-
1
-
-
0036166644
-
Early gene m18, a novel player in the immune response to murine cytomegalovirus
-
Holtappels R., Grzimek N.K., Thomas D., Reddehase M.J. Early gene m18, a novel player in the immune response to murine cytomegalovirus. J. Gen. Virol. 83:2002;311-316.
-
(2002)
J. Gen. Virol.
, vol.83
, pp. 311-316
-
-
Holtappels, R.1
Grzimek, N.K.2
Thomas, D.3
Reddehase, M.J.4
-
2
-
-
0036132831
-
Two antigenic peptides from genes m123 and m164 of murine cytomegalovirus quantitatively dominate CD8 T-cell memory in the H-2d haplotype
-
Holtappels R., Thomas D., Podlech J., Reddehase M.J. Two antigenic peptides from genes m123 and m164 of murine cytomegalovirus quantitatively dominate CD8 T-cell memory in the H-2d haplotype. J. Virol. 76:2002;151-164.
-
(2002)
J. Virol.
, vol.76
, pp. 151-164
-
-
Holtappels, R.1
Thomas, D.2
Podlech, J.3
Reddehase, M.J.4
-
3
-
-
0027656984
-
PREDITOP, a program for antigenicity prediction
-
Pellequer J.L., Westhof E. PREDITOP, a program for antigenicity prediction. J. Mol. Graph. 11:1993;204-210.
-
(1993)
J. Mol. Graph
, vol.11
, pp. 204-210
-
-
Pellequer, J.L.1
Westhof, E.2
-
4
-
-
0032829397
-
Predictive estimation of protein linear epitopes by using the program PEOPLE
-
Alix A.J. Predictive estimation of protein linear epitopes by using the program PEOPLE. Vaccine. 18:1999;311-314.
-
(1999)
Vaccine
, vol.18
, pp. 311-314
-
-
Alix, A.J.1
-
5
-
-
0022668738
-
Location of 'continuous' antigenic determinants in the protruding regions of proteins
-
Thornton J.M., Edwards M.S., Taylor W.R., Barlow D.J. Location of 'continuous' antigenic determinants in the protruding regions of proteins. EMBO J. 5:1986;409-413.
-
(1986)
EMBO J.
, vol.5
, pp. 409-413
-
-
Thornton, J.M.1
Edwards, M.S.2
Taylor, W.R.3
Barlow, D.J.4
-
6
-
-
0005854633
-
Computational vaccine design
-
D.R. Flower (Ed.), RSC Publications, London
-
D.R. Flower, I.A. Doytchinova, K. Paine, P. Taylor, M.J. Blythe, D. Lamponi, C. Zygouri, P. Guan, H. McSparron, H. Kirkbride, Computational vaccine design, in: D.R. Flower (Ed.), Drug Design, Cutting Edge Approaches, RSC Publications, London, 2002.
-
(2002)
Drug Design, Cutting Edge Approaches
-
-
Flower, D.R.1
Doytchinova, I.A.2
Paine, K.3
Taylor, P.4
Blythe, M.J.5
Lamponi, D.6
Zygouri, C.7
Guan, P.8
McSparron, H.9
Kirkbride, H.10
-
7
-
-
0036589852
-
An additive method for the prediction of protein-peptide binding affinity. Application to the MHC class I molecule HLA-A*0201
-
Doytchinova I.A., Blythe M.J., Flower D.R. An additive method for the prediction of protein-peptide binding affinity. Application to the MHC class I molecule HLA-A*0201. J. Proteome Res. 1:2002;263-272.
-
(2002)
J. Proteome Res.
, vol.1
, pp. 263-272
-
-
Doytchinova, I.A.1
Blythe, M.J.2
Flower, D.R.3
-
8
-
-
0036211926
-
JenPep, a database of quantitative functional peptide data for immunology
-
Blythe M.J., Doytchinova I.A., Flower D.R. JenPep, a database of quantitative functional peptide data for immunology. Bioinformatics. 18:2002;434-439.
-
(2002)
Bioinformatics
, vol.18
, pp. 434-439
-
-
Blythe, M.J.1
Doytchinova, I.A.2
Flower, D.R.3
-
9
-
-
0015861774
-
Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50% inhibition (I50) of an enzymatic reaction
-
Cheng Y., Prusoff W.H. Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50% inhibition (I50) of an enzymatic reaction. Biochem. Pharmacol. 22:1973;3099-3108.
-
(1973)
Biochem. Pharmacol.
, vol.22
, pp. 3099-3108
-
-
Cheng, Y.1
Prusoff, W.H.2
-
10
-
-
85030951929
-
-
Tripos Inc., 1699 Hanley Road, St. Louis, MO 63144
-
SYBYL 6.7. Tripos Inc., 1699 Hanley Road, St. Louis, MO 63144.
-
SYBYL 6.7
-
-
-
11
-
-
0027672324
-
Sample-distance partial least squares: PLS optimized for many variables, with application to CoMFA
-
Bush B.L., Nachbar R.B. Jr. Sample-distance partial least squares: PLS optimized for many variables, with application to CoMFA. J. Comput. Aided Mol. Des. 7:1993;587-619.
-
(1993)
J. Comput. Aided Mol. Des.
, vol.7
, pp. 587-619
-
-
Bush, B.L.1
Nachbar Jr., R.B.2
-
12
-
-
0033556246
-
Decamer-like conformation of a nona-peptide bound to HLA-B*3501 due to non-standard positioning of the C terminus
-
Menssen R., Orth P., Ziegler A., Saenger W. Decamer-like conformation of a nona-peptide bound to HLA-B*3501 due to non-standard positioning of the C terminus. J. Mol. Biol. 285:1999;645-653.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 645-653
-
-
Menssen, R.1
Orth, P.2
Ziegler, A.3
Saenger, W.4
-
13
-
-
0029965954
-
An altered position of the alpha 2 helix of MHC class I is revealed by the crystal structure of HLA-B*3501
-
Smith K.J., Reid S.W., Stuart D.I., McMichael A.J., Jones E.Y., Bell J.I. An altered position of the alpha 2 helix of MHC class I is revealed by the crystal structure of HLA-B*3501. Immunity. 4:1996;203-213.
-
(1996)
Immunity
, vol.4
, pp. 203-213
-
-
Smith, K.J.1
Reid, S.W.2
Stuart, D.I.3
Mcmichael, A.J.4
Jones, E.Y.5
Bell, J.I.6
-
14
-
-
0028966203
-
Motifs and supermotifs for MHC class II binding peptides
-
Sinigaglia F., Hammer J. Motifs and supermotifs for MHC class II binding peptides. J. Exp. Med. 181:1995;449-451.
-
(1995)
J. Exp. Med.
, vol.181
, pp. 449-451
-
-
Sinigaglia, F.1
Hammer, J.2
-
16
-
-
0141507084
-
The HLA-A2-supermotif: A QSAR definition
-
Doytchinova I.A., Flower D.R. The HLA-A2-supermotif: A QSAR definition. J. Comp. Biol. 1:2003;2648-2654.
-
(2003)
J. Comp. Biol.
, vol.1
, pp. 2648-2654
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
17
-
-
2942524864
-
Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis
-
Sette A., Buus S., Appella E., Smith J.A., Chesnut R., Miles C., Colon S.M., Grey H.M. Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis. Proc. Natl. Acad. Sci. U.S.A. 86:1989;3296-3300.
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 3296-3300
-
-
Sette, A.1
Buus, S.2
Appella, E.3
Smith, J.A.4
Chesnut, R.5
Miles, C.6
Colon, S.M.7
Grey, H.M.8
-
18
-
-
0028180115
-
HLA-B*3501-peptide interactions: Role of anchor residues of peptides in their binding to HLA-B*3501 molecules
-
Takamiya Y., Schonbach C., Nokihara K., Yamaguchi M., Ferrone S., Kano K., Egawa K., Takiguchi M. HLA-B*3501-peptide interactions: role of anchor residues of peptides in their binding to HLA-B*3501 molecules. Int. Immunol. 6:1994;255-261.
-
(1994)
Int. Immunol.
, vol.6
, pp. 255-261
-
-
Takamiya, Y.1
Schonbach, C.2
Nokihara, K.3
Yamaguchi, M.4
Ferrone, S.5
Kano, K.6
Egawa, K.7
Takiguchi, M.8
-
19
-
-
0028842070
-
Several HLA alleles share overlapping peptide specificities
-
Sidney J., del Guercio M.F., Southwood S., Engelhard V.H., Appella E., Rammensee H.G., Falk K., Rotzschke O., Takiguchi M., Kubo R.T. Several HLA alleles share overlapping peptide specificities. J. Immunol. 154:1995;247-259.
-
(1995)
J. Immunol.
, vol.154
, pp. 247-259
-
-
Sidney, J.1
Del Guercio, M.F.2
Southwood, S.3
Engelhard, V.H.4
Appella, E.5
Rammensee, H.G.6
Falk, K.7
Rotzschke, O.8
Takiguchi, M.9
Kubo, R.T.10
-
20
-
-
0033388725
-
SYFPEITHI: Database for MHC ligands and peptide motifs
-
Rammensee H., Bachmann J., Emmerich N.P., Bachor O.A., Stevanovic S. SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics. 50:1999;213-219.
-
(1999)
Immunogenetics
, vol.50
, pp. 213-219
-
-
Rammensee, H.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
21
-
-
0029019852
-
A computer program for predicting possible cytotoxic T lymphocyte epitopes based on HLA class I peptide-binding motifs
-
D'Amaro J., Houbiers J.G., Drijfhout J.W., Brandt R.M., Schipper R., Bavinck J.N., Melief C.J., Kast W.M. A computer program for predicting possible cytotoxic T lymphocyte epitopes based on HLA class I peptide-binding motifs. Hum. Immunol. 43:1995;13-18.
-
(1995)
Hum. Immunol.
, vol.43
, pp. 13-18
-
-
D'amaro, J.1
Houbiers, J.G.2
Drijfhout, J.W.3
Brandt, R.M.4
Schipper, R.5
Bavinck, J.N.6
Melief, C.J.7
Kast, W.M.8
-
22
-
-
0027304399
-
Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules
-
Ruppert J., Sidney J., Celis E., Kubo R.T., Grey H.M., Sette A. Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules. Cell. 74:1994;929-934.
-
(1994)
Cell
, vol.74
, pp. 929-934
-
-
Ruppert, J.1
Sidney, J.2
Celis, E.3
Kubo, R.T.4
Grey, H.M.5
Sette, A.6
-
23
-
-
0027973079
-
The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes
-
Sette A., Vitiello A., Reherman B., Fowler P., Nayersina R., Kast W.M., Melief C.J., Oseroff C., Yuan L., Ruppert J. The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes. J. Immunol. 153:1994;5586-5592.
-
(1994)
J. Immunol.
, vol.153
, pp. 5586-5592
-
-
Sette, A.1
Vitiello, A.2
Reherman, B.3
Fowler, P.4
Nayersina, R.5
Kast, W.M.6
Melief, C.J.7
Oseroff, C.8
Yuan, L.9
Ruppert, J.10
-
24
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side chains
-
Parker K.C., Bednarek M.A., Coligan J.E. Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side chains. J. Immunol. 152:1994;163-175.
-
(1994)
J. Immunol.
, vol.152
, pp. 163-175
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
25
-
-
84960869659
-
An automated approach to modelling class II MHC alleles and predicting peptide binding
-
IEEE Computer Society Press, in press
-
M.T. Swain, A.J. Brooks, G.J.L. Kemp, An automated approach to modelling class II MHC alleles and predicting peptide binding, in: Proceedings of the Second IEEE International Symposium on Bio-Informatics and Biomedical Engineering, IEEE Computer Society Press, in press.
-
Proceedings of the Second IEEE International Symposium on Bio-Informatics and Biomedical Engineering
-
-
Swain, M.T.1
Brooks, A.J.2
Kemp, G.J.L.3
-
26
-
-
0035699902
-
From combinatorial libraries to MHC ligand motifs, T-cell superagonists and antagonists
-
Fleckenstein B., von der Mulbe F., Wessels J., Niethammer D., Wiesmuller K.H. From combinatorial libraries to MHC ligand motifs, T-cell superagonists and antagonists. Jung G. Biologicals. 29:2001;179-181.
-
(2001)
Jung G. Biologicals
, vol.29
, pp. 179-181
-
-
Fleckenstein, B.1
Von Der Mulbe, F.2
Wessels, J.3
Niethammer, D.4
Wiesmuller, K.H.5
-
27
-
-
0034176020
-
Identification of a MHC class II-restricted human gp100 epitope using DR4-IE transgenic mice
-
Touloukian C.E., Leitner W.W., Topalian S.L., Li Y.F., Robbins P.F., Rosenberg S.A., Restifo N.P. Identification of a MHC class II-restricted human gp100 epitope using DR4-IE transgenic mice. J. Immunol. 164:2000;3535-3542.
-
(2000)
J. Immunol.
, vol.164
, pp. 3535-3542
-
-
Touloukian, C.E.1
Leitner, W.W.2
Topalian, S.L.3
Li, Y.F.4
Robbins, P.F.5
Rosenberg, S.A.6
Restifo, N.P.7
-
28
-
-
0036137241
-
ProPred, prediction of HLA-DR binding sites
-
Singh H., Raghava G.P. ProPred, prediction of HLA-DR binding sites. Bioinformatics. 17:2001;1236-1237.
-
(2001)
Bioinformatics
, vol.17
, pp. 1236-1237
-
-
Singh, H.1
Raghava, G.P.2
-
29
-
-
0035903287
-
Structural features of peptide analogs of human histocompatibility leukocyte antigen class I epitopes that are more potent and immunogenic than wild-type peptide
-
Tangri S., Ishioka G.Y., Huang X., Sidney J., Southwood S., Fikes J., Sette A. Structural features of peptide analogs of human histocompatibility leukocyte antigen class I epitopes that are more potent and immunogenic than wild-type peptide. J. Exp. Med. 194:2001;833-846.
-
(2001)
J. Exp. Med.
, vol.194
, pp. 833-846
-
-
Tangri, S.1
Ishioka, G.Y.2
Huang, X.3
Sidney, J.4
Southwood, S.5
Fikes, J.6
Sette, A.7
-
30
-
-
0023192524
-
Peptide quantitative structure-activity relationships, a multivariate approach
-
Hellberg S., Sjostrom M., Skagerberg B., Wold S. Peptide quantitative structure-activity relationships, a multivariate approach. J. Med. Chem. 30:1987;1126-1135.
-
(1987)
J. Med. Chem.
, vol.30
, pp. 1126-1135
-
-
Hellberg, S.1
Sjostrom, M.2
Skagerberg, B.3
Wold, S.4
-
31
-
-
0032474777
-
New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids
-
Sandberg M., Eriksson L., Jonsson J., Sjostrom M., Wold S. New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids. J. Med. Chem. 41:1998;2481-2491.
-
(1998)
J. Med. Chem.
, vol.41
, pp. 2481-2491
-
-
Sandberg, M.1
Eriksson, L.2
Jonsson, J.3
Sjostrom, M.4
Wold, S.5
-
33
-
-
0035950043
-
Toward the quantitative prediction of T-cell epitopes, CoMFA and CoMSIA studies of peptides with affinity for the Class I MHC molecule HLA-A*0201
-
Doytchinova I.A., Flower D.R. Toward the quantitative prediction of T-cell epitopes, CoMFA and CoMSIA studies of peptides with affinity for the Class I MHC molecule HLA-A*0201. J. Med. Chem. 44:2001;3572-3581.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 3572-3581
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
34
-
-
0037102953
-
Physicochemical explanation of peptide binding to HLA-A*0201 major histocompatibility complex. A three-dimensional quantitative structure-activity relationship study
-
Doytchiniva I.A., Flower D.R. Physicochemical explanation of peptide binding to HLA-A*0201 major histocompatibility complex. A three-dimensional quantitative structure-activity relationship study. Proteins. 48:2002;505-518.
-
(2002)
Proteins
, vol.48
, pp. 505-518
-
-
Doytchiniva, I.A.1
Flower, D.R.2
-
35
-
-
0030747677
-
Degenerate cytotoxic T cell epitopes from P. falciparum restricted by multiple HLA-A and HLA-B supertype alleles
-
Doolan D.L., Hoffman S.L., Southwood S., Wentworth P.A., Sidney J., Chesnut R.W., Keogh E., Appella E., Nutman T.B., Lal A.A., Gordon D.M., Oloo A., Sette A. Degenerate cytotoxic T cell epitopes from P. falciparum restricted by multiple HLA-A and HLA-B supertype alleles. Immunity. 7:1997;97-112.
-
(1997)
Immunity
, vol.7
, pp. 97-112
-
-
Doolan, D.L.1
Hoffman, S.L.2
Southwood, S.3
Wentworth, P.A.4
Sidney, J.5
Chesnut, R.W.6
Keogh, E.7
Appella, E.8
Nutman, T.B.9
Lal, A.A.10
Gordon, D.M.11
Oloo, A.12
Sette, A.13
-
36
-
-
0030811688
-
Human histocompatibility leukocyte antigen-binding supermotifs predict broadly cross-reactive cytotoxic T lymphocyte responses in patients with acute hepatitis
-
Bertoni R., Sidney J., Fowler P., Chesnut R.W., Chisari F.V., Sette A. Human histocompatibility leukocyte antigen-binding supermotifs predict broadly cross-reactive cytotoxic T lymphocyte responses in patients with acute hepatitis. J. Clin. Invest. 100:1997;503-513.
-
(1997)
J. Clin. Invest.
, vol.100
, pp. 503-513
-
-
Bertoni, R.1
Sidney, J.2
Fowler, P.3
Chesnut, R.W.4
Chisari, F.V.5
Sette, A.6
-
37
-
-
0028842070
-
Several HLA alleles share overlapping peptide specificities
-
Sidney J., del Guercio M.F., Southwood S., Engelhard V.H., Appella E., Rammensee H.G., Falk K., Rotzschke O., Takiguchi M., Kubo R.T., et al. Several HLA alleles share overlapping peptide specificities. J. Immunol. 154:1995;247-259.
-
(1995)
J. Immunol.
, vol.154
, pp. 247-259
-
-
Sidney, J.1
Del Guercio, M.F.2
Southwood, S.3
Engelhard, V.H.4
Appella, E.5
Rammensee, H.G.6
Falk, K.7
Rotzschke, O.8
Takiguchi, M.9
Kubo, R.T.10
-
38
-
-
0030587791
-
Specificity and degeneracy in peptide binding to HLA-B7-like class I molecules
-
Sidney J., Southwood S., del Guercio M.F., Grey H.M., Chesnut R.W., Kubo R.T., Sette A. Specificity and degeneracy in peptide binding to HLA-B7-like class I molecules. J. Immunol. 157:1996;3480-3490.
-
(1996)
J. Immunol.
, vol.157
, pp. 3480-3490
-
-
Sidney, J.1
Southwood, S.2
Del Guercio, M.F.3
Grey, H.M.4
Chesnut, R.W.5
Kubo, R.T.6
Sette, A.7
|