Branched structures in the intracellular DNA of herpes simplex virus type 1

Journal of Virology

Volumn 70, Issue 5, 1996, Pages 3169-3175

  Severini, Alberto ^a   Scraba, Douglas G ^a   Tyrrell, D Lorne J ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

ANIMAL CELL; ARTICLE; CELL MIGRATION; DNA REPLICATION; GENE REARRANGEMENT; HERPES SIMPLEX VIRUS 1; NONHUMAN; PRIORITY JOURNAL; PROGENY; SUCROSE GRADIENT; VIRION; VIRUS GENOME; VIRUS MORPHOLOGY; VIRUS REPLICATION;

EID: 0029985571     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.70.5.3169-3175.1996     Document Type: Article

References (51)

1. Addison, C., F. J. Rixon, J. W. Palfreyman, M. O'Hara, and V. G. Preston. 1984 Characterisation of a herpes simplex virus type 1 mutant which has a temperature-sensitive defect in penetration of cells and assembly of capsids Virology 138:246-259.
2. Addison, C. F., F. J. Rixon, and V. G. Preston. 1990. Herpes simplex virus type 1 UL28 gene is important for the formation of mature capsids. J. Gen. Virol 71:2377-2384
3. Al-Kobaisi, M. F., F. J. Rixon, I. McDougall, and V. G. Preston. 1991. The herpes simplex virus UL33 gene product is required for the assembly of full capsids. Virology 180:380-388.
4. Brewer, B. J., and W. L. Fangman. 1987. The localization of replication origins on ARS plasmids in S cerevisiae. Cell 51:463-471.
5. Chou, J., and B. Roizman. 1989. Characterization of DNA sequence-common and sequence-specific proteins binding to cis-acting sites for cleavage of the terminal a sequence of the herpes simplex virus 1 genome. J. Virol 63: 1059-1068.
6. Danovich, R. M., and N. Frenkel. 1988 Herpes simplex virus induces the replication of foreign DNA. Mol. Cell Biol. 8:3272-3281.
7. Deiss, L. P., L. Chou, and N. Frenkel. 1986. Functional domains within the a sequence involved in the cleavage-packaging of herpes simplex virus DNA. J. Virol. 59:605-618.
8. Delius, H., and J. B. Clements. 1976. A partial denaturation map of herpes simplex virus type 1 DNA: evidence for inversions of the unique DNA regions. J. Gen. Virol. 33:125-133.
9. de Massy, B., and R. A. Weisberg. 1987. Gene 3 endonuclease of bactcrio-phage T7 resolves conformationally branched structures, in double-stranded DNA. J. Mol. Biol 193:359-376.
10. Desai, P., N. A. DeLuca, J. C. Glorioso, and S. Person. 1993. Mutations in herpes simplex virus type 1 genes encoding VP5 and VP23 abrogate capsid formation and cleavage of replicated DNA. J. Virol. 67:1357-1364.
11. Dickie, P., G. McFadden, and A. R. Morgan. 1987. The site-specific cleavage of synthetic Holliday junction analogs and related branched DNA structures of bacteriophage T7 endonuclease 1 J. Biol. Chem. 262:14826-14836.
12. Dunderdale, H. J., F. E. Benson, C. A. Parsons. G. J. Sharpies, R. G. Lloyd, and S. C. West. 1991. Formation and resolution of recombination intermediates by E. coli recA and ruvC proteins. Nature (London) 354:506-5111.
13. Dutch, R. E., V. Blanchi, and I. R. Lehman. 1995. Herpes simplex virus type 1 DNA replication is specifically required for high-frequency homologous recombination between repeated sequences. J. Virol. 69:3084-3089
14. Dutch, R. E., R. C. Bruckner, E. S. Mocarski, and I. R. Lehman. 1992. Herpes simplex virus type 1 recombination: role of DNA replication and viral a sequences J. Virol. 66:277-285.
15. Dutch, R. E., B. V. Zemelman, and I. R. Lehman. 1994. Herpes simplex virus type 1 recombination: the U-DRl region is required for high-level a-sequence-mediated recombination J. Virol. 68:3733-3741
16. Futcher, A. B. 1985. Copy amplification of the 2 micron circle plasmid of Saccharomyces cerevisiae. J. Theor Biol. 119:197-204.
17. Garter, D. A., S. M. Beverley, and D. M. Coen. 1993. Demonstration of circularization of herpes simplex virus DNA following infection using pulsed field gel electrophoresis Virology 197:459-462.
18. Hayward, G. S., R. J. Jacob, S. C. Wadsworth, and B. Roizman. 1975. Anatomy of herpes simplex virus DNA: evidence for four populations of molecules that differ in the relative orientations of their long and short components Proc Natl. Acad. Sci. USA 72:4243-4247.
19. Huffman, P. J. 1981 Mechanism of degradation of duplex DNA by the DNase induced by herpes simplex virus J. Virol. 38:1005-1014.
20. Huffman, P. J., and Y.-C. Cheng. 1978. The deoxyribonuclease induced after infection of KB cells by herpes simplex virus type 1 or type 2 I. Purification and characterization of the enzyme. J. Biol Chem. 253:3557-3562.
21. Jacob, R. J., L. S. Morse, and B. Roizman. 1979. Anatomy of herpes simplex virus DNA XII. Accumulation of head-to-tail concatemers in nuclei of infected cells and their role in the generation of the four isomeric arrangements of viral DNA. J. Virol. 29:448-457.
22. Jacob, R. J., and B. Roizman. 1977 Anatomy of herpes simplex virus DNA VIII. Properties of the replicating DNA. J Virol. 23:394-411.
23. Jongeneel, C. V., and S. L. Bachenheimer. 1981 Structure of replicating herpes simplex virus DNA. J. Virol. 39:656-660
24. Lurz, R., M. Grote, J. Dijk, R. Reinhardt, and B. Dobrinski. 1986. Electron microscopy study of DNA complexes with proteins from the archacobacterium Sulfolobus acidocaldarius. EMBO J. 5:3715-3721.
25. 24a.Martinez, R., R. Sarisky, P. C. Weber, and S. K. Weller. Unpublished data
26. McGeoch, D. J., M. A. Darlymple, A. J. Davinson, A. Dolan, M. C. Frame, D. McNab, L. J. Perry, J. E. Scott, and P. Taylor. 1988. The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1. J. Gen. Virol. 69:1531-1574.
27. Mocarski, E. S., and B. Roizman. 1982. Herpesvirus-dependent amplification and inversion of cell-associated viral thymidine kinase gene flanked by viral a sequences and linked to an origin of viral DNA replication. Proc. Natl. Acad. Sci. USA 79:5626-5630.
28. Morgan, A. R., D. H. Evans, J. S. Lee, and D. E. Pulleyblank. 1979. Review: ethidium fluorescence assay. Part II. Enzymatic studies and DNA-protein interactions. Nucleic Acids Res. 7:571-594.
29. Morgan, A. R., and A. Severini. 1990 Interconversion of replication and recombination structures: implications for terminal repeats and concatemrrs. J. Theor. Biol. 144:195-202.
30. Mosig, G. 1987. The essential role of recombination in phage T4 growth. Annu. Rev. Genet, 21:347-371.
31. Ooka, T., M. de Turenne, G. de The, and J. Daillie. 1984. Epstein-Barr virus-specific DNase activity in nonproducer Raji cells after treatment with 12-O-tetradecanoylphorbol-13-acetate and sodium butyrate. J. Virol. 49: 626-628.
32. Poffenberger, K. L., and B. Roizman. 1985. A noninverting genome of a viable herpes simplex virus 1: presence of head-to-tail linkages in packaged genomes and requirements for circularization after infection. J. Virol. 53: 587-595.
33. Preston, V. G., J. A. V. Coates, and F. J. Rixon. 1983. Identification and characterization of a herpes simplex virus gene product required for encapsidation of virus DNA. J. Virol. 45:1056-1064.
34. Sarisky, R. T., and P. C. Weber. 1994. Requirement for double-strand breaks but not for specific DNA sequences in herpes simplex virus type 1 genome isomerization events. J. Virol. 68:34-47.
35. Severini, A., A. R. Morgan, D. R. Tovell, and D. L. J. TyrrelI. 1994. Study of the structure of replicative intermediates of HSV-1 DNA by pulsed-field gel electrophoresis. Virology 200:428-435.
36. Shao, L., L. M. Rapp, and S. K. Weller. 1993. Herpes simplex virus 1 alkaline nuclease is required for efficient egress of capsids from the nucleus. Virology 196:146-162.
37. Sharples, G. J., and R. G. Lloyd. 1991. Resolution of Holliday junctions in Escherichia coli, identification of the ruvC gene product as a 19-kilodalton protein. J Bacteriol 173:7711-7715.
38. Sheldrick, P., and N. Berthelot. 1974. Inverted repetitions in the chromosome of herpes simplex virus. Cold Spring Harbor Symp. Quant. Biol. 39: 667-678
39. Sherman, G., and S. L. Bachenheimer. 1987. DNA processing in temperature-sensitive morphogenic mutants of HSV-1. Virology 158:427-430.
40. Smiley, J. R., B. S. Fong, and W.-C. Leung. 1981. Construction of a double-jointed herpes simplex viral DNA molecule: inverted repeats are required for segment inversion and direct repeats promote deletions. Virology 113: 345-362.
41. Smiley, J. R., M. J. Wagner, W. P. Summers, and W. C. Summers. 1980. Genetic and physical evidence for the polarity of transcription of the thymidine kinase gene of herpes simplex virus. Virology 102:83-93
42. Spaete, R. R., and N. Frenkel. 1982. The herpes simplex virus amplicon: a new eukaryotic defective-virus cloning-amplifying vector. Cell 30:295-304.
43. Stow, N. D. 1992. Herpes simplex virus type 1 origin-dependent DNA replication in insect cells using recombinant baculoviruses. J. Gen Virol. 73: 313-321.
44. Strobel-Fidler, M., and B. Francke. 1980. Alkaline deoxyribomiclease induced by herpes simplex virus type 1: composition and properties of the purified enzyme. Virology 103:493-501.
45. Varmuza, S. L., and J. R. Smiley. 1985. Signals for site-specific cleavage of HSV DNA: maturation involves two separate cleavage events at sites distal to the recognition sequences Cell 41:793-802.
46. Vlazny, D. A., and N. Frenkel. 1981. Replication of herpes simplex virus DNA: localization of replication recognition signals within defective virus genomes. Proc. Natl. Acad. Sci. USA 78:742-746.
47. Walboamers, J- M. M., and J. T. Scbegget. 1976. A new method for the isolation of herpes simplex virus type 2 DNA. Virology 74:256-258.
48. Weber, P. C., M. D. Challberg, N. J. Nelson, M. Levine, and J. C. Glorioso. 1988. Inversion events in the HSV-1 genome are directly mediated by the viral DNA replication machinery and lack sequence specificity. Cell 54: 369-381.
49. Weller, S. K., M. R. Seghatoleslami, L. Shao, D. Rowse, and E. P. Carmichael. 1990. The herpes simplex virus type 1 alkaline nuclease is not essential for viral DNA synthesis: isolation and characterization of a lacZ insertion mutant. J. Gen. Virol. 71:2941-2952.
50. Wu, C. A., N. J. Nelson, D. J. McGeoch, and M. D. Challberg. 1988. Identification of herpes simplex virus type 1 genes required for origin-dependent DNA synthesis. J Virol. 62:435-443.
51. Zhang, X., S. Efstathinu, and A. Simmons. 1994. Identification of novel herpes simplex virus replicative intermediates by field inversion gel electro-phoresis: implications for viral DNA amplification strategies. Virology 202: 530-539.