RankViaContact: Ranking and visualization of amino acid contacts

Bioinformatics

Volumn 19, Issue 16, 2003, Pages 2161-2162

  Shen, Bairong ^a   Vihinen, Mauno ^a,b  

^a UNIVERSITY OF TAMPERE   (Finland)

^b TAMPERE UNIVERSITY HOSPITAL   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; SOLVENT;

AMINO ACID SEQUENCE; ARTICLE; CALCULATION; COMPUTER AIDED DESIGN; COMPUTER PROGRAM; ENERGY; GENE MUTATION; GENETIC STABILITY; IMAGING SYSTEM; INTERNET; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; RATING SCALE;

EID: 0242391985     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg293     Document Type: Article

References (7)

1. Baraldi,E., Carugo,K.D., Hyvönen,M., Lo Surdo,P.L., Riley,A.M., Potter,B.V., O'Brien,R., Ladbury,J.E. and Saraste,M. (1999) Structure of the PH domain from Bruton's tyrosine kinase in complex with inositol 1,3,4,5-tetrakisphosphate. Structure Fold. Des., 7, 449-460.
2. Beadle,B.M. and Shoichet,B.K. (2002) Structural bases of stability-function tradeoffs in enzymes. J. Mol. Biol., 321, 285-296.
3. Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
4. Sayle,R.A. and Milner-White,E.J. (1995) RASMOL: biomolecular graphics for all. Trends Biochem. Sci., 20, 374.
5. Sobolev,V., Sorokine,A., Prilusky,J., Abola,E.E. and Edelman,M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332.
6. Vihinen,M. (1987) Relationship of protein flexibility to thermostability. Protein Eng., 1, 477-480.
7. Zhang,C. and Kim,S.H. (2000) Environment-dependent residue contact energies for proteins. Proc. Natl Acad. Sci. USA, 97, 2550-2555.