CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis

Plant Molecular Biology

Volumn 52, Issue 6, 2003, Pages 1125-1134

  Zhou, Changhe ^a   Miki, Brian ^b   Wu, Keqiang ^a  

^a WEST VIRGINIA UNIVERSITY   (United States)

^b OTTAWA RESEARCH AND DEVELOPMENT CENTRE   (Canada)

Author keywords

Arabidopsis; CHB2; Chromatin remodeling; SWI SNF complex; SWI3; Transgenic plants

Indexed keywords

ADENOSINETRIPHOSPHATE; AMINO ACIDS; DATABASE SYSTEMS; GENES; PLANTS (BOTANY); RNA; SCREENING; TISSUE;

GENE EXPRESSIONS;

MOLECULAR BIOLOGY;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BLOTTING, NORTHERN; DNA, ANTISENSE; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; PHENOTYPE; PLANTS, GENETICALLY MODIFIED; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA-BINDING PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID;

ANIMALIA; ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA; EUKARYOTA;

EID: 0344287164     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:PLAN.0000004305.60407.8b     Document Type: Article

References (37)

1. Aasland, R., Stewart, A.F. and Gibson, T. 1996. The SANT domain: a putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB. Trends Biochem. Sci. 21: 87-88.
2. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
3. Amedeo, P., Habu, Y., Afsar, K., Scheid, O.M. Paszkowski, J. 2000. Disruption of the plant gene MOM releases transcriptional silencing of methylated genes. Nature 405: 203-206.
4. Brzeski, J., Podstolski, W., Olczak, K. and Jerzmanowski, A. 1999. Identification and analysis of the Arabidopsis thaliana BSH gene, a member of the SNF5 gene family. Nucl. Acids Res. 27: 2393-2399.
5. Bultman, S., Gebuhr, T., Yee, D., Mantia, C.L., Nicholson, J., Gilliam, A., Randazzo, F., Metzger, D., Chambon, P., Crabtree, G. and Magnuson, T. 2000. A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes. Mol. Cell 6: 1287-1295.
6. Cairns, B.R., Kim, Y.-J., Sayre, M.H., Laurent, B.C. and Kornberg, R.D. 1994. A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast. Proc. Natl. Acad. Sci. USA 91: 1950-1954.
7. Carlson, M., Osmond, B.C. and Botstein, D. 1981. Mutants of yeast defective in sucrose utilization. Genetics 98: 25-40.
8. Clough, S.J. and Bent, A.F. 1998. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
9. Crosby, M.A., Miller, C., Alon, T., Watson, K.L., Verrijzer, C.P., Goldman-Lebi, R. and Zak, N.B. 1999. The trithorax group gene moira encodes a brahma-associated putative chromatin-remodeling factor in Drosophila melanogaster. Mol. Cell Biol. 19: 1159-1170.
10. Dellaporta, S.L., Wood, J. and Hicks, J.B. 1983. A plant DNA minipreparation, version II. Plant Mol. Biol. Rep. 1: 19-21.
11. Eshed, Y., Baum, S.F. and Bowman, J.L. 1999. Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell 99: 199-209.
12. Fry, C.J. and Peterson, C.L. 2001. Chromatin remodeling enzymes: who's on first? Curr. Biol. 11: R185-R197.
13. Hassan, A.H., Neely, K.E., Vignali, M., Reese, J.C. and Workman, J.L. 2001. Promoter targeting of chromatin-modifying complexes. Front Biosci. 6: D1054-D1064.
14. Holstege, F.C.P., Jennings, G., Wyrick, J.J., Lee, T.I., Hengarner, C.J., Green, M.R., Golub, T.R., Lander, E.S. and Young, R.A. 1998. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717-728.
15. Jeddeloh, J.A., Stokes, T.L. and Richards, E.J. 1999. Maintenance of genomic methylation requires a SWI/SNF-like protein. Nature Genet. 22: 94-97.
16. Kim, J.K., Huh, S.O., Choi, H., Lee, K.S., Shin, D., Lee, C., Nam, J.S., Kim, H., Chung, H., Lee, H.W., Park, S.D. and Seong, R.H. 2001. Srg3, a mouse homolog of yeast SW13, is essential for early embryogenesis and involved in brain development. Mol. Cell Biol. 21: 7787-7795.
17. Li, G., Hall, T.C. and Holmes-Davis, R. 2002. Plant chromatin: development and gene control. Bioessays 24: 234-243.
18. Murashige, T. and Skoog, F. 1962. A revised medium for rapid growth and bioassay with tobacco tissue cultures. Physiol. Plant. 15: 473-497.
19. Ogas, J., Kaufmann, S., Henderson, J. and Somerville, C. 1999. PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis. Proc. Natl. Acad. Sci. USA 96: 13839-13844.
20. Peterson, C.L. and Herskowitz, I. 1992. Characterization of the yeast SWI1, SWI2, SW13 genes, which encode a global activator of transcription. Cell 68: 573-583.
21. Peterson, C.L., Dingwall, A. and Scott, M.P. 1994. Five SW1/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement. Proc. Natl. Acad. Sci. USA 91: 2905-2908.
22. Phelan, M.L, Sif, S., Narlikar, G.J. and Kingston, R.E. 1999. Reconstitution of a core chromatin remodeling complex from SWI/SNF subunit. Mol. Cell 3: 247-253.
23. Sambrook, J., Fritsch, E.F. and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Plainview, NY.
24. Sarnowski, T.J., Swiezewski, S., Pawlikowska, K., Kaczanowski, S. and Jerzmanowski, A. 2002. AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Nucl. Acids Res. 30: 3412-3421.
25. Shaw, C.H. 1995. Introduction of cloning plasmids into Agrobacterium tumefaciens. Meth. Mol. Biol. 49: 33-37.
26. Strommer, J., Gregerson, R. and Vayda, M. 1993. Isolation and characterization of plant mRNA. In: B.R. Glik and J.E. Thompson (Eds.) Methods in Plant Molecular Biology and Biotechnology, CRC Press, Boca Raton, FL, pp. 49-66.
27. Sudarsanam, P. and Winston, F. 2000. The Swi/Snf family nucleosome-remodeling complexes and transcriptional control. Trends Genet. 16: 345-351.
28. Tamkun, J.W., Deuring, R., Scott, M.P., Kissinger, M., Pattatucci, A.M., Kaufman, T.C. and Kennison, J.A. 1992. brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2. Cell 68: 561-572.
29. Tian, L. and Chen, Z.J. 2001. Blocking histone deacetylation in Arahidopsis induces pleiotropic effects on plant gene regulation and development. Proc. Natl. Acad. Sci. USA 98: 200-205.
30. Van Larebeke, N., Engler, G., Holsters, M., Van den Elscker, S., Zainen, I., Schilperoort, R.A. and Schell, J. 1974. Large plasmid in Agrobacterium tumefaciens essential for crown gall-inducing ability. Nature 252: 169-170.
31. Vignali, M., Hassan, A.H., Neely, K.E. and Workman, J.L. 2000. ATP-dependent chromatin-remodeling complexes. Mol. Cell Biol. 20: 1899-1910.
32. Wade, P.A., Jones, P.L., Vermaak, D. and Wolffe, A.P. 1998. A multiple subunit Mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase. Curr. Biol. 8: 843-846.
33. Wagner, D. and Meyerowitz, E.M. 2002. SPLAYED, a novel SWI/SNF ATPase homolog, controls reproductive development in Arabidopsis. Curr. Biol. 12: 85-94.
34. Wang, W., Xue, Y., Zhou, S., Kuo, A., Cairns, B.R. and Crabtree, G.R. 1996. Diversity and specialization of mammalian SWI/SNF complexes. Genes Dev. 10: 2117-2130.
35. Workman, J.L. and Kingston, R.E. 1998. Alteration of nucleosome structure as a mechanism of transcriptional regulation. Annu. Rev. Biochem. 67: 545-579.
36. Wu, K., Malik, K., Tian, L., Brown, D. and Miki, B. 2000. Functional analysis of a RPD3 histone deacetylase homolog in Arabidopsis thaliana. Plant Mol. Biol. 44: 167-176.
37. Zhang, Y., LeRoy, G., Seelig, H.P., Lane, W.S. and Reinberg, D. 1998. The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities. Cell 95: 279-289.