Qβ Replicase Discriminates between Legitimate and Illegitimate Templates by Having Different Mechanisms of Initiation

Journal of Biological Chemistry

Volumn 278, Issue 45, 2003, Pages 44139-44146

  Ugarov, Victor I ^c   Demidenko, Alexander A ^a   Chetverin, Alexander B ^b  

^a UNIVERSITY OF CHICAGO   (United States)

^b INSTITUTE OF PROTEIN RESEARCH   (Russian Federation)

^c NONE

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; ENZYMES; ORGANIC ACIDS; RNA;

TERMINAL ELONGATION;

BIOCHEMISTRY;

AURINTRICARBOXYLIC ACID; ENZYME; GUANOSINE TRIPHOSPHATE; OLIGONUCLEOTIDE; RNA; RNA DIRECTED RNA POLYMERASE; Q BETA REPLICASE; RECOMBINANT PROTEIN; RESTRICTION ENDONUCLEASE; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ARTICLE; BACTERIOPHAGE; CONFORMATIONAL TRANSITION; ENZYME CONFORMATION; IN VITRO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; REGULATORY MECHANISM; RNA CLEAVAGE; RNA REPLICATION; RNA STRUCTURE; RNA SYNTHESIS; RNA TRANSLATION; BINDING SITE; CHEMISTRY; COLIPHAGE; CONFORMATION; DNA TEMPLATE; ENZYME SPECIFICITY; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROTEIN CONFORMATION;

BACTERIOPHAGE QBETA; UNIDENTIFIED BACTERIOPHAGE;

ALLOLEVIVIRUS; AURINTRICARBOXYLIC ACID; BASE SEQUENCE; BINDING SITES; DEOXYRIBONUCLEASE BAMHI; DEOXYRIBONUCLEASE ECORI; DNA RESTRICTION ENZYMES; ESCHERICHIA COLI; GUANOSINE TRIPHOSPHATE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PROTEIN CONFORMATION; Q BETA REPLICASE; RECOMBINANT PROTEINS; RNA; SUBSTRATE SPECIFICITY; TEMPLATES, GENETIC;

EID: 0242666438     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M305992200     Document Type: Article

References (53)

1. Blumenthal, T., and Carmichael, G. G. (1979) Annu. Rev. Biochem. 48, 525-548
2. Van Duin, J. (1988) in The Bacteriophages, Vol. 1 (Calendar, R., ed) pp. 117-167, Plenum Press, New York
3. Chetverin, A. B., and Spirin, A. S. (1995) Prog. Nucleic Acids Res. Mol. Biol. 51, 225-270
4. Brown, D., and Gold, L. (1995) Biochemistry 34, 14775-14782
5. Zamora, H., Luce, R., and Biebricher, C. K. (1995) Biochemistry 34, 1261-1266
6. Chetverin, A. B., Chetverina, H. V., Demidenko, A. A., and Ugarov, V. I. (1997) Cell 88, 503-513
7. Chetverina, H. V., Demidenko, A. A., Ugarov, V. I., and Chetverin, A. B. (1999) FEBS Lett. 450, 89-94
8. Weissmann, C. (1974) FEBS Lett. 40, S10-S18
9. Chetverin, A. B., Chetverina, H. V., and Munishkin, A. V. (1991) J. Mol. Biol. 222, 3-9
10. Chetverina, H. V., and Chetverin, A. B. (1993) Nucleic Acids Res. 21, 2349-2353
11. Haruna, I., and Spiegelman, S. (1965) Proc. Natl. Acad. Sci. U. S. A. 54, 579-587
12. Tretheway, D. M., Yoshinari, S., and Dreher, T. W. (2001) J. Virol. 75, 11373-11383
13. Feix, G., and Sano, H. (1975) Eur. J. Biochem. 58, 59-64
14. Kuppers, B., and Sumper, M. (1975) Proc. Natl. Acad. Sci. U. S. A. 72, 2640-2643
15. Hori, K., Eoyang, L., Banerjee, A. K., and August, J. T. (1967) Proc. Natl. Acad. Sci. U. S. A. 57, 1790-1797
16. Palmenberg, A., and Kaesberg, P. (1974) Proc. Natl. Acad. Sci. U. S. A. 71, 1371-1375
17. Weissmann, C., Billeter, M. A., Goodman, H. M., Hindley, J., and Weber, H. (1973) Annu. Rev. Biochem. 42, 303-328
18. Yoshinari, S., and Dreher, T. W. (2000) Virology 271, 363-370
19. Rensing, U., and August, J. T. (1969) Nature 224, 853-856
20. Blumenthal, T. (1980) Proc. Natl. Acad. Sci. U. S. A. 77, 2601-2605
21. Yoshinari, S., Nagy, P. D., Simon, A. E., and Dreher, T. W. (2000) RNA (N. Y.) 6, 698-707
22. Biebricher, C. K., and Luce, R. (1993) Biochemistry 32, 4848-4854
23. Brown, D., and Gold, L. (1995) Biochemistry 34, 14765-14774
24. Brown, D., and Gold, L. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 11558-11562
25. Preuss, R., Dapprich, J., and Walter, N. G. (1997) J. Mol. Biol. 273, 600-613
26. Axelrod, V. D., Brown, E., Priano, C., and Mills, D. R. (1991) Virology 184, 595-608
27. Weissmann, C., Feix, G., and Slor, H. (1968) Cold Spring Harb. Symp. Quant. Biol. 33, 83-100
28. Munishkin, A. V., Voronin, L. A., Ugarov, V. I., Bondareva, L. A., Chetverina, H. V., and Chetverin, A. B. (1991) J. Mol. Biol. 221, 463-472
29. Berestowskaya, N. H., Vasiliev, V. D., Volkov, A. A., and Chetverin, A. B. (1988) FEBS Lett. 228, 263-267
30. Shaklee, P. N., Miglietta, J. J., Palmenberg, A. C., and Kaesberg, P. (1988) Virology 163, 209-213
31. Blumenthal, T. (1979) Methods Enzymol. 60, 628-638
32. Morozov, I. Y., Ugarov, V. I., Chetverin, A. B., and Spirin, A. S. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 9325-9329
33. Steinschneider, A., and Fraenkel-Conrat, H. (1966) Biochemistry 5, 2729-2734
34. Sambrook, J., and Russell, D. W. (2001) Molecular Cloning. A Laboratory Manual, 3rd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
35. Igloi, G. L. (1983) Anal. Biochem. 134, 184-188
36. Gaillard, C., and Strauss, F. (1990) Nucleic Acids Res. 18, 378
37. Jaeger, J. A., Turner, D. H., and Zuker, M. (1990) Methods. Enzymol. 183, 281-306
38. Biebricher, C. K., and Luce, R. (1992) EMBO J. 11, 5129-5135
39. Vogt, V. M. (1973) Eur. J. Biochem. 33, 192-200
40. Ackermann, M., and Padmanabhan, R. (2001) J. Biol. Chem. 276, 39926-39937
41. Feix, G., and Hake, H. (1975) Biochem. Biophys. Res. Commun. 65, 503-509
42. Blumenthal, T., and Landers, T. A. (1973) Biochem. Biophys. Res. Commun. 55, 680-688
43. Gonzalez, R. G., Haxo, R. S., and Schleich, T. (1980) Biochemistry 19, 4299-4303
44. Brown, S., and Blumenthal, T. (1976) Proc. Natl. Acad. Sci. U. S. A. 73, 1131-1135
45. Silverman, P. (1973) Arch. Biochem. Biophys. 157, 222-233
46. Kochetkov, S. N., Rusakova, E. E., and Tunitskaya, V. L. (1998) FEBS Lett. 440, 264-267
47. Mooney, R. A., and Landick, R. (1999) Cell 98, 687-690
48. Chetverin, A. B. (1999) FEBS Lett. 460, 1-5
49. Palasingam, K., and Shaklee, P. N. (1992) J. Virol. 66, 2435-2442
50. Werner, M. (1991) Biochemistry 30, 5832-5838
51. Feix, G., Slor, H., and Weissmann, C. (1967) Proc. Natl. Acad. Sci U. S. A. 57, 1401-1408
52. Biebricher, C. K., Diekmann, S., and Luce, R. (1982) J. Mol. Biol. 154, 629-648
53. De Rijk, P., Wuyts, J., and De Wachter, R. (2003) Bioinformatics 19, 299-300