Analysis of 6 short tandem repeat loci in Navarre (northern Spain)

Human Biology

Volumn 71, Issue 1, 1999, Pages 43-54

  Iriondo, Mikel ^a   De La Rúa, Concepción ^a   Barbero, María del Carmen ^a   Aguirre, Ana ^a   Manzano, Carmen ^a  

^a UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

Author keywords

CSF1PO; F13A1; FES FPS; Navarre; Population genetics; Short tandem repeats; Spain; TH01; TPOX; VWA31 A

Indexed keywords

EID: 0344061570     PISSN: 00187143     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (55)

1. Aguirre, A.I. 1987. Análisis de la estructura genética de la población autóctona vizcaina: polimorfismo bioquímico. Ph.D. thesis, Euskal Herriko Unibertsitatea, Bilbao, Spain.
2. Aguirre, A.I., A. Vicario, L.I. Mazón et al. 1989. AK1, PGD, GC, and HP frequencies in the Basque population: A review. Gene Geogr. 3:41-51.
3. Aguirre, A., A. Vicario, L.I. Mazón et al. 1991. Are the Basques a single and a unique population? Am. J. Hum. Genet. 49:450-458.
4. Andres, M.I., V. Prieto, I.C. Flores et al. 1996. Population genetics of three STRs: THO1, CSF1PO, and TPOX in southern Spain. In Advances in Forensic Haemogenetics 6, A. Carracedo, B. Brinkmann, and W. Bär, eds. Berlin, Germany: Springer-Verlag, 489-491.
5. Anker, R., T. Steinbrueck, and H. Donis-Keller. 1992. Tetranucleotide repeat polymorphism at the human thyroid peroxidase (hTPO) locus. Hum. Molec. Genet. 1:137.
6. Barbero, M.C., M. Iriondo, and C. Manzano. 1998. Characterization of the short tandem repeat locus HumF13A01 in autochthonous Basques. Unpublished.
7. Bassam, B.J., G. Caetano-Anolles, and P.M. Gresshoff. 1991. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochem. 196:80-83.
8. Calafell, F., and J. Bertranpetit. 1994. Principal component analysis of gene frequencies and the origin of Basques. Am. J. Phys. Anthropol. 93:201-215.
9. Caro-Baroja, J. 1977. Los pueblos del Norte. San Sebastian, Spain: Txertoa.
10. Cavalli-Sforza, L.L., P. Menozzi, and A. Piazza. 1994. The History and Geography of Human Genes. Princeton, NJ: Princeton University Press.
11. Crespillo, M., J.A. Luque, R. Fernández et al. 1997. Allele frequency distributions of 13 PCR-based systems in a population from northeast Spain. Int. J. Legal Med. 110:223-225.
12. De Stefano, F., L. Casarino, M.G. Costa et al. 1996. Automated profiling of multiplexed DNA markers: An Italian database of four coamplified STR loci. In Advances in Forensic Haemogenetics 6, A. Carracedo, B. Brinkmann, and W. Bär, eds. Berlin, Germany: Springer-Verlag, 174-176.
13. Dobosz, M., A. Caglia, R. Maviglia et al. 1998. Allele frequencies of four STR polymorphisms in an Italian population sample. In Progress in Forensic Genetics 7, B. Olaisen, B. Brinkmann, and P.J. Lincoln, eds. Amsterdam, The Netherlands: Elsevier Science, 270-271.
14. Edwards, A., A. Civitello, H.A. Hammond et al. 1991. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am. J. Hum. Genet. 49:746-756.
15. Espinheira, R., H. Geada, T. Ribeiro et al. 1996. STR analysis: HUMTHO1 and HUMFESFPS for forensic application. In Advances in Forensic Haemogenetics 6, A. Carracedo, B. Brinkmann, and W. Bär, eds. Berlin, Germany: Springer-Verlag, 528.
16. Felsenstein, J. 1989. PHYLIP: Phylogeny Inference Package (version 3.2). Cladistics 5:164-166.
17. Füredi, S., J. Woller, and Z. Pádár. 1997. A population study of the STR loci HUMLPL, HUMF13B, and HUMF13A01 in Hungary. Int. J. Legal Med. 110:107-108.
18. Füredi, S., B. Budowle, J. Woller et al. 1996. Hungarian population data on six STR loci -HUMVWFA31, HUMTH01. HUMCSF1PO, HUMFES/FPS, HUMTPOX, and HUMHPRTB - derived using multiplex PCR amplification and manual typing. Int. J. Legal Med. 109:100-101.
19. Geada, H., R. Espinheira, T. Ribeiro et al. 1996. Population genetics of D1S8O, HUMVWFA31/ A, and HUMF13A1 from Portugal and Goa (India). In Advances in Forensic Haemogenetics 6, A. Carracedo, B. Brinkmann, and W. Bär, eds. Berlin, Germany: Springer-Verlag, 465-467.
20. Goedde, H.W., L. Hirth, H.-G. Benkmann et al. 1972. Population genetic studies of red cell enzyme polymorphisms in four Spanish populations. Hum. Hered. 22:552-560.
21. Goedde, H.W., L. Hirth, H.-G. Benkmann et al. 1973. Population genetic studies of serum protein polymorphisms in four Spanish populations. Hum. Hered. 23:135-146.
22. Gómez, R., and J.A. Lakarra. 1994. Euskal dialektologiako kongresua (Donostia 1991ko Iraila). San Sebastian, Spain: Diputación Foral de Gipuzkoa.
23. Guo, S.W., and E.A. Thompson. 1992. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361-372.
24. Gusmão, L., M.J. Prata, and A. Amorim. 1995. The STR system hTPO: Population study and segregation data. Int. J. Legal Med. 108:167-169.
25. Hammond, H.A., L. Jin, Y. Zhong et al. 1994. Evaluation of 13 short tandem repeat loci for use in personal identification applications. Am. J. Hum. Genet. 55:175-189.
26. Hochmeister, M.N., B. Budowle, J.W. Schumm et al. 1995. Swiss population data and forensic efficiency values on 3 tetrameric short tandem repeat loci - HUMTH01, TPOX, and CSF1PO - derived using a STR multiplex system. Int. J. Legal Med. 107:246-249.
27. Huckenbeck, W., K. Demir, H.-G. Scheil et al. 1996. German data on the HUMVWA31 locus. Anthropol. Anz. 54:1-6.
28. Iriondo, M., M.C. Barbero, N. Izagirre et al. 1997. Data on six short-tandem repeat polymorphisms in an autochthonous Basque population. Hum. Hered. 47:131-137.
29. Kimpton, C., A. Walton, and P. Gill. 1992. A further tetranucleotide repeat polymorphism in the vWF gene. Hum. Molec. Genet. 1:287.
30. Kratzer, A., and W. Bär. 1996. Swiss population data for the STR systems HUMVWA, HUMF13A1, and HUMFES. In Advances in Forensic Haemogenetics 6, A. Carracedo, B. Brinkmann, and W. Bär, eds. Berlin. Germany: Springer-Verlag, 563-565.
31. Lorente, M., J.A. Lorente, M.R. Wilson et al. 1997. Spanish population data on seven loci: D1S80, D17S5, HUMTH01, HUMVWA, ACTBP2, D21S11, and HLA-DQA1. Forensic Sci. Int. 86(3):163-171.
32. Lucotte, G., and S. Hazout. 1996. Y-chromosome DNA haplotypes in Basques. J. Molec. Evol. 42:472-475.
33. Luis, T.R., and B. Caeiro. 1995. Application of two STRs (VWF and hTPO) to human population profiling: A survey in Galicia. Hum. Biol. 67(5):789-795.
34. Manzano, C., J.M. Orue, and C. de la Rúa. 1996. The "Basqueness" of the Basques of Alava: A reappraisal from a multidisciplinary perspective. Am. J. Phys. Anthropol. 99:249-258.
35. Manzano, C., A.I. Aguirre, M. Iriondo et al. 1996. Genetic polymorphisms of the Basques from Gipuzkoa: Genetic heterogeneity of the Basque population. Ann. Hum. Biol. 23:285-296.
36. Manzano, C., A.I. Aguirre, P. Madoz et al. 1993. New contribution to the genetics of the Basques: Heterogeneity in the esterase D subtype distribution. Hum. Hered. 43:219-222.
37. Martín, P., A. Alonso, B. Budowle et al. 1995. Spanish population data on 7 tetrameric short tandem repeat loci. Int. J. Legal Med. 108:145-149.
38. Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590.
39. Pérez-Lezaun, A., F. Calafell, E. Mateu et al. 1997. Microsatellite variation and the differentiation of modern humans. Hum. Genet. 99:1-7.
40. Pestoni, C., M.V. Lareu, M.S. Rodriguez et al. 1995. The use of the STRs HUMTH01, HUM-VWA31/A, HUMF13A1, HUMFES/FPS. HUMLPL in forensic application: Validation studies and population data for Galicia (NW Spain). Int. J. Legal Med. 107:283-290.
41. Pfitzinger, H., B. Ludes, P. Kintz et al. 1995. French Caucasian population data for HUMTH01 and HUMFES/FPS short tandem repeat (STR) systems. J. Forensic Sci. 40:270-274.
42. Pinheiro, F., L. Pontes, M. Gené et al. 1997. Population study of the HUMTH01, HUMVWA31A, HUMF13A1, and HUMFES/FPS STR polymorphisms in the north of Portugal. J. Forensic Sci. 42(1):121-124.
43. Polymeropoulos, M.H., D.S. Rath, H. Xiao et al. 1991a. Tetranucleotide repeat polymorphism at the human c-fes/fps proto-oncogene (FES). Nucleic Acids Res. 19:4018.
44. Polymeropoulos, M.H., D.S. Rath, H. Xiao et al. 1991b. Tetranucleotide repeat polymorphism at the human coagulation factor XIII A subunit gene (F13A1). Nucleic Acids Res. 19:4306.
45. n and reassignment of alleles in population analysis by using a locus-specific allelic ladder. Am. J. Hum. Genet. 53:953-958.
46. Raymond, M., and F. Rousset. 1995. GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism. J. Hered. 86:248-249.
47. Reynolds, J., B.S. Weir, and C.C. Cockerham. 1983. Estimation of the coancestry coefficient: Basis for a short-term genetic distance. Genetics 105:767-779.
48. Richards, M., H. Corte-Real, P. Forster et al. 1996. Paleolithic and Neolithic lineages in the European mitochondrial gene pool. Am. J. Hum. Genet. 59:185-203.
49. Rohlf, F.J. 1988. NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System for the IBM PC Microcomputer (and Compatible), Version 1.40. New York: Oxford University Press.
50. Rousselet, F., H. Pfitzinger, and P. Mangin. 1996. French Caucasian population data obtained from fluorescently detected HumVWA31/A and HumF13A01 short tandem repeat loci. Int. J. Legal Med. 109:5-9.
51. Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molec. Biol. Evol. 4:406-425.
52. Santos, E.J.M., J.T. Epplen, and C. Epplen. 1996. Extensive gene flow in human populations as revealed by protein and microsatellite DNA markers. Hum. Hered. 47:165-172.
53. Vona, G., C.M. Calò, G.E. Mameli et al. 1996. Variability of the CD4 and F13A1 short tandem repeats in Corsicans, Sardinians, and Piaroa Indians. Gene Geogr. 10:51-63.
54. Walsh, P.S., D.A. Metzger, and R. Higuchi. 1991. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 10:506-513.
55. Weir, B.S. 1990. Genetic Data Analysis. Sunderland, MA: Sinauer Associates.