Hypovirulence-Associated Double-Stranded RNA from Sclerotinia homoeocarpa Is Conspecific with Ophiostoma novo-ulmi Mitovirus 3a-Ld

Phytopathology

Volumn 93, Issue 11, 2003, Pages 1407-1414

  Deng, F ^a   Xu, R ^a   Boland, G J ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DSRNA VIRUSES; FUNGI; MITOVIRUS; MYXOGASTRIA; OPHIOSTOMA NOVO; OPHIOSTOMA NOVO-ULMI; SCLEROTINIA HOMOEOCARPA; STAPHYLOCOCCUS PHAGE 3A; ULMUS;

EID: 0242276345     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO.2003.93.11.1407     Document Type: Article

References (50)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 5:403-410.
2. Anagnostakis, S. L. 1982. Biological control of chestnut blight. Science 215:466-471.
3. Baltimore, D. 1966. Purification and properties of poliovirus double-stranded RNA. J. Mol. Biol. 18:421-428.
4. Brasier, C. M., Kirk, S. A., Pipe, N. D., and Buck, K. W. 1998. Rare interspecific hybrids in natural populations of the Dutch elm disease pathogens Ophiostoma ulmi and O. novo-ulmi. Mycol. Res. 102: 45-57.
5. Bruenn, J. A. 1991. Relationships among the positive strand and double-strand RNA viruses as viewed through their RNA-dependent RNA polymerases. Nucleic Acids Res. 19:217-226.
6. Bruenn, J. A. 1993. A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses. Nucleic Acids Res. 21:5667-5669.
7. Buck, K. W. 1996. Comparison of the replication of positive-stranded RNA viruses of plants and animals. Adv. Virus Res. 47:159-251.
8. Buck, K. W. 1998. Molecular variability of viruses of fungi. Pages 53-72 in: Molecular Variability of Fungal Pathogens. P. D. Bridge, Y. Couteaudier, and J. M. Clarkson, eds. CAB International, Wallingford, UK.
9. Chen, B., Chen, C. H., Bowman, B. H., and Nuss, D. L. 1996. Phenotypic changes associated with wild-type and mutant hypovirus RNA transfection of plant pathogenic fungi phylogenetically related to Cryphonectria parasitica. Phytopathology 86:301-310.
10. Chen, B., and Nuss, D. L. 1999. Infectious cDNA clone of hypovirus CHV1-Euro7: A comparative virology approach to investigate virus-mediated hypovirulence of the chestnut blight fungus Cryphonectria parasitica. J. Virol. 73:985-992.
11. Cole, T. E., Müller, B., Hong, Y., Brasier, C. M., and Buck, K. W. 1998. Complexity of virus-like double-stranded RNA elements in a diseased isolate of the Dutch elm disease fungus, Ophiostoma novo-ulmi. J. Phytopathol. 146:593-598.
12. Craven, M. G., Pawlyk, D. M., Choi, G. H., and Nuss, D. L. 1993. Papam-like protease p29 as symptom determinant encoded by a hypovirulence- associated virus of the chestnut blight fungus. J. Virol. 67:6513-6521.
13. Cummings, D. J., McNally, K. L. Domenico, J. M., and Matsuura, E. T. 1990. The complete DNA sequence of the mitochondrial genome of Podospora anserina. Curr. Genet. 17:375-402.
14. Diaz-Ruiz, J. R., and Kaper, J. M. 1978. Isolation of viral double-stranded RNA using a LiCl fractionation procedure. Prep. Biochem. 8:1-13.
15. Eigen, M., and Biebriecher, C. 1988. Sequence space and quasispecies distribution. Pages 211-245 in: RNA Genetics. E. Domingo, J. J. Holland, and P. Ahlquist, eds. CRC Press, Boca Raton, FL.
16. Finckh, U., Lingenfelter, P. A., and Myerson, D. 1991. Producing single-stranded DNA probes with the Taq DNA polymerase: A high yield protocol. BioTechniques 10:35-38.
17. Frohman, M. A., Dush, M. K., and Martin, G. R. 1988. Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acatl. Sci. USA 85:8998-9002.
18. Habili, N., and Symons, R. H. 1989. Evolutionary relationship between luteoviruses and other RNA plant viruses based on sequence motifs in their putative RNA polymerases and nucleic acid helicases. Nucleic Acids Res. 17:9543-9555.
19. Hillman, B. I., Fulbright, D. W., Nuss, D. L., and Van Alfen, N. K. 2000. Family Hypoviridae. Pages 515-520 in: Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses. M. H. V. Van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle, and R. B. Wichner, eds. Academic Press, San Diego, CA.
20. Hillman, B. I., Halpern, B. T., and Brown, M. P. 1994. A viral dsRNA element of the chestnut blight fungus with a distinct genetic organization. Virology 201:241-250.
21. Hong, Y., Cole, T. E., Brasier, C. M., and Buck, K. W. 1998. Evolutionary relationships among putative RNA-dependent RNA polymerases encoded by a mitochondrial virus-like RNA in the Dutch elm disease fungus. Ophiostoma novo-ulmi, by other viruses and virus-like RNAs and by the Arabidopsis mitochondrial genome. Virology 246:158-169.
22. Hong, Y., Dover, S. L., Cole, T. E., Brasier, C. M., and Buck, K. W. 1999 Multiple mitochondrial viruses in an isolate of the Dutch elm disease fungus Ophiostoma novo-ulmi. Virology 258:118-127.
23. Kellner, M., Burmester, A., Wöstemeyer, A., and Wöstemeyer, J. 1993. Transfer of genetic information from the mycoparasite Parasitella parasitice to its host Absidia glauca. Curr. Genet. 23:334-337.
24. Kempken, F. 1995. Horizontal transfer of a mitochondrial plasmid. Mol. Gen. Genet. 248:89-94.
25. Kohn, L. M. 1979. A monographic revision of the genus Sclerotinia. Mycotaxon 9:365-444.
26. Koonin, E. V. 1991. The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J. Gen. Virol. 72:2197-2206.
27. Lakshman, D. K., Jian, J., and Tavantzis, S. M. 1998. A double-stranded RNA element from a hypovirulent strain of Rhizoctonia solani occurs in DNA form and is genetically related to the pentafunctional AROM protein of the shikimate pathway. Proc. Natl. Acad. Sci. USA 95:6425-6429.
28. Mathews, D. H., Sabina, J., Zuker, M., and Turner, D. H. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288:911-940.
29. Melzer, M. S., Ikeda, S. S., and Boland, G. J. 2002. Interspecific transmission of double-stranded RNA and hypovirulence from Sclerotinia sclerotiorum to S. minor. Phytopathology 92:780-784.
30. Nuss, D. L. 1992. Biological control of chestnut blight: An example of virus mediated attenuation of fungal pathogenesis. Microbiol. Rev. 56:561-576.
31. Nuss, D. L. 1996. Using hypoviruses to probe and perturb signal transduction processes underlying fungal pathogenesis. Plant Cell 8:1845-1853.
32. Nuss, D. L., and Koltin, Y. 1990. Significance of dsRNA genetic elements in plant pathogenic fungi. Annu. Rev. Phytopathol. 28:37-58.
33. Paquin, B., Laforest, M. J., Forget, L., Roewer, I., Wang, Z., Longcore, J., and Lang, B. F. 1997. The fungal mitochondrial genome project: Evolution of fungal mitochondrial genomes and their gene expression. Curr. Genet. 31:380-395.
34. Poch, O., Sauvaget, I., Delarue, M., and Tordo, N. 1989. Identification of four conserved motifs among the RNA-dependent RNA polymerase encoding elements. EMBO J. 8:3867-3874.
35. Polashock, J. J., and Hillman, B. I. 1994. A small mitochondrial double-stranded (ds) RNA element associated with hypovirulent strain of the chestnut blight fungus and ancestrally related to yeast cytoplasmic T and W RNAs. Proc. Natl. Acad. Sci. USA 91:8680-8684.
36. Powell, J. F., and Vargas, J. M., Jr. 1997. Mycelial compatibility and systematics of Sclerotinia homoeocarpa. (Abstr.) Phytopathology 87(suppl.):S79.
37. Sanger, F., Nicklen, S., and Coulson, A. R. 1977. DNA sequencing with chain-termination inhibitors. Proc. Natl. Acad. Sci. USA 74:6463-5467.
38. Sasaki, A., Onoue, M., Kanematsu, S., Suzaki, K., Miyanishi, M., Suzuki, N., Nuss, D. L., and Yoshida, K. 2002. Extending chestnut blight hypovirus host range within Diaporthales by biolistic delivery of viral cDNA. Mol. Plant-Microbe Interact. 15:780-789.
39. Shukla, D., Ward, C. W., and Brunt, A. A. 1994. The Potyviridae. CBA International, Wallingford, UK.
40. Smart, C. D., Yuan, W., Foglia, R., Nuss, D. L., Fulbright, D. L., and Hillman, B. I. 2000. Cryphomectria hypovirus 3, a virus species in the family Hypoviridae with a single open reading frame. Virology 265:66-73.
41. Suzuki, N., and Nuss, D. L. 2002. Contribution of protein p40 to hypovirus-mediated modulation of fungal host phenotype and viral RNA accumulation. J. Virol. 76:7747-7759.
42. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. Clustal W. Improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4697-4680.
43. Unseld, M., Marienfeld, J. R., Brandt, P., and Brennieke, A. 1997. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat. Genet. 15:57-61.
44. Van Regenmortel, M. H. V. 1990. Virus species, a much overlooked but essential concept in virus classification. Intervirology 31:241-254.
45. Van Regenmortel, M. H. V. 2000. Introduction to the species concept in virus taxonomy. Pages 3-16 in: Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses. M. H. V. Van Regenmortel, C. M. Fauquet, D. H. I., Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle, and R. B. Wickner, eds. Academic Press, San Diego, CA.
46. Walsh, B., Ikeda, S. S., and Boland, G. J. 1999. Biology and management of dollar spot (Sclerotinia homococarpa): an important disease of turfgrass. HortScience 34:13-21.
47. Ward, C. W., McKern, N. M., Frenkel, J. J., and Shukla, D. D. 1992. Sequence data as the major criterion for potyvirus classification. Pages 283-297 in: Potyvirus Taxonomy. O. W. Barnett, ed. Springer-Verlag, New York.
48. Wickner, R. B., Esteban, R., and Hillman, B. I. 2000. Family Narnaviridae. Pages 651-656 in: Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses. M. H. V. Van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle, and R. B. Wickner, eds. Academic Press, San Diego, CA.
49. Zhou, T., and Boland, G. J. 1997. Hypovirulence and double-stranded RNA in Sclerotinia homoeocarpa. Phytopathology 87:147-153.
50. Zhou, T., and Boland, G. J. 1998. Suppression of dollar spot by hypovirulent isolates of Sclerotinia homoeocarpu. Phytopathology 88: 788-794.