Y chromosomal DNA variation in East Asian populations and its potential for inferring the peopling of Korea

Journal of Human Genetics

Volumn 45, Issue 2, 2000, Pages 76-83

  Kim, Wook ^a   Shin, Dong Jik ^a   Harihara, Shinji ^b   Kim, Yung Jin ^c  

^a Dankook University   (South Korea)

^b UNIVERSITY OF TOKYO   (Japan)

^c Chungnam National University   (South Korea)

Author keywords

DXYS156Y; DXYS5Y; DYS19; DYS287; East Asians; Koreans; SRY465; Y chromosome

Indexed keywords

DNA;

ALLELE; ARTICLE; ASIA; DNA SEQUENCE; ETHNIC GROUP; HAPLOTYPE; HUMAN; KOREA; MALE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; Y CHROMOSOME;

THAIS;

EID: 0343920855     PISSN: 14345161     EISSN: None     Source Type: Journal    
DOI: 10.1007/s100380050015     Document Type: Article

References (47)

1. Batzer MA, Deininger PL (1991) A human-specific subfamily of Alu sequences. Genomics 9:481-487
2. Cavalli-Sforza LL, Bodmer WF (1971) The genetics of human populations. WH Freeman, San Francisco
3. Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The history and geography of human genes. Princeton University Press, Princeton
4. Chard C (1974) Northeast Asia in prehistory. University of Wisconsin Press, Madison
5. n and map to human X and Y chromosomes. Hum Mutat 4:208-211
6. Chu JY, Huang W, Kuang SQ, Wang JM, Xu JJ, Chu ZT, Yang ZQ, Lin KQ, Li P, Wu M, Geng ZC, Tan CC, Du RF, Jin L (1998) Genetic relationship of populations in China. Proc Natl Acad Sci USA 95:11763-11768
7. Ciminelli BM, Pompei F, Malaspina P, Hammer MF, Persichetti F, Pignatti PF, Palena A, Anagnou N, Guanti G, Jodice C, Terrenato L, Novelletto A (1995) Recurrent simple tandem repeat mutations during human Y chromosome radiation in Caucasian subpopulations. J Mol Evol 41:966-973
8. Felsenstein J (1993) PHYLIP: Phylogeny Inference Package, Version 3.5p Joseph Felsenstein and the University of Washington, Seattle
9. Goedde HW, Paik YK, Lee CC, Benkmann HG, Kriese L, Bogdanski P, Winkler M (1987) Red cell and serum protein polymorphisms in three population groups of South Korea. Gene Geogr 1:177-188
10. Hammer MF (1994) A recent insertion of an Alu element on the Y chromosome is a useful marker for human population studies. Mol Biol Evol 11:749-761
11. Hammer MF (1995) A recent common ancestry for human Y chromosomes. Nature 378:376-378
12. Hammer MF, Horai S (1995) Y chromosomal DNA variation and the peopling of Japan. Am J Hum Genet 56:951-962
13. Hammer MF, Karafet T, Rasanayagam A, Wood ET, Altheide TK, Jenkins T, Griffiths RC, Templeton AR, Zegura SL (1998) Out of Africa and back again: nested cladistic analysis of human Y chromosome variation. Mol Biol Evol 15:427-441
14. Hammer MF, Spurdle AB, Karafet T, Bonner MR, Wood ET, Novelletto A, Malaspina P, Mitchell RJ, Horai S, Jenkins T, Zegura SL (1997) The geographic distribution of human Y chromosome variation. Genetics 145:787-805
15. Hammer MF, Zegura SL (1996) The role of the Y chromosome in human evolutionary studies. Evol Anthropol 5:116-134
16. Hanihara K (1991) Dual structure model for the population history of the Japanese. Japan Review 2:1-33
17. Harihara S, Saitou N, Hirai M, Gojobori T, Park KS, Misawa S, Ellepola SB, Ishida T, Omoto K (1988) Mitochondrial DNA polymorphism among five Asian populations. Am J Hum Genet 43:134-143
18. lys intergenic region of mitochondrial DNA is relatively homogeneous in east Asian populations. Korean J Biol Sci 2:259-267
19. Hong SS, Suh JA, Chae JJ, Goh SH, Kim YS, Kim UK, Namkoong Y, Lee CC (1993) Frequency distribution of alleles at D1S80 and apo-B 3′ VNTR loci in Korean population. Mol Cells 3:457-453
20. Horai S, Murayama K, Hayasaka K, Matsubayashi S, Hattori Y, Fucharoen G, Harihara S, Park KS, Omoto K, Pan IH (1996) mtDN A polymorphism in East Asian populations, with special reference to the peopling of Japan. Am J Hum Genet 59:579-590
21. Karafet T, Knijff PD, Wood E, Ragland J, Clark A, Hammer MF (1998) Different patterns of variation at the X- and Y-chromosome-linked microsatellite loci DXYS156X and DXYS156Y in human populations. Hum Biol 70:979-992
22. Karafet T, Zegura SL, Posukh O, Osipova L, Bergen A, Long J, Goldman D, Klitz W, Harihara S, Knijff PD, Wiebe V, Griffiths RC, Templeton AR, Hammer MF (1999) Ancestral Asian source(s) of new world Y-chromosome founder haplotypes. Am J Hum Genet 64:817-831
23. Kayser M, Caglia A, Corach D, Fertwell N, Gehrig C, Graziosi G, Heidorn F, Herrmann S, Herzog B, Hidding M, Honda K, Jobling M, Krawczak M, Leim K, Meuser S, Meyer E, Oesterreich W, Pandya A, Parson W, Penacino G, Perez-Lezaun A, Piccinini A, Prinz M, Schmitt C, Schneider PM, Szibor R, Teifel-Greding J, Weichhold G, Knijff PD, Roewer L (1997) Evaluation of Y-chromosomal STRs: a multicenter study. Int J Legal Med 110:125-133
24. Kim K (1970) People and language. In Korea - its people and cultures. Hakwon-sa, Seoul
25. Kim NK (1987) The world's major languages. Croom Helm, London
26. Kim W, Shin DJ, You SA, Kim YJ (1998) Y-specific DNA polymorphisms of the YAP element and the locus DYS19 in the Korean population. J Hum Genet 43:195-198
27. Lin SJ, Tanaka K, Leonard W, Gerelsaikhan T, Dashnyam B, Nyamkhishig S, Hida A, Nakahori Y, Omoto K, Crawford MH, Nakagome Y (1994) A Y-associated allele is shared among a few ethnic groups of Asia. Jpn J Hum Genet 39:299-304
28. Melton T, Clifford S, Martinson J, Batzer M, Stoneking M (1998) Genetic evidence for the proto-Austronesian homeland in Asia: mtDNA and nuclear DNA variation in Taiwanese aboriginal tribes. Am J Hum Genet 63:1807-1823
29. Nakagome Y, Young SR, Akane A, Numabe H, Jin DK, Yamori Y, Seki S, Tamura T, Nagafuchi S, Shiono H, Nakahori Y (1992) A Y-associated allele may be characteristic of certain ethnic groups in Asia. Ann Hum Genet 56:311-314
30. Nakahori Y, Tamura T, Yamada M, Nakagome Y (1989) Two 47z [DXYS5] RFLPs on the X and the Y chromosome. Nucleic Acids Res 17:2152
31. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
32. Nei M, Roychoudhury AK (1993) Evolutionary relationships of human populations on a global scale. Mol Biol Evol 10:927-943
33. Ngo KY, Vernaud G, Johnsson C, Lucotte G, Weissenbach J (1986) A DNA probe detecting multiple haplotypes of the human Y chromosome. Am J Hum Genet 38:407-418
34. Omoto K, Saitou N (1997) Genetic origins of the Japanese: a partial support for the dual structure hypothesis. Am J Phys Anthropol 102:437-446
35. Perna NT, Batzer MA, Deininger PL, Stoneking M (1992) Alu insertion polymorphism: a new type of marker for human population studies. Hum Biol 64:641-648
36. Richards B, Skoletsky J, Shuber AP, Balfour R, Stern RC, Dorkin HL, Parad RB, Witt D, Klinger KW (1993) Multiplex PCR amplification from the CFTR gene using DNA prepared from buccal brushes/ swabs. Hum Mol Genet 2:159-163
37. Roewer L, Arnemann J, Spurr NK, Grzeschik KH, Epplen JT (1992) Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts. Hum Genet 89:389-394
38. Ruhlen M (1987) A guide to the world's languages. Stanford University Press, California
39. Saha N, Tay JSH (1992) Origin of the Koreans: a population genetic study. Am J Phys Anthropol 88:27-36
40. Saitou N, Nei M (1987) The neighbor-joining methods: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
41. Salem AH, Badr FM, Gaballah MF, Paabo S (1996) The genetics of traditional living: Y-chromosomal and mitochondrial lineages in the Sinai Peninsula. Am J Hum Genet 59:741-743
42. Sambrook F, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York
43. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
44. Santos FR, Gerelsaikhan T, Munkhtuja B, Oyunsuren T, Epplen JT, Pena SDJ (1996) Geographic differences in the allele frequencies of the human Y-linked tetranucleotide polymorphism DYS19. Hum Genet 97:309-313
45. Santos FR, Pena SDJ, Epplen JT (1993) Genetic and population study of a Y-linked tetranucleotide repeat DNA polymorphism with a simple non-isotopic technique. Hum Genet 90:655-656
46. Shin DJ, Kim YJ, Kim W (1998) PCR-based polymorphic analysis for the Y chromosome loci DYS19 and DXYS5Y (47z) in the Korean population. Korean J Biol Sci 2:281-285
47. Shinka T, Tomita K, Toda T, Kotliarova SE, Lee JW, Kuroki Y, Jin DK, Tokunaga K, Nakamura H, Nakahori Y (1999) Genetic variations on the Y chromosome in the Japanese population and implications for modern human Y chromosome lineage. J Hum Genet 44:240-245