The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 22, 2003, Pages 12798-12803

  Terai, Yohey ^a   Morikawa, Naoko ^a   Kawakami, Koichi ^b   Okada, Norihiro ^a,c  

^a Tokyo Institute of Technology ^*  (Japan)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

^c NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

ADAPTIVE RADIATION; AFRICA; ALTERNATIVE RNA SPLICING; ARTICLE; CICHLID; COLOR; EPIDERMIS; GENE EXPRESSION; GENE FUNCTION; GENE LOCATION; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC VARIABILITY; LAKE; LINKAGE ANALYSIS; MATE CHOICE; MOLECULAR CLONING; MOLECULAR EVOLUTION; MYOTOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PIGMENT CELL; PRIORITY JOURNAL; REGULATORY MECHANISM; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ISOLATION; RNA STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SKIN PIGMENTATION; SPECIES DIFFERENCE; SPECIES DIFFERENTIATION; ZEBRA FISH;

AFRICA, EASTERN; ALTERNATIVE SPLICING; ANIMALS; BASE SEQUENCE; CICHLIDS; DNA PRIMERS; EVOLUTION; FISH PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; IN SITU HYBRIDIZATION; INTRONS; RESTRICTION MAPPING; RNA, MESSENGER; SKIN PHYSIOLOGY;

CICHLIDAE; DANIO RERIO; PISCES;

EID: 0242300100     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.2132833100     Document Type: Article

References (48)

1. Fryer, G. & Iles, T. D. (1972) The Cichlid Fishes of the Great Lakes of Africa: Their Biology and Evolution (Oliver and Boyd, Edinburgh).
2. Greenwood, P. H. (1991) in Cichlid Fishes: Behaviour, Ecology and Evolution, ed. Keenleyside, M. H. A. (Chapman & Hall, London), pp. 86-102.
3. Snoeks, J., Ruber, L. & Verheyen, E. (1994)Arch. Hydrobiol. Beiheft. Ergebnisse Limnol. 44, 355-372.
4. Konings, A. (1995) Malawi Cichlids in Their Natural Habitat (Cichlid Press, St. Leon-Rot, Germany), 2nd Ed.
5. Seehausen, O. (1996) Lake Victoria Rock Cichlids: Taxonomy Ecology, and Distribution (Verduijn Cichlids, Zevenhuizen, The Netherlands).
6. Johnson, T. C., Scholz, C. A., Talbot, M. R., Kelts, K., Ricketts, R. D., Ngobi, G., Beuning, K., Ssemmanda, I. & Mcgill, J. W. (1996) Science 273, 1091-1093.
7. Mayer, A., Kocher, T. D., Basasibwaki, P. & Wilson, A. C. (1990) Nature 347, 550-553.
8. Seehausen, O., van Alphen, J. J. M. & Witte, F. (1997) Science 277, 1808-1811.
9. Seehausen, O. & van Alphen, J. J. M. (1998) Behav. Ecol. Sociobiol. 42, 1-8.
10. Crapon de Caprona, M. D. (1996) Ann. Mus. R. Afr. Cent. Sci. Zool. 251, 117-120.
11. Leff, F. E., Rosenfeld, M. G. & Evans, R. M. (1986) Annu. Rev. Biochem. 55, 1091-1118.
12. Breibart, R. E., Andreadis, A. & Nadal-Ginard, B. (1987) Annu. Rev. Biochem. 56, 467-495.
13. Johnson, S. L., Africa, D., Walker, C. & Weston, J. A. (1995) Dev. Biol. 167, 27-33.
14. Haffter, P., Odenthal, J., Mullins, M. C., Lin, S., Farrell, M. J., Vogelsang, E., Haas, F., Brand, M., van Eeden, F. J. M., Furutani-Seiki, M., et al. (1996) Dev. Genes Evol. 206, 260-276.
15. Parichy, D. M., Rawls, J. F., Pratt, S. J., Whitfield, T. T. & Johnson, S. L. (1999) Development (Cambridge, U.K.) 126, 3425-3436.
16. Lister, J. A., Robertson, C. P., Lepage, T., Johnson, S. L. & Raible, D. W. (1999) Development (Cambridge, U.K.) 126, 3757-3767.
17. Kawakami, K., Amsterdam, A., Shimoda, N., Becker, T., Mugg, J., Shima, A. & Hopkins, N. (2000) Curr. Biol. 10, 463-466.
18. Terai, Y., Morikawa, N., Kawakami, K. & Okada, N. (2001) Mol. Biol. Evol. 19, 574-578.
19. Poss, K. D., Shen, J., Nechiporuk, A., McMahon, G., Thisse, B., Thisse, C. & Keating, M. T. (2000) Dev. Biol. 222, 347-358.
20. Graveley, B. R. (2001) Trends Genet. 17, 100-107.
21. Feldman, R. M., Correll, C. C., Kaplan, K. B. & Deshaies, R. J. (1997) Cell 91, 221-230.
22. Kominami, K. & Toda., T. (1997) Genes Dev. 11, 1548-1560.
23. Natorff, R., Piotrowska, M. & Paszewski, A. (1998) Mol. Gen. Genet. 257, 255-263.
24. Jiang, J. & Struhl, G. (1998) Nature 391, 493-496.
25. Schmucker, D., Clemens, J. C., Shu, H., Worby, C. A., Xiao, J., Muda, M., Dixon, J. E. & Zipursky, S. L. (2000) Cell 101, 671-684.
26. Black, D. L. (1998) Neuron 20, 165-168.
27. Ullrich, B. Ushkaryov, Y. A. & Sudhof, T. C. (1995) Neuron 14, 497-507.
28. Unsworth, B. R., Hayman, G. T., Carroll, A. & Lelkes, P. I. (1999) Int. J. Dev. Neurosci. 17, 45-55.
29. Nishida, M. (1991) Experientia 47, 974-979.
30. Turner, G. F. (1999) in The Evolution of Biological Diversity, eds. Magurran, A. E. & May, R. M. (Oxford Univ. Press, Oxford), pp. 217-229.
31. Seehausen, O. (2000) Adv. Ecol. Res. 31, 237-274.
32. Seehausen, O. (2002) Proc. R. Soc. London Ser. B 269, 491-497.
33. Seehausen, O., Koetsier, E., Schneider, M. V., Chapman, L. J., Chapman, C. A., Knight, M. E., Turner, G. F., van Alphen, J. J. M. & Bills, R. (2003) Proc. R. Soc. London Ser. B 270, 129-137.
34. Nissim-Rafinia, M. & Kerem, B. (2002) Trends Genet. 18, 123-127.
35. Inoue, K., Hoshijima, K., Sakamoto, H. & Shimura, Y. (1990) Nature 344, 461-463.
36. Hoshijima, K., Inoue, K., Higuchi, I., Sakamoto, H. & Shimura, Y. (1991) Science 252, 833-836.
37. Inoue, K., Hoshijima, K., Higuchi, I., Sakamoto, H. & Shimura, Y. (1992) Proc. Natl. Acad. Sci. USA 89, 8092-8096.
38. Houdebine, L. M. & Chourrout, D. (1991) Experientia 15, 891-897.
39. Ting, C. T., Tsaur, S. C., Wu, M. L. & Wu., C. I. (1998) Science 282, 1501-1504.
40. Terai, Y., Mayer, W. E., Klein, J., Tichy H. & Okada, N. (2002) Proc. Natl. Acad. Sci. USA 99, 15501-15506.
41. Kocher, T. D., Conroy, J. A., McKaye, K. R. & Stauffer, J. R. (1993) Mol. Phylogenet. Evol. 2, 158-165.
42. Sturmbauer, C. & Meyer, A. (1993) Mol. Biol. Evol. 10, 751-768.
43. Meyer, A. (1993) Trends Ecol. Evol. 8, 279-284.
44. Mayer, W. E., Tichy, H. & Klein, J. (1998) Heredity 80, 702-714.
45. Takahashi, K., Terai, Y., Nishida, M. & Okada, N. (2001) Mol. Biol. Evol. 18, 2057-2066.
46. Salzburger, W., Meyer, A., Baric, S., Verheyen E. & Sturmbauer, C. (2002) Syst. Biol. 51, 113-135.
47. Terai, Y., Takahashi, K., Nishida, M., Sato, T. & Okada, N. (2003) Mol. Biol. Evol. 6, 924-930.
48. Baric, S., Salzburger, W. & Sturmbauer, C. (2003) J. Mol. Evol. 56, 54-68.