Analysing photosynthetic complexes in uncharacterized species or mixed microalgal communities using global antibodies

Physiologia Plantarum

Volumn 119, Issue 3, 2003, Pages 322-327

  Campbell, Douglas A ^a   Cockshutt, Amanda M ^a   Porankiewicz Asplund, Joanna ^b  

^a MOUNT ALLISON UNIVERSITY   (Canada)

^b Box 57 ^*  (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODIES; ENVIRONMENTAL IMPACT; METABOLISM; PHYSIOLOGY; PROTEINS;

PHOTOSYNTHETIC COMPLEXES;

PHOTOSYNTHESIS;

ALGAE; EUKARYOTA;

EID: 0242340653     PISSN: 00319317     EISSN: None     Source Type: Journal    
DOI: 10.1034/j.1399-3054.2003.00175.x     Document Type: Article

References (40)

1. Altschul SF, Bundschuh R, Olsen R, Hwa T (2001) The estimation of statistical parameters for local alignment score distributions. Nucl Acids Res 29: 351-361
2. Aro EM, Virgin I, Andersson B (1993) Photoinhibition of photosystem-2. Inactivation, protein damage and turnover. Biochim Biophys Act 1143: 113-134
3. 2 concentrating mechanisms in cyanobacteria. Funct Plant Biol 29: 161-173
4. Bhaya DV, Schwarz R, Grossman AR (2000) Molecular responses to environmental stress. In: Whitton BA, Potts M (eds) The Ecology of Cyanobacteria. Kluwer Academic, Dordrecht, pp. 397-422
5. Bouchard JN, Roy S, Campbell D, Ferreya GA (2002) Effects of UVB Radiation of Phytoplankton: the Role of D1 Protein. American Society of Photobiology, Quebec, Canada
6. Burns RG, Dick RP (eds) (2002) Enzymes in the Environment. Marcel Dekker, New York
7. Campbell DA (2002) Peptide sequence tags and method of using same. Patent submission PCT 60/312042. Canada, USA
8. Corpet F (1988) Multiple sequence alignment with hierarchical clustering. Nucl Acids Res 16: 10881-10890, http://www. multalin.fr
9. Douglas SE (1994) Chloroplast origins and evolution. In: Bryant D (ed) The Molecular Biology of Cyanobacteria. Kluwer Academic, Dordrecht, The Netherlands, pp. 91-118
10. Falkowski PG, Raven JA (1997) Aquatic Photosynthesis. Blackwell Science, Oxford, pp. 33-300
11. Frasch WD (1994) The F-type ATPase in cyanobacteria: pivotal point in the evolution of a universal enzyme. In: Bryant D (ed) The Molecular Biology of Cyanobacteria. Kluwer Academic, Dordrecht, The Netherlands, pp. 361-380
12. Fujita Y (1997) A study on the dynamic features of photosystem stoichiometry: Accomplishments and problems for future studies. Photosynth Res 53: 83-93
13. Fulda S, Huang F, Nilsson F, Hagemann M, Norling B (2000) Proteomics of Synechocystis sp strain PCC 6803 - Identification of periplasmic proteins in cells grown at low and high salt concentrations. Eur J Biochem 267: 5900-5907
14. Gantt E (1994) Supramolecular membrane organization. In: Bryant D (ed) The Molecular Biology of Cyanobacteria. Kluwer Academic, Dordrecht, The Netherlands, pp. 119-138
15. Golbeck JH (1994) Photosystem I in cyanobacteria. In: Bryant D (ed) The Molecular Biology of Cyanobacteria. Kluwer Academic, Dordrecht, The Netherlands, pp. 319-360
16. Gygi SP, Rochon Y, Franza BR, Aebersold R (1999) Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19: 1720-1730
17. 6f complex. In: Bryant D (ed) The Molecular Biology of Cyanobacteria. Kluwer Academic, Dordrecht, The Netherlands, pp. 259-317
18. LaRoche J, Boyd PW, McKay RML, Geider RJ (1996) Flavodoxin as an in situ marker for iron stress in phytoplankton. Nature 382: 802-805
19. LaRoche J, Murray H, Orellana M, Newton J (1995) Flavodoxin expression as an indicator of iron limiation in marine diatoms. J Phycol 31: 520-530
20. Lesk AM (2002) Introduction to Bioinformatics. Oxford University Press, Oxford, UK, pp. 160-206
21. Lin SJ, Henze S, Lundgren P, Bergman B, Carpenter EJ (1998) Whole-cell immunolocalization of nitrogenase in marine diazotrophic cyanobacteria, Trichodesmium spp. App Env Micro 64: 3052-3058
22. 2 assimilation transcripts and proteins to moderate UVB: light acclimation potentiates resistance to UVB. Photochem Photobiol 77: 405-412
23. MacKenzie TDB, MacDonald TM, Dubois LA, Campbell DA (2001) Seasonal changes in temperature and light drive acclimation of photosynthetic physiology and macromolecular content in Lobaria pulmonaria. Planta 214: 57-66
24. Morse D, Salois P, Markovic P, Hastings JW (1995) A nuclear encoded form II RUBISCO in dinoflagellates. Science 268: 1622-1626
25. Orellana MV, Perry MJ (1992) An immunoprobe to measure RUBISCO concentrations and maximal photosynthetic rates of individual phytoplankton cells. Limnol Oceanogr 37: 478-490
26. Orellana MV, Perry MJ (1995) Optimization of an immunofluorescent assay of the internal enzyme ribulose-1,5-bisphosphate carboxylase (RUBISCO) in single phytoplankton cells. J Phycol 31: 785-794
27. Ottander C, Campbell D, Öquist G (1995) Seasonal changes in photosystem II organisation and pigment composition of Pinus sylvestris. Planta 197: 176-183
28. Paerl HP (1997) Primary productivity and producers. In: Hurst CJ (ed) Manual of Environmental Microbiology. ASM Press, Washington, DC, USA, pp. 252-262
29. Pichard SL, Campbell L, Carder K, Kang JB, Patch J, Tabita FR, Paul JH (1997) Analysis of ribulose bisphosphate carboxylase gene expression in natural phytoplankton communities by group-specific gene probing. Mar Ecol Prog Series 149: 239-253
30. Scanlan DJ, Silman NJ, Donald KM, Wilson WH, Carr NG, Joint I, Mann NH (1997) An immunological approach to detect phosphate stress in populations and single cells of photosynthetic picoplankton. App Env Micro 63: 2411-2420
31. Schade R, Behn I, Erhard M, Hlinak A, Staak C (2000) Chicken Egg Yolk Antibodies, Production and Application. Springer-Verlag, Berlin; Germany
32. Schaffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF (2001) Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucl Acid Res 29: 2994-3005
33. Schofield SC, Campbell DA, Funk C, MacKenzie TDB (2003) Changes in macromolecular allocation in non-dividing algal symbionts allow for photosynthetic acclimation in the lichen Lobaria pulmonaria. New Phytol XX: 00-00 in press
34. Simpson RJ, Dorow DS (2001) Cancer proteomics: from signaling networks to tumor markers. Trends Biotechnol 19: s40-s48
35. Staley JT (2002) A microbiological perspective of biodiversity. In: Staley JT, Reysenbach A-L (eds) Biodiversity of Microbial Life. Wiley-Liss, New York, USA, pp. 3-23
36. SwissProt (1994) http://www.expasy.ch; SwissProt database of annotated protein sequences.
37. Tabita RF (1994) The biochemistry and molecular regulation of carbon dioxide metabolism in cyanobacteria. In: Bryant D (ed) The Molecular Biology of Cyanobacteria. Kluwer Academic, Dordrecht, The Netherlands, pp. 437-467
38. Vrieling EG, Anderson DM (1996) Immunofluorescence in phytoplankton research: applications and potential. J Phycol 32: 1-16
39. Whitney SM, Shaw DC, Yellowlees D (1995) Evidence that the dinoflagellate ribulose-1,5-bisphosphate carboxylase oxygenase is related to the form II large subunit of the photosynthetic purple non-sulfur bacteria. Proc Natl Acad Sci 259: 271-275
40. Wilmotte A, Demonceau C, Goffart A, Hecq JH, Demoulin V, Crossley AC (2002) Molecular and pigment studies of the picophytoplankton in a region of the Southern Ocean (42-54 degrees S, 141-144 degrees E) in March 1998. Deep Sea Res II - Top Stud Oceanogr 49: 3351-3363