of hydrogenosomal ATP:AMP phosphotransferase (adenylate kinase). Exp. Parasitol. 69:1990;150-156.
7. Feldhaus P., Frohlich T., Goody R.S., Isakov M., Schirmer R.H. Synthetic inhibitors of adenylate kinases in the assays for ATPases and phosphokinases. Eur. J. Biochem. 57:1975;197-204.
8. Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:1978;401-410.
9. Frank R., Trosin M., Tomasselli A.G., Schulz G.E., Schirmer R.H. Mitochondrial adenylate kinase (AK2) from bovine heart. Homology with the cytosolic isoenzyme in the catalytic region. Eur. J. Biochem. 141:1984;629-636.
10. Fukami-Kobayashi K., Nosaka M., Nakazawa A., Go M. Ancient divergence of long and short isoforms of adenylate kinase: molecular evolution of the nucleoside monphosphate kinase family. FEBS Lett. 385:1996;214-220.
11. Glaser P., Presecan E., Delepierre M., Surewicz W.K., Mantsch H.H., Barzu O., Gilles A.-M. Zinc, a novel structural element found in the family of bacterial adenylate kinases. Biochemistry. 31:1992;3038-3043.
12. Kaneko T., Sato S., Kotani H., Asamizu E., Nakamura Y. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3:1996;109-136.
13. Keister D. Axenic culture of Giardia lamblia in TYI-S-33 medium supplemented with bile. Trans. R. Soc. Trop. Med. Hyg. 77:1983;487-488.
14. Kishino H., Miyata T., Hasegawa M. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J. Mol. Evol. 30:1990;151-160.
15. Kuby S.A., Fleming G., Frischat A., Cress M.C., Hamada M. Studies on adenosine triphosphate transphosphorylases. Human isoenzymes of adenylate kinase: isolation and physicochemical comparison of the crystalline human ATP:AMP transphosphorylases from muscle and liver. J. Biol. Chem. 258:1983;1901-1907.
16. Kuby S.A., Palmieri R.H., Frischat A., Fischer A.H., Wu L.H., Maland L., Manship M. Studies on adenosine triphosphate transphosphorylases. Amino acid sequence of rabbit muscle ATP-AMP transphosphorylase. Biochemistry. 23:1984;2393-2399.
17. Lange S., Rozario C., Müller M. Primary structure of the hydrogenosomal adenylate kinase of Trichomonas vaginalis and its phylogenetic relationships. Mol. Biochem. Parasitol. 66:1994;297-308.
18. +-linked) and adenylate kinase as core and integral membrane enzymes respectively in the glycosomes of Trypanosoma rhodesiense. Mol. Biochem. Parasitol. 14:1985;219-230.
19. Müller M. Energy metabolism of protozoa without mitochondria. Annu. Rev. Microbiol. 42:1988;465-488.
20. Müller-Dickmann H.J., Schulz G.E. The structure of uridylate kinase with its substrates, showing the transition state geometry. J. Mol. Biol. 236:1994;361-367.
21. Nakazawa A., Yamada M., Tanaka H., Shahjahan M., Tanabe T. Gene structures of three vertebrate adenylate kinase isozymes. Progr. Clin. Biol. Res. 334:1990;495-514.
22. Ohama T., Muto A., Osawa S. Spectinomycin operon of Micrococcus luteus: Evolutionary implications of organization and novel codon usage. J. Mol. Evol. 29:1989;381-395.
23. Okajima T., Goto S., Tanizawa K., Tagaya M., Fukui T., Shimofuruya H., Suzuki J. Cloning, sequencing, and expression in Escherichia coli of cDNA encoding porcine brain UMP-CMP kinase. J. Biochem. 117:1995;980-986.
24. Philippe H. MUST, a computer package of Management Utilities for Sequences and Trees. Nucl. Acids Res. 21:1993;5264-5272.
25. Purdy J.E., Pho L.T., Mann B.J., Petri W.A. Jr. Upstream regulatory elements controlling expression of the Entamoeba histolytica lectin. Mol. Biochem. Parasitol. 78:1996;91-103.
26. Reeves R.E. Metabolism of Entamoeba histolytica Schaudinn, 1903. Adv. Parasitol. 23:1984;105-142.
27. Rozario C., Müller M. Primary structure of a putative adenylate kinase gene of Giardia lamblia. Mol. Biochem. Parasitol. 71:1995;279-283.
28. 2+ at 2.2 Å implications for water-mediated specificity. Biochemistry. 35:1996;9716-9727.
29. Schirmer R.H., Thuma E. Sensitivity of adenylate kinase isozymes from normal and dystrophic human muscle to sulfhydryl reagents. Biochim. Biophys. Acta. 268:1972;92-97.
30. Schricker R., Magdolen V., Kaniak A., Wolf K., Banlow W. The adenylate kinase family in yeast: identification of URA6 as a multicopy suppressor of deficiency in major AMP kinase. Gene. 122:1992;111-118.
31. Schricker R., Magdolen V., Bandlow W. A new member of the adenylate kinase family in yeast: PAK3 is highly homologous to mammalian AK3 and is targeted to mitochondria. Mol. Gen. Genet. 233:1992;363-371.
32. Tian G., Sanders C.R., Kishi F., Nakazawa A., Tsai M.D. Mechanism of adenylate kinase. Histidine-36 is not directly involved in catalysis, but protects cysteine-25 and stabilizes the tertiary structure. Biochemistry. 27:1988;5544-5552.
33. Wiesmüller L., Noegel A.A., Barzu O., Gerisch G., Schleicher M. cDNA-derived sequence of UMP-CMP kinase from Dictyostelium discoideum and expression of the enzyme in Escherichia coli. J. Biol. Chem. 265:1990;6339-6345.