Circadian changes in relative abundance of two photosynthetic transcripts in the marine macroalga Kappaphycus alvarezii (rhodophyta)

Journal of Phycology

Volumn 39, Issue 5, 2003, Pages 888-896

  Jacobsen, Sabine ^a   Lüning, Klaus ^a   Goulard, Fabienne ^b,c  

^a ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

^b INSTITUT UNIVERSITAIRE EUROPÉEN DE LA MER   (France)

^c CEMAGREF   (France)

Author keywords

5 Bisphoshate carboxylase oxygenase; Circadian clock; Marine macroalgae; Photosynthesis; Phycoerythrin; Red algae; Ribulose 1; Transcriptional gene expression

Indexed keywords

CIRCADIAN RHYTHM; GENE EXPRESSION; MACROALGA; PHOTOSYNTHESIS; RELATIVE ABUNDANCE;

ALGAE; CYANOBACTERIA; EUKARYOTA; HALOPHILA; KAPPAPHYCUS; KAPPAPHYCUS ALVAREZII; PROKARYOTA; RHODOPHYTA;

EID: 0142063546     PISSN: 00223646     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1529-8817.2003.03022.x     Document Type: Article

References (62)

1. Apt, K. E. & Grossman, A. R. 1993. Characterization and transcript analysis of the major phycobiliprotein subunit genes from Aglaothamnion neglectum (Rhodophyta). Plant Mol. Biol. 21:27-38.
2. Ask, E. I. & Azanza, R. V. 2002. Advances in cultivation technology of commercial cuchcumatoid species: a review with suggestions for future research. Aquaculture 206:257-77.
3. Assali, N. E., Martin, W. F., Sommerville, C. C. & Loiseaux-de Goer, S. 1991. Evolution of the Rubisco operon from prokaryotes to algae: structure and analysis of the rbcS gene of the brown alga Pylaiella littoralis. Plant Mol. Biol. 17:853-63.
4. Bernard, C., Thomas, J. C., Mazel, D., Mousseau, A., Castets, A. M., Tandeau de Marsac, N. & Dubacq, J. P. 1992. Characterization of the genes encoding phycoerythrin in the red alga Rhodella violacea: evidence for a splitting of the rpeB gene by an intron. Proc. Natl. Acad. Sci. USA 89:9564-8.
5. Britz, S. J. & Briggs, W. R. 1976. Circadian rhythms of chloroplast orientation and photosynthetic capacity in Ulva. Plant Physiol. 58:22-7.
6. Devlin, P. F. 2002. Signs of the time: environmental input to the circadian clock. J. Exp. Bot. 53:1535-50.
7. Doyle, M. R., Davis, S. J., Bastow, R. M., McWatters, H. G., KozmaBognár, L., Nagy, F., Millar, A. J. & Amasino, R. M. 2002. The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. Nature. 419:74-7.
8. Driessche, T. V. 1966. Circadian rhythms in Acetabularia: photosynthetic capacity and chloroplast shape. Exp. Cell Res. 42:18-30.
9. Dunlap, J. C. 1999. Molecular bases for circadian clocks. Cell 96: 271-90.
10. Fejes, E. & Nagy, F. 1998. Molecular analysis of circadian clock-regulated gene expression in plants: features of the "output" pathways. In Lumsden, P. J. & Millar, A. J. [Eds.] Biological Rhythms and Pholoperiodisms in Plants. BIOS Scientific Publishers Ltd., Oxford, pp. 99-118.
11. Fujiwara, S., Ishida, N. & Tsuzuki, M. 1996. Circadian expression of the carbonic anhydrase gene, Cah1, in Chlamydomonas reinhardtii. Plant Mol. Biol. 32:745-9.
12. Granbom, M., Pedersén, M., Kadel, P. & Lüning, K. 2001. Circadian rhythm of photosynthetic oxygen evolution in Kappaphycus alvarezii (Rhodophyta): dependence on light quantity and quality. J. Phycol. 37:1020-5.
13. Green, R. M. & Tobin, E. M. 2002. The role of CCA1 and LHY in the plant circadian clock. Dev. Cell 2:516-8.
14. Grobbelaar, N., Huang, T. C., Lin, H. Y. & Chow, T. J. 1986. Dinitrogen-fixing endogenous rhythm in Synechococcus RF-1. FEMS Microbiol. Lett. 37:173-7.
15. Grossman, A. R., Schaefer, M. R., Chiang, G. G. & Collier, J. L. 1993. The phycobilisome, a light-harvesting complex responsive to environmental conditions. Microbiol. Rev. 57:725-49.
16. Harmer, S. L., Hogenesch, J. B., Straume, M., Chang, H.-S., Han, B., Zhu, T., Wang, X., Kreps, J. A. & Kay, S. A. 2000. Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290:2110-3.
17. Hastings, J. W., Rusak, B. & Boulos, Z. 1991. Circadian rhythms: the physiology of biological timing. In Prosser, C. L. [Ed.] Neural and Integrative Animal Physiology. Comparative Animal Physiology, 4th ed. Wiley-Liss, New York, pp. 435-546.
18. Hwang, S. & Herrin, D. L. 1994. Control of lhc gene transcription by the circadian clock in Chlamydomonas reinhardtii. Plant Mol. Biol. 26:557-69.
19. Jacobshagen, S. & Johnson, C. H. 1994. Circadian rhythms of gene expression in Chlamydomonas reinhardtii: circadian cycling of mRNA abundances of cab II, and possibly of β-tubulin and cytochrome c. Eur. J. Cell Biol. 64:142-52.
20. Johnson, C. H. 2001. Endogenous timekeepers in photosynthetic organisms. Annu. Rev. Physiol. 63:695-728.
21. Johnson, C. H. & Kondo, T. 2001. Circadian rhythms in unicellular organisms. In Takahashi, J. S., Turek, F. W. & Moore, R. Y. [Eds.] Handbook of Behavioral Neurobiology. Plenum Press, New York, pp. 61-77.
22. Kaftan, D., Meszaros, T., Whitmarsh, J. & Nedbal, L. 1999. Characterization of photosystem II activity and heterogeneity during the cell cycle of the green alga Scenedesmus quadricauda. Plant Physiol. 120:433-41.
23. Kawazoe, R., Hwang, S. & Herrin, D. L. 2000. Requirement for cytoplasmic protein synthesis during circadian peaks of transcription of chloroplast-encoded genes in Chlamydomonas. Plant Mol. Biol. 44:699-709.
24. Kondo, T. & Ishiura, M. 2000. The circadian clock of cyanobacteria. BioEssays 22:10-5.
25. Kostrzewa, M., Valentin, K., Maid, U., Radetzky, R. & Zetsche, K. 1990. Structure of the rubisco operon from the multicellular red alga Antithamnion spec. Curr. Genet. 18:465-9.
26. Lichtlé, C., Garnier, F., Bernard, C., Zabulon, G., Spilar, A., Thomas, J.-C. & Etienne, A.-L. 1996. Differential transcription of phycobiliprotein components in Rhodella violacea. Plant Physiol. 112:1045-54.
27. Lonergan, T. A. & Sargent, M. L. 1979. Regulation of the photosynthesis rhythm in Euglena gracilis. Plant Physiol. 64:99-103.
28. Lopes, P. F., de Oliveira, M. C. & Colepicolo, P. 2002. Characterization and daily variation of nitrate reductase in Gracilaria tenuistipitata (Rhodophyta). Biochem. Biophys. Res. Commun. 295:50-4.
29. Lumsden, P. J. & Millar, A. J. [Eds.] 1998. Biological Rhythms and Photoperiodism in Plants. BIOS Scientific Publishers Ltd., Oxford, 284 pp.
30. Lüning, K. 1994. Circadian growth rhythm in juvenile sporophytes of Laminariales (Phaeophyta). J. Phycol. 30:190-9.
31. Lüning, K. 2001. Circadian growth in Porphyra umbilicalis (Rhodophyta): spectral sensitivity of the circadian system. J. Phycol. 37:52-8.
32. Makarov, V. N., Schoschina, E. V. & Lüning, K. 1995. Diurnal and circadian periodicity of mitosis and growth in marine macroalgae. I. Juvenile sporophytes of Laminariales (Phaeophyta). Eur. J. Phycol. 30:261-6.
33. Martin, W., Stoebe, B., Goremykin, V., Hansmann, S., Hasegawa, M. & Kowallik, K. V. 1998. Gene transfer to the nucleus and the evolution of chloroplasts. Nature 393:162-5.
34. McClung, C. R. 2001. Circadian rhythms in plants. Annu. Rev. Physiol. Plant Mol. Biol. 52:139-62.
35. Mishkind, M., Mauzerall, D. & Beale, S. I. 1979. Diurnal variation in situ of photosynthetic capacity in Ulva is caused by a dark reaction. Plant Physiol. 64:896-9.
36. Mittag, M. 2001. Circadian rhythms in microalgae. Int. Rev. Cytol. 206:213-47.
37. Okada, M., Inoue, M. & Ikeda, T. 1978. Circadian rhythm in photosynthesis of the green alga Bryopsis maxima. Plant Cell Physiol. 19:197-202.
38. Paul, J. H., Kang, J. B. & Tabita, F. R. 2000. Diel patterns of regulation of rbcL transcription in a cyanobacterium and a Prymnesiophyte. Mar. Biotechnol. 2:429-36.
39. Piechulla, B. 1993. "Circadian clock" directs the expression of plant genes. Plant Mol. Biol. 22:533-42.
40. Piechulla, B. 1999. Circadian expression of the light-harvesting complex protein genes in plants. Chronobiol. Int. 16:115-28.
41. Pilgrim, M. L. & McClung, C. R. 1993. Differential involvement of the circadian clock in the expression of genes required for ribulose-1,5-bisphosphate carboxylase/oxygenase synthesis, assembly, and activation in Arabidopsis thaliana. Plant Physiol. 103:553-64.
42. Reith, M. & Munholland, J. 1993. A high-resolution gene map of the chloroplast genome of the red alga Porphyra purpurea. Plant Cell 5:465-75.
43. Roell, M. K. & Morse, D. E. 1993. Organization, expression and nucleotide sequence of the operon encoding R-phycoerythrin a and β subunits from the red alga Polysiphonia boldii. Plant Mol. Biol. 21:47-58.
44. Roenneberg, T. & Morse, D. 1993. Two circadian oscillators in one cell. Nature 362:362-4.
45. Salvador, M. L., Klein, U. & Bogorad, L. 1993. Light-regulated and endogenous fluctuations of chloroplast transcript levels in Chlamydomonas. Regulation by transcription and RNA degradation. Plant J. 3:213-9.
46. Salvador, M. L., Klein, U. & Bogorad, L. 1998. Endogenous fluctuations of DNA topology in the chloroplast of Chlamydomonas reinhardtii. Mol. Cell. Biol. 18:7235-42.
47. Sambrook, J. & Russell, D. W. 2001. Molecular Cloning: A Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 2344 pp.
48. Samuelsson, G., Sweeney, B., Matlick, H. A. & Prézelin, B. B. 1983. Changes in photosystem II account for the circadian rhythm in photosynthesis in Gonyaulax polyedra. Plant Physiol. 73:329-31.
49. Schmid, R. & Dring, M. J. 1992. Circadian rhythm and fast responses to blue light of photosynthesis in Ectocarpus (Phaeophyta, Ectocarpales). I. Characterization of the rhythm and the blue-light response. Planta 187:53-9.
50. 2 dependence of photosynthesis. Planta 187:60-6.
51. Spreitzer, R. J. & Salvucci, M. E. 2002. RUBISCO: structure, regulatory interactions, and possibilities for a better enzyme. Annu. Rev. Plant Physiol. Plant Mol. Biol. 53:449-75.
52. Starr, R. & Zeikus, J. A. 1987. UTEX - the culture collection of algae at the University of Texas at Austin. J. Phycol. 23(Suppl.):1-47.
53. Suzuki, L. & Johnson, C. H. 2001. Algae know the time of day: circadian and photoperiodic programs. J. Phycol. 37:933-42.
54. Thain, S. C., Hall, A. H. & Millar, A. J. 2000. Functional independence of circadian clocks that regulate plant gene expression. Curr. Biol. 10:951-6.
55. Thompson, J. D., Higgins, D. G. & Gibson, T. J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-80.
56. Titlyanov, E. A., Titlyanova, T. & Lüning, K. 1996. Diurnal and circadian periodicity of mitosis and growth in marine macroalgae. II. The green alga Ulva pseudocurvata. Eur. J. Phycol. 31:181-8.
57. Toh, K. L., Jones, C. R., He, Y., Eide, E. J., Hinz, W. A., Virshup, D. M., Ptácek, L. J. & Fu, Y.-H. 2001. An hPer2 phosphorylation site mutation in familial advanced sleep phase syndrome. Science 291:1040-3.
58. Valentin, K. & Zetsche, K. 1989. The genes of both subunits of ribulose-1,5-bisphosphate carboxylase constitute an operon on the plastome of a red alga. Curr. Genet. 16:203-9.
59. Valentin, K. & Zetsche, K. 1990. Structure of the Rubisco operon from the unicellular red alga Cyanidium caldarium: evidence for a polyphyletic origin of the plastids. Mol. Gen. Genet. 222:425-30.
60. Waaland, S. D. & Cleland, R. 1972. Development in the red alga Griffithsia pacifica: control by internal and external factors. Planta 105:196-204.
61. Watson, G. M. & Tabita, F. R. 1996. Regulation, unique gene organization, and unusual primary structure of carbon fixation genes from a marine phycoerythrin-containing cyanobacterium. Plant Mol. Biol. 32:1103-15.
62. Woolum, J. C. 1991. A re-examination of the role of the nucleus in generating the circadian rhythm in Acetabularia. J. Biol. Rhythms 6:129-36.