Dynamics of Protamine 1 Binding to Single DNA Molecules

Journal of Biological Chemistry

Volumn 278, Issue 43, 2003, Pages 42403-42408

  Brewer, Laurence ^a   Corzett, Michele ^a   Lau, Edmond Y ^a   Balhorn, Rod ^a  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; CROSSLINKING; GENES; MOLECULES;

PROTAMINE;

DNA;

ARGININE; DNA; LYSINE; PHENYLALANINE; PROTAMINE; PROTAMINE P1; SYNTHETIC PEPTIDE; TYROSINE; UNCLASSIFIED DRUG;

ARTICLE; COMPLEX FORMATION; CROSS LINKING; DISULFIDE BOND; DYNAMICS; KINETICS; POLYMERIZATION; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN FUNCTION;

ANIMALS; ARGININE; BINDING SITES; CATTLE; DNA; DNA PACKAGING; KINETICS; MALE; MODELS, MOLECULAR; MOTION; PEPTIDE FRAGMENTS; PROTAMINES; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SPERMATOZOA; STRUCTURE-ACTIVITY RELATIONSHIP;

VERTEBRATA;

EID: 0142211213     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M303610200     Document Type: Article

References (49)

1. Balhorn, R., Cosman, M., Thornton, K., Krishnan, V. V., Corzett, M., Bench, G., Kramer, C., Lee, J., IV, Hud, N. V., Allen, M., Prieto, M., Meyer-Ilse, W., Brown, J. T., Kirz, J., Zhang, X., Bradbury, E. M., Maki, G., Braun, R. E., and Breed, W. (1999) in The Male Gamete: From Basic Knowledge to Clinical Applications (Gagnon, C., ed) pp. 55-70, Cache River Press, Vienna, IL
2. Allen, M. J., Bradbury, E. M., and Balhorn, R. (1997) Nucleic Acids Res. 25, 2221-2226
3. Hud, N. V., Allen, M. J., Downing, K. H., Lee, J., and Balhorn, R. (1993) Biochem. Biophys. Res. Commun. 193, 1347-1354
4. Ward, W. S., and Zalensky, A. O. (1996) Crit. Rev. Eukaryotic Gene Expr. 6, 139-147
5. Meistrich, M. L. (1989) in Histones and Other Basic Nuclear Proteins (Hnilica, L. S., Stein, G. S., and Stein, J. L., eds) pp. 165-182, CRC Press, Inc., Boca Raton, FL
6. Hecht, N. B. (1998) BioEssays 20, 555-561
7. Sassone-Corsi, P. (2002) Science 296, 2176-2178
8. Balhorn, R., Brewer, L., and Corzett, M. (2000) Mol. Reprod. Dev. 56, 230-234
9. Corzett, M., Mazrimas, J., and Balhorn, R. (2002) Mol. Reprod. Dev. 61, 519-527
10. Balhorn, R. (1989) in Molecular Biology of Chromosome Function (Adolph, K. W., ed) pp. 366-395, Springer-Verlag Inc., New York
11. Mazrimas, J. A., Corzett, M., Campos, C., and Balhorn, R. (1986) Biochim. Biophys. Acta 872, 11-15
12. Prieto, M. C., Maki, A. H., and Balhorn, R. (1997) Biochemistry 36, 11944-11951
13. Feughelman, M., Langridge, R., Seeds, W. E., Stokes, A. R., Wilson, H. R., Hooper, C. W., Wilkins, M. H. F., Barclay, R. K., and Hamilton, L. D. (1955) Nature 175, 834-838
14. Hud, N. V., Milanovich, F. P., and Balhorn, R. (1994) Biochemistry 33, 7528-7535
15. Pogany, G. C., Corzett, M., Weston, S., and Balhorn, R. (1981) Exp. Cell Res. 136, 127-136
16. Bench, G. S., Friz, A. M., Corzett, M. H., Morse, D. H., and Balhorn, R. (1996) Cytometry 23, 263-271
17. Louie, A. J., and Dixon, G. H. (1972) J. Biol. Chem. 247, 7962-7968
18. Chirat, F., Arkhis, A., Martinage, A., Jaquinod, M., Chevaillier, P., and Sautiere, P. (1993) Biochim. Biophys. Acta 1203, 109-114
19. Pirhonen, A., Linnala-Kankkunen, A., and Menpaa, P. H. (1994) Eur. J. Biochem. 223, 165-169
20. Balhorn, R., Corzett, M., Mazrimas, J., and Watkins, B. (1991) Biochemistry 30, 175-181
21. Brewer, L. R., Corzett, M., and Balhorn, R. (1999) Science 286, 120-123
22. Tobita, T., Tanimoto, T., and Nakano, M. (1988) Biochem. Int. 16, 163-173
23. Nakano, M., Kasai, K., Yoshida, K., Tanimoto, T., Tamaki, Y., and Tobita, T. (1989) J. Biochem. (Tokyo) 105, 133-137
24. Standke, K. C., and Brunnert, H. (1975) Nucleic Acids Res. 2, 1839-1849
25. Wehling, K., Arfmann, H. A., Standke, K. H., and Wagner, K. G. (1975) Nucleic Acids Res. 2, 799-807
26. Mascotti, D. P., and Lohman, T. M. (1997) Biochemistry 36, 7272-7279
27. Kawashima, S., and Ando, T. (1978) J. Biochem. (Tokyo) 84, 343-350
28. Olins, D. E., Olins, A. L., and Von Hippel, P. H. (1967) J. Mol. Biol. 24, 157-176
29. Zhang, X., Balhorn, R., Mazrimas, J., and Kirz, J. (1996) J. Struct. Biol. 116, 335-344
30. Brewer, L., Corzett, M., and Balhorn, R. (2002) J. Biol. Chem. 277, 38895-38900
31. Pearlman, D. A., Case, D. A., Caldwell, J. W., Ross, W. S., Cheatham, T. E., III, Debolt, S., Ferguson, D., Seibel, G., and Kollman, P. A. (1995) Comput. Phys. Commun. 91, 1-41
32. Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W., and Kollman, P. A. (1995) J. Am. Chem. Soc. 117, 5179-5197
33. Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L. (1983) J. Chem. Phys. 79, 926-935
34. Essmann, U., Perera, L., Berkowitz, M. L., Darden, T., Lee, H., and Pedersen, L. G. (1995) J. Chem. Phys. 103, 8577-8593
35. Ryckaert, J. P., Ciccotti, G., and Berendsen, H. J. C. (1977) J. Comput. Phys. 23, 327-341
36. Kelley, L. A., Gardner, S. P., and Sutcliffe, M. J. (1997) Protein Eng. 10, 737-741
37. Sridharan, S., Nicholls, A., and Honig, B. (1992) FASEB J. 6, A174
38. Balhorn, R., Corzett, M., and Mazrimas, J. A. (1992)Arch. Biochem. Biophys. 296, 384-393
39. Porschke, D. (1978) Eur. J. Biochem. 86, 291-299
40. Kawashima, S., Inoue, S., and Ando, T. (1969) Biochim. Biophys. Acta 186, 145-157
41. Brun, F., Toulme, J. J., and Helene, C. (1975) Biochemistry 14, 558-563
42. Sautiere, P., Belaiche, D., Martinage, A., and Loir, M. (1984) Eur. J. Biochem. 144, 121-125
43. Coleman, J. E., and Armitage, I. M. (1978) Biochemistry 17, 5038-5045
44. Buck, F., Hahn, K. D., Zemann, W., Ruterjans, H., Sadler, J. R., Beyreuther, K., Kaptein, R., Scheek, R., and Hull, W. E. (1983) Eur. J. Biochem. 132, 321-327
45. Huang, X., Shullenberger, D. F., and Long, E., C. (1994) Biochem. Biophys. Res. Commun. 198, 712-719
46. Wong, B., Masse, J. E., Yen, Y. M., Giannikopoulos, P., Feigon, J., Johnson, R. C., and Giannikoupolous, P. (2002) Biochemistry 41, 5404-5414
47. Worth, G. A., and Wade, R. C. (1995) J. Phys. Chem. 99, 17473-17482
48. Toth, G., Watts, C. R., Murphy, R. F., and Lovas, S. (2001) Proteins Struct. Funct. Genet. 43, 373-381
49. Corey, R. B., and Pauling, L. (1953) Rev. Sci. Instrum. 24, 621-627