Structure and evolutionary aspects of matrix metalloproteinases: A brief overview

Molecular and Cellular Biochemistry

Volumn 253, Issue 1-2, 2003, Pages 31-40

  Das, Sudip ^a   Mandal, Malay ^a   Chakraborti, Tapati ^a   Mandal, Amritlal ^a   Chakraborti, Sajal ^a  

^a UNIVERSITY OF KALYANI   (India)

Author keywords

Catalytic domain; Dendrogram; Divergence; Evolution; Hemopexin vitronectin domain; Matrix metalloproteinases; Propeptide domain

Indexed keywords

CALCIUM ION; HEMOPEXIN; MATRILYSIN; MATRIX METALLOPROTEINASE; MEMBRANE ENZYME; PROTEINASE; TISSUE INHIBITOR OF METALLOPROTEINASE; ZINC ION;

AMINO ACID SEQUENCE; BINDING SITE; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME BINDING; EVOLUTIONARY HOMOLOGY; EXTRACELLULAR MATRIX; GENE SEQUENCE; GENE STRUCTURE; GENETIC CODE; MOLECULAR INTERACTION; PROTEIN ASSEMBLY; PROTEIN DEGRADATION; PROTEIN FUNCTION; REVIEW; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; CATALYTIC DOMAIN; EVOLUTION, MOLECULAR; EXTRACELLULAR MATRIX; HUMANS; MATRIX METALLOPROTEINASES; MOLECULAR SEQUENCE DATA; PROTEIN SORTING SIGNALS; PROTEIN STRUCTURE, TERTIARY; TISSUE INHIBITOR OF METALLOPROTEINASES;

INVERTEBRATA; VERTEBRATA;

EID: 0142181290     PISSN: 03008177     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1026093016148     Document Type: Review

References (70)

1. Lijen HR: Matrix metalloproteinase and cellular fibrinolytic activity. Biochemistry (Moscow) 67: 92-98, 2002
2. Armstrong DG, Jude EB: The role of matrix metalloproteinases in wound healing. J Am Podiatr Med Assoc 92: 12-18, 2002
3. Birkedal-Hansen H, Moore WGI, Bodden MK, Windsor LJ, Birkedal-Hansen B, DeCarlo A, Englar JA: Matrix Metalloproteinases: A review. Crit Rev Oral Biol Med 4: 197-250, 1993
4. Ravanti L, Kahari, V-M: Matrix metalloproteinases in wound repair. Int J Mol Med 6: 391-407, 2000
5. Sterlicht MD, Werb Z: How matrix metalloproteinases regulate cell behaviour. Ann Rev Cell Dev Biol 17: 463-516, 2001
6. Brew K, Dinakarpandian D, Nagase H: Tissue inhibitors of metalloproteinases: Evolution, structure and function. Biochim Biophys Acta 1477: 267-283, 2000
7. Stocker W, Grams F, Baumann U, Reinemer P, Gomis-Ruth FX: The metzincins-topological and sequential relations between the astacins, adamalysins, serralysins, and matrixins (collageanases) define a super-family of zinc peptidases. Prot Sci 4: 823-840, 1995
8. Lepaget T, Gache C: Early expression of a collagenase like hatching enzyme gene in the sea urchin embryo. EMBO J 9: 3003-3012, 1990
9. Llano E, Pendas AM, Aza-Blanc P, Kornberg TB, Lopez-Otin C: DM1-MMP, a matrix metalloproteinase from Drosophila with a potential role in extracellular matrix remodeling during neural development. J Biol Chem 275: 35978-35985, 2000
10. Leontovich AA, Zhang J, Shimokawa K, Nagase H, Sarras MP Jr: A novel hydra matrix metalloproteinase (HMMP) functions in extracellular matrix degradation, morphogenesis and the maintenance of differentiated cells in the foot process. Development 127: 907-920, 2000
11. McGeehan G, Burkhart W, Anderegg R, Becherer JD, Gillikin JW, Graham JS: Sequencing and characterization of the soybean leaf metalloproteinase: Structural and functional similarity to the matrix metalloproteinase family. Plant Physiol 99: 1179-1183, 1992
12. Maidment JM, Moore D, Murphy GP, Murphy G, Clark IM: Matrix metalloproteinase homologues from Arabidopsis thaliana. Expression and activity. J Biol Chem 274: 34706-34710, 1999
13. Kinoshita T, Fukuzawa H, Shimada T, Saito T, Matsuda Y: Primary structure and expression of a gamet lytic enzyme in clamydomonas Reinhardtii: Similarity of functiona domains to matrix metalloproteinases. Proc Natl Acad Sci USA 89: 4693-4697, 1992
14. Sato H, Kinoshita T, Takino T, Nakayama K, Seiki M: Activation of a recombinant membrane type 1-matrix metalloproteinase (MT1-MMP) by furin and its interaction with tissue inhibitor of metalloproteinases (TIMP-2). FEBS Lett 393: 101-104, 1996
15. Piente XS, Pendas AM, Llano E, Velasco G, Lopez-Otin C: Molecular cloning of a novel membrane-type matrix metalloproteinase from a human breast carcinoma. Cancer Res 56: 944-949, 1996
16. Van Wart H, Birkedal-Hansen H: The cysteine switch: A principle of regulation of metalloproteinase activity with potential applicability to the entire matrix metalloproteinase gene family. Proc Natl Acad Sci USA 87: 5578-5582, 1990
17. Woessner JF Jr: The family of matrix metalloproteases. Ann NY Acad Sci 732: 11-21, 1994
18. Bode W, Reinemer P, Huber R, Kleine T, Schnierer S, Tschesche H: The X-ray crystal structure of the catalytic domain of human neutrophil collagenase inhibited by a substrate analogue reveals the essentials for catalysis and specificity. EMBO J 13: 1263-1269, 1994
19. Salowe SP, Marcy AI, Cuca GC, Smith CK, Kopka IE, Hagman WK, Hermes JD: Characterization of zinc-binding sites in human stromelysin-1: Stoichiometry of the catalytic domain and identification of a cysteine ligand in the proenzyme. Biochemistry 31: 4535-4540, 1992
20. Massova I, Kotra LP, Fridman R, Mobashery S: Matrix metalloproteinases: Structures, evolution, and diversification. FASEB J 12: 1075-1095, 1998
21. Netzel-Arnett S, Salari A, Goli UB, Van Wart HE: Evidence for a triple helix recognition site in the hemopexin-like domains of human fibroblast and neutrophil interstitial collagenases. Ann NY Acad Sci 732: 22-30, 1994
22. Fields GB, Netzel-Arnett SJ, Windsor LJ, Engler JA, Birkedal-Hansen H, Van Wart HE: Proteolytic activities of human fibroblast collagenase: Hydrolysis of a broad range of substrates at a single active site. Biochemistry 29: 6670-6676, 1990
23. Mallya SK, Mookhtiar KA, Gao Y, Brew K, Dioszegi M, Birkedal-Hansen H, Van Wart HE: Characterization of 58-kilodalton human neutrophil collagenase: Comparison with human fibroblast collagenase. Biochemistry 29: 10628-10634, 1990
24. Netzel-Arnett SJ, Mallya SK, Nagase H, Birkedal-Hansen H, Van Wart HE: Continuously recording fluorescent assays optimized for five human matrix metalloproteinases. Anal Biochem 195: 86-92, 1991
25. Docherty AJ, Murphy G: The tissue metalloproteinase family and the inhibitor TIMP: A study using cDNAs and recombinant proteins. Ann Rheum Dis 49: 469-479, 1990
26. Woessner JF Jr: Matrix metalloproteinase and their inhibitors in connective tissue remodeling. FASEB J 5: 2145-2154, 1991
27. Chen LC, Noelken ME, Nagase H: Disruption of the cysteine 75 and zinc ion coordination is not sufficient to activate the precursor of human matrix metalloproteinase 3 (stromelysin-1). Biochemistry 32: 10289-10295, 1993
28. Ward RV, Atkinson SJ, Slocombe PM, Docherty AJP, Reynolds JJ, Murphy G: Tissue inhibitor of metalloproteinases-2 inhibits the activation of 72 kDa progelatinase by fibroblast membranes. Biochem Biophys Acta 1079: 242-246, 1991
29. Brown PD, Kleiner DE, Unsworth EJ, Stetler-Stevenson WG: Cellular activation of a 72 kDa type IV procollagenase/TIMP-2 complex. Kidney Int 43: 163-170, 1993
30. Monsky WL, Kelly T, Lin C-Y, Yeh Y, Stetler-Stevenson WG, Mueller SC, Chen W-T: Binding and localization of Mr 72,000 matrix metalloproteinases at cell surface invadopodia. Cancer Res 53: 3159-3164, 1993
31. Bode W, Gomis-Ruth F-X, Stocker W: Astacins, serralysins, snake venom and matrix metalloproteinases exhibit identical zinc-binding environments (HEXXHXXGXXH and Met-turn) and topologies and should be grouped into a common family, the 'metzicins'. FEBS Lett 331: 134-140, 1993
32. Gooley PR, Jhonson BA, Marcy AI, Cuca GC, Salowe SP, Haumann WK, Esser CK, Springer JP: Secondary structure of zinc ligation of human recombinant short-form stromelysin by multidimensional heteronuclear NMR. Biochemistry 32: 13098-13108, 1993
33. Mark D, Sternlicht, Werb Z: How matrix metalloproteinases regulate cell behavior. Anna Rev Cell Dev Biol 17: 463-516, 2001
34. Bode W, Fernandez-Catalan C, Tschesche H, Grams F, Nagase H, Maskos K: Structural properties of matrix metalloproteinases. CMLS Cell Mol Life Sci 55: 639-652, 1999
35. Phillippe E, Van Der S, Ghishain O, Wormold MR, Dwek RA, Rudd PM: Matrix remodeling enzymes, the protease cascade and glycosylation. Biochem Biophys Acta 1528: 61-73, 2001
36. Galis ZS, Khatri JJ: Matrix metalloproteinases in vascular remodeling and atherosclerosis the good, the bad and the ugly. Cite Res 90: 251-262, 2002
37. Tomokazu Y, Sato H, Furukawa M: Recent advances in the regulation of matrix metalloproteinase 2 activation: From basic research to clinical implication. Oncol Rep 9: 607-611, 2002
38. Jenne D, Stanley KK: Nucleotide sequence and organization of the human S-protein gene: Repeating peptide motifs in the 'pexin' family and a model for their evolution. Biochemistry 26: 6735-6742, 1987
39. Knauper V, Osihues A, DeClerck YA, Langley KE, Blaser J, Tschesche H: Fragmentation of human polymorphonucler-leukocyte collagenase. Biochem J 291: 847-854, 1993
40. Murphy G, Alian JA, Willenbrock F, Cockett ME, O'Connell JP, Docherty AJP: The role of the C-terminal domain in collagenase and stromelysin specificity. J Biol Chem 267: 9612-9618, 1992
41. Sanchez-Lopez R, Alexander CM, behrendtsen O, Breathnach R, Werb Z: Role of zinc binding and hemopexin domain encoded sequences in the substrate specificity of collagenase and stromelysin-2 by chimeric proteins. J Biol Chem 268: 7238-7247, 1993
42. Fini ME, Plucinska IM, Mayer AS, Gross RH, Brinckerhoff CE: A gene for rabbit synovial cell collagenase: Member of a family of metalloproteinases that degrade the connective tissue matrix. Biochemistry 26: 6156-6165, 1987
43. Collier IE, Wilhelm SM, Eisen AZ, Marmer BL, Grant GA, Seltzer JL, Kronberger A, He C, Bauer EA, Goldberg GI: H-ras oncogene-transformed human bronchial epithelial cells (TBE-1) secrete a single metalloprotease capable of degrading basement membrane collagen. J Biol Chem 263: 6579-6587, 1988
44. Huhtala P, Chow LT, Tryggvason K: Structure of the human type IV collagenase gene. J Biol Chem 265: 11077-1082, 1990
45. Huhtala P, Tuuttila A, Chow LT, Lohi J, Keski-Oja J, Tryggvason K: Complete structure of the human gene for 92-kDa type IV collagenase. Divergent regulation of expression for the 92- and 72-kilodalton enzyme genes in HT-1080 cells. J Biol Chem 266: 16485-16490, 1991
46. Lohi J, Wilson CL, Roby JD, Parks WC: Epilysin: A novel human matrix metalloproteinase (MMP-28) expressed in testis and keratinocytes and in response to injury. J Biol Chem 276: 10134-10144, 2001
47. Nagase H, Woessner JF Jr: Matrix metalloproteinases. J Biol Chem 274: 21491-21494, 1999
48. Sternlicht MD, Bergers G: Matrix metalloproteinases as emerging targets in anti-cancer therapy: status and prospectus. Emerging Ther Targets 4: 609-633, 2000
49. Lovejoy B, Cleasby A, Hassel AM, Longley K, Luther MA, Weigl D, McGeehan G, McElroy AB, Drewry D, Lambert MH, Jordan SR: Structure of the catalytic domain of fibroblast collagenase complexed with an inhibitor. Science 263: 375-377, 1994
50. 1' specificity pocket. Nature Struc Biol 1: 119-123, 1994
51. Gooley PR, O'Connell F, Marcy AI, Cuca GC, Salowe SP, Bush BL, Hermes JD, Esser CK, Hagman WK, Springer JP, Johnson BA: The NMR structure of the inhibited catalytic domain of human stromelysin-1. Nature Struc Biol 1: 111-118, 1994
52. Browner MF, Smith WW Castelhano AL: Matrilysin-inhibitor complexes: Common themes among metalloproteases. Biochemistry 34: 6602-6610, 1995
53. Borden P, Heller RA: Transcriptional control of matrix metalloproteinases and the tissue inhibitor of matrix metalloproteinases. Crit Rev Eukaryot Gen Expression 7: 159-178, 1997
54. Gaire M, Magbanua Z, McDonnell S, McNeil L, Lovett DH, Matrisian LM: Structure and expression of the human gene for the matrix metalloproteinase matrilysin. J Biol Chem 269: 2032-2040, 1994
55. Rawlings ND, Barrett AJ: Families of serine peptidases. Meth Enzymol. 244: 19-61, 1994
56. Rawlings ND, Barrett AJ: Evolutionary families of metallopeptidases. Meth Enzymol 248: 183-228, 1995
57. Murphy GJ, Murphy G, Reynolds JJ: The origin of matrix metalloproteinases and their familial relationships. FEBS Lett 289: 4-7, 1991
58. DeSouza SJ, Brentani R: Sequence homology between abacterial and eukaryotic matrix metalloproteinases. J Mol Evol 36: 596-598, 1993
59. Franco AA, Mundy LM, Trucksis M, Wu S, Kaper JB, Sears CL: Cloning and characterization of the Bacteroids fragilis metalloprotease toxin gene. Infect Immunol 65: 1007-1013, 1997
60. Yang M, Murray MT, Kurkinen M: A novel metalloproteinase gene (XMMP) encoding vitronectin-like motifs is transiently expressed in Xenopus laevis early embryo development. J Biol Chem 272: 13527-13533, 1997
61. Pei D, Weiss SJ: Furin-dependent intracellular activation of human stromelysin-3 zymogen. Nature (Lond) 375: 244-247, 1995
62. Gururajan R, Grenet J, Lahti JM, Kidd VJ: Isolation and characterization of two novel metalloproteinase genes linked to the CdC2L locus on human chromosome 1p36.3. Genomics 52: 101-106, 1998
63. Park HI, Ni J, Gerkema FE, Liu D, Belozerov VE, Sang QX: Identification and characterization of human endometase (matrix metalloproteinase 26) from endometrial tumor. J Biol Chem 275: 20540-20544, 2000
64. Overall CM: Matrix metalloproteinase substrate binding domains, modules and exocytes. In: I.M. Clark (ed). Matrix Metalloproteinase Protocols. Humana Press, Totowa, NJ, 2001, pp 79-120
65. Knauper V, Docherty AJ, Smith V, Tache H, Murphy G: Analysis of the contribution of the hinge region of human neutrophil collagenase (HNC, MMP-8) to stability and collagenolytic activity by alanine scanning mutagenesis. FEBS Lett 405: 60-64 1997
66. Itoh A, Itoh Y, Kajita M, Kino H, Mori H, Okada A, Seiki M: Membrane type 4 matrix metalloproteinase (MT4-MMP, MMP-17) is a glycophosphatidylinositol-anchored proteinase. J Biol Chem 274: 34260-34266, 1999
67. Kojima S, Itoh Y, Matsumoto S, Masuho Y, Seiki M: Membrane type 6 matrix metalloproteinase (MT6-MMP, MMP-25) is the second glycosyl phosphatidyl inositol (GPI-anchored MMP) FEBS Lett 480: 142-146, 2000
68. Okada Y, Harris ED Jr, Nagase H: The precursor of a metallopeptidase from human rheumatoid synovial fibroblasts purification and mechanism of activation by endopeptidases and 4-aminophenylmercuric acetate. Biochem J 254: 731-741, 1988
69. Breathnach R, Matrisian LM, Gesnel M-C, Staub A, Leroy P: Sequences coding for part of oncogene induced transin are highly conserved in a related rat gene. Nucleic Acid Res 15: 1139-1151, 1987
70. Hasty KA, Pourmotabbed TF, Goldberg GI, Thompson JP, Spinella DG, Stevens RM, Mainardi CL: Human neutrophil collagenase: A distinct gene product with homology to other matrix metalloproteinases. J Biol Chem 265: 11421-11424, 1990