Poly(ADP-ribose) Polymerase-1 Dimerizes at a 5′ Recessed DNA End in Vitro: A Fluorescence Study

Biochemistry

Volumn 42, Issue 42, 2003, Pages 12409-12417

  Pion, Emmanuelle ^a   Bombarda, Elisa ^a   Stiegler, Patrick ^b   Ullmann, G Matthias ^c   Mély, Yves ^a   De Murcia, Gilbert ^b   Gérard, Dominique ^a  

^a UNIVERSITÉ DE STRASBOURG   (France)

^b UPR 9003 du CNRS   (France)

^c UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPY; DIMERS; DNA; ENZYMES; FLUORESCENCE; IONIZING RADIATION; STOICHIOMETRY;

BINDING CONSTANTS;

BIOCHEMISTRY;

ALKYLATING AGENT; DNA; DNA BASE; DOUBLE STRANDED DNA; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE 1; OLIGONUCLEOTIDE; OXIDIZING AGENT; POLY(ADENOSINE DIPHOSPHATE RIBOSE); REPETITIVE DNA; SINGLE STRANDED DNA; TRYPTOPHAN; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

AMINO TERMINAL SEQUENCE; ANISOTROPY; ARTICLE; BINDING AFFINITY; BINDING KINETICS; BINDING SITE; CELL PROLIFERATION; CELL SURVIVAL; DIMERIZATION; DNA BINDING; DNA DAMAGE; DNA FLANKING REGION; DNA FOOTPRINTING; DNA PROTEIN COMPLEX; DNA STRAND BREAKAGE; DNA STRUCTURE; ENZYME ACTIVATION; ENZYME ACTIVITY; EXCISION REPAIR; FLUORESCENCE; HUMAN; IN VITRO STUDY; IONIZING RADIATION; MEASUREMENT; MOLECULAR INTERACTION; MOLECULAR MODEL; MOLECULAR STABILITY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DNA BINDING; PROTEIN DOMAIN; STOICHIOMETRY; TELOMERE; ZINC FINGER MOTIF;

AMINO ACID SEQUENCE; DIMERIZATION; DNA; MOLECULAR SEQUENCE DATA; POLY(ADP-RIBOSE) POLYMERASES; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, FLUORESCENCE;

EID: 0142063409     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0344432     Document Type: Article

References (42)

1. Zhou, B. B., and Elledge, S. J. (2000) Nature 408, 433-439.
2. de Murcia, G., and Shall, S. (2000) From DNA damage and stress signalling to cell death. Poly ADP-ribosylation reactions, Oxford University Press, New York.
3. D'Amours, D., Desnoyers, S., D'Silva, I., and Poirier, G. G. (1999) Biochem. J. 342 (Part 2), 249-268.
4. Simbulan-Rosenthal, C. M., Haddad, B. R., Rosenthal, D. S., Weaver, Z., Coleman, A., Luo, R., Young, H. M., Wang, Z. Q., Ried, T., and Smulson, M. E. (1999) Proc. Natl. Acad. Sci. U.S.A 96, 13191-13196.
5. Dantzer, F., Schreiber, V., Niedergang, C., Trucco, C., Flatter, E., De La Rubia, G., Oliver, J., Rolli, V., Menissier-de Murcia, J., and de Murcia, G. (1999) Biochimie 81, 69-75.
6. de Murcia, J. M., Niedergang, C., Trucco, C., Ricoul, M., Dutrillaux, B., Mark, M., Oliver, F. J., Masson, M., Dierich, A., LeMeur, M., Walztinger, C., Chambon, P., and de Murcia, G. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 7303-7307.
7. Beneke, R., Geisen, C., Zevnik, B., Bauch, T., Muller, W. U., Kupper, J. H., and Moroy, T. (2000) Mol. Cell. Biol. 20, 6695-6703.
8. Doucet-Chabeaud, G., Godon, C., Brutesco, C., de Murcia, G., and Kazmaier, M. (2001) Mol. Genet. Genomics 265, 954-963.
9. Taylor, R. M., Whitehouse, C. J., and Caldecott, K. W. (2000) Nucleic Acids Res. 28, 3558-3563.
10. Petrucco, S., Volpi, G., Bolchi, A., Rivetti, C., and Ottonello, S. (2002) J. Biol. Chem. 277, 23675-23683.
11. Eftink, M. R. (1997) Methods Enzymol. 278, 221-257.
12. Cao, Y., Li, H., Deb, S., and Liu, J. P. (2002) Oncogene 21, 3130-3138.
13. Deng, Z., Lezina, L., Chen, C. J., Shtivelband, S., So, W., and Lieberman, P. M. (2002) Mol. Cell 9, 493-503.
14. Gradwohl, G., Menissier de Murcia, J., Molinete, M., Simonin, F., and de Murcia, G. (1989) Nucleic Acids Res. 17, 7112.
15. Molinete, M., Vermeulen W., Burkle, A., Menissier-de Murcia, J., Kupper, J. H., Hoeijmakers, J. H., and de Murcia, G. (1993) EMBO J. 12, 2109-2117.
16. Menissier-de Murcia, J., Molinete, M., Gradwohl, G., Simonin, F., and de Murcia, G. (1989) J. Mol. Biol. 210, 229-233.
17. Eisinger, J., and Navon, G. (1969) J. Chem. Phys. 50, 2069-2077.
18. Record, M. T., Jr., Lohman, M. L., and De Haseth, P. (1976) J. Mol. Biol. 107, 145-158.
19. Livesey, A. K., and Brochon, J. C. (1987) Biophys. J. 52, 693-706.
20. Gradwohl, G., Menissier de Murcia, J. M., Molinete, M., Simonin, F., Koken, M., Hoeijmakers, J. H., and de Murcia, G. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 2990-2994.
21. de Lange, T. (2002) Oncogene 21, 532-540.
22. Vuilleumier, C., Maechling-Strasser, C., Gerard, D., and Mely, Y. (1997) Anal. Biochem. 244, 183-185.
23. Lakowicz, J. R. (1983) Principles of fluorescence spectroscopy, Wiley, New York.
24. Bialik, C. N., Wolf, B., Rachofsky, E. L., Ross, J. B., and Laws, W. R. (1998) Biophys. J. 75, 2564-2573.
25. Pomerantz, J. L., Wolfe, S. A., and Pabo, C. O. (1998) Biochemistry 37, 965-970.
26. Wang, B. S., and Pabo, C. O. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 9568-9573.
27. Cantor, R. C., and Schimmel, P. R. (1980) Biophysical Chemistry Part III, Freeman Press, San Francisco.
28. Press, W. H., Teukolsky, S. A., Vetterling, W. T., and Flannery, B. P. (1992) Numerical Recipes in C, 2nd ed., Cambridge University Press, Cambridge, U.K.
29. Engelborghs, Y. (2001) Spectrochim. Acta, Part A 57, 2255-2270.
30. Gopalan, V., Golbik, R., Schreiber, G., Fersht, A. R., and Altman, S. (1997) J. Mol. Biol. 267, 765-769.
31. Kamashev, D., and Rouviere-Yaniv, J. (2000) EMBO J. 19, 6527-6535.
32. Cook, B. D., Dynek, J. N., Chang, W., Shostak, G., and Smith, S. (2002) Mol. Cell. Biol. 22, 332-342.
33. Mellors, R. C., Kupfer, A., and Hollender, A. B. (1953) Cancer 6, 372-384.
34. Bauer, P. I., Buki, K. G., Hakam, A., and Kun, E. (1990) Biochem. J. 270, 17-26.
35. Helene, C., and Maurizot, J. C. (1981) CRC Crit. Rev. Biochem. 10, 213-258.
36. Montenay-Garestier, T., Toulme, F., Fidy, J., Toulme, J. J., Le Doan, T., and Helene, C. (1983) Structure and dynamics of peptide-nucleic acid complexes, in Structure, dynamics, interactions and evolution of biological macromolecules (Hélène, C., Ed.) pp 113-128, D. Reidel Publishing Co., Dordrecht, The Netherlands.
37. Kumar, N. V., and Govil, G. (1984) Biopolymers 23, 2009-2024.
38. Bloomfield, V. A., Crothers, D. M., and Tinocco, I. (1999) Nucleic acids: structures, properties, and functions, University Books, Sausalito, CA.
39. Vuilleumier, C., Bombarda, E., Morellet, N., Gerard, D., Roques, B. P., and Mely, Y. (1999) Biochemistry 38, 16816-16825.
40. Bombarda, E., Ababou, A., Vuilleumier, C., Gerard, D., Roques, B. P., Piemont, E., and Mely, Y. (1999) Biophys. J. 76, 1561-1570.
41. Vix, A., and Lami, H. (1995) Biophys. J. 68, 1145-1151.
42. Mendoza-Alvarez, H., and Alvarez-Gonzalez, R. (1993) J. Biol. Chem. 268, 22575-22580.