Reduction of dimensionality in a diffusion search process and kinetics of gene expression

Physica A: Statistical Mechanics and its Applications

Volumn 277, Issue 1, 2000, Pages 71-82

  Hol Yst, Robert ^a   Blazejczyk, M ^a   Burdzy, K ^b   Goralski G ^c   Bocquet, L ^d  

^a POLISH ACADEMY OF SCIENCES   (Poland)

^b UNIVERSITY OF WASHINGTON   (United States)

^c JAGIELLONIAN UNIVERSITY   (Poland)

^d Laboratoire de Physique UMR CNRS ENSL   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DIFFUSION; GENES; MATHEMATICAL MODELS; PROTEINS; REACTION KINETICS;

GENETIC INSTRUCTION;

DNA;

EID: 0343627736     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-4371(99)00485-9     Document Type: Article

References (38)

1. B. Alberts et al., Essential Cell Biol. (Garland Publishing, New York & London) (1997) 222, 240, 222.
2. H. Lodish et al., Molecular Cell Biology, 3rd Edition, Scientific American Books, 1995, p. 144.
3. Niklov D.B.et al. Nature. 360:1992;40.
4. Struhl K. Science. 263:1994;1103.
5. Chasman D.et al. Proc. Natl. Acad. Sci. 90:1993;8174.
6. G. Adam, M. Delbrück, in: A. Rich, N. Davidson (Eds.), Structural Chemistry and Molecular Biology, (Eds.), W.H. Freeman and Company, San Francisco, 1968, p. 198.
7. Berg H., Purcell E.M. Biophys. J. 20:1977;193.
8. Sheetz M.P., Turney S., Qian H., Elson E.L. Nature. 340:1989;284.
9. Berland K.M., So P.T.C., Gratton E. Biophys. J. 68:1995;694.
10. Lee G.M., Ishihara A., Jacobson K.A. Proc. Natl. Acad. Sci. USA. 88:1991;6274.
11. Swaminathan R., Hoang C.P., Verkman A.S. Biophys. J. 72:1997;1900.
12. Dice J.F., Goldberg A.L. Arch. Biochem. Biophys. 170:1975;214.
13. E.A. Nigg, Nature, 386 (1997) 779 (and references therein).
14. B. Alberts et al., Molecular Biology of the Cell, 3rd Edition, Garland Publishing Inc., New York, London, 1994, pp. 421, 563.
15. Smoluchowski M. Z. Phys. Chem. 92:1917;129.
16. P.W. Atkins, Physical Chemistry, 4th Edition, Oxford University Press, Oxford, 1990, p. 848.
17. Zhang R.et al. Nature. 327:1987;591.
18. Pincet F.et al. Mod. Phys. Lett. B. 10:1996;81.
19. Riggs A.D., Burgeois S., Cohn M. J. Mol. Biol. 53:1970;401.
20. von Hippel P.H., Berg O.G. J. Biol. Chem. 264:1989;675.
21. M.A. Surby, N.O. Reich, Biochemistry 35 (1996) 2201; 2208.
22. Jeltsch A., Wenz Ch., Stahl F., Pingoud A. EMBO. 15:1996;5104.
23. van Saarloos W. Phys. Rev. A. 37:1988;211.
24. W. van Saarloos, Phys. Rev. A. 39 (1989) 6367 and references therein.
25. Helm R., Cubitt A.B., Tsien R.Y. Nature. 373:1995;663.
26. Ogawa H.et al. Proc. Natl. Acad. Sci. USA. 92:1995;11 899.
27. Gerdes H., Kaether C. FEBS Lett. 389:1996;44.
28. Livolant F. Physica A. 176:1991;117.
29. Livolant F., Leforestier A. Prog. Polym. Sci. 21:1996;1115.
30. Landh T. FEBS Lett. 369:1995;13.
31. Glanz J. Science. 276:1997;678.
32. Maniotis A., Chen C., Ingber D.E. Proc. Natl. Acad. Sci. 94:1997;849.
33. Góźdź W., Hol yst R. Macromol. Theory Simul. 5:1996;321.
34. Góźdź W., Hol yst R. Phys. Rev. Lett. 76:1996;2726.
35. Góźdź W., Hol yst R. Phys. Rev. E. 54:1996;5012.
36. Blum J.J.et al. Biophys. J. 56:1989;995.
37. Elowitz M.B., Surette M.G., Wolf P.E., Stock J.P., Leibler S. J. Bacteriol. 181:1999;197.
38. Saxton M.J. Biophys. J. 66:1994;394.