The potato–Phytophthora infestans interaction transcriptome

Canadian Journal of Plant Pathology

Volumn 25, Issue 3, 2003, Pages 226-231

  Birch, Paul R J ^a   Avrova, Anna O ^a   Armstrong, Miles ^a   Venter, Eduard ^a   Taleb, Nawsheen ^a   Gilroy, Eleanor M ^a   Phillips, Mark S ^a   Whisson, Stephen C ^a  

^a SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

Cdna amplified fragment length polymorphism; Differential gene expression; Field resistance; Hypersensitive response; Microarray; Quantitative trait loci

Indexed keywords

FUNGI; PHYTOPHTHORA; PHYTOPHTHORA INFESTANS; SOLANUM TUBEROSUM;

EID: 0142063373     PISSN: 07060661     EISSN: 17152992     Source Type: Journal    
DOI: 10.1080/07060660309507074     Document Type: Article

References (36)

1. Avrova, A. O., Stewart, H. E., De Jong, W., Heilbronn, J., Lyon, G. D., and Birch, P. R. J., 1999. A cysteine protease gene is expressed early in resistant potato interactions with Phytophthora infestans. Mol. Plant-Microbe Interact., 12:1114–1119.
2. Avrova, A. O., Whisson, S. C., Hein, I., de Luca, S., Venter, E., and Birch, P. R. J., Differential gene expression in Phytophthora infestans prior to and during potato infection [online]. Solving problems in the real world. 8th International Congress of Plant Pathology. Feb.2–72003, Christchurch, New Zealand. Toowoomba, Australia:International Society for Plant Pathology and Australasian Plant Pathology Society Inc.
3. Avrova, A. O., Venter, E., Birch, P. R. J., and Whisson, S. C., 2003b. Profiling and quantifying differential gene transcription in Phytophthora infestans prior to and during the early stages of potato infection. Fungal Genet. Biol., In press
4. Baulcombe, D., 1999. Fast forward genetics based on virus-induced gene silencing. Curr. Opin. Plant Biol., 2:109–113.
5. Beyer, K., Binder, A., Boller, T., and Collinge, M., 2001. Identification of potato genes induced during colonization by Phytophthora infestans. Mol. Plant Pathol., 2:125–135.
6. Beyer, K., Jimenez Jimenez, S., Randall, T. A., Lam, S., Binder, A., Boller, T., and Collinge, M. A., 2002. Characterisation of Phytophthora infestans genes regulated during the interaction with potato. Mol. Plant Pathol., 3:473–485.
7. Birch, P. R. J., and Kamoun, S., 2000. “ Studying interaction tran scriptomes:coordinated analyses of gene expression during plant-microorganism interactions ”. In New technologies for life science:a trends guide, Edited by:Wood, R., 77–82. New York:Elsevier Science.
8. Birch, P. R. J., and Whisson, S. C., 2001. Phytophthora infestans enters the genomics era. Mol. Plant Pathol., 2:257–263.
9. Birch, P. R. J., Avrova, A. O., Duncan, J. M., Lyon, G. D., and Toth, R. L., 1999. Isolation of potato genes that are induced during an early stage of the hypersensitive response to Phytophthora infestans. Mol. Plant-Microbe Interact., 12:356–361.
10. Bradshaw, J. E., Wastie, R. L., Stewart, H. E., and Mackay, G. R., Breeding for resistance to late blight in Scotland. European Association for Potato Research, Pathology Section Conference. Sept.1995. Phytophthora infestans 150, Edited by:Dowley, L. J., Bannon, E., Cooke, L. R., Keane, T., and Sullivan, E., pp. 246–254. Dublin, Ireland:Trinity College.
11. Diatchenko, L., Lau, Y.-F. C., Campbell, A. P., Chenchik, A., Moqadam, F., Huang, B., Lukyanov, S., Lukyanov, K., Gurskaya, N., Sverdlov, E. D., and Siebert, P. D., 1996. Suppression subtractive hybridization:a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. U.S.A., 93:6025–6030.
12. Duncan, J. M., 1999. Phytophthora - an abiding threat to our crops. Microbiol. Today, 26:114–116.
13. Gebhardt, C., and Valkonen, J. P. T., 2001. Organisation of genes controlling disease resistance in the potato genome. Annu. Rev. Phytopathol., 39:79–102.
14. Görnhardt, B., Rouhara, I., and Schmelzer, E., 2000. Cyst germination proteins of the potato pathogen Phytophthora infestans share homology with human mucins. Mol. Plant-Microbe Interact., 13:32–42.
15. International Potato Center. 1996–2002. “ Potato ”. In Statistics [online], Lima, Peru:International Potato Center. (c)1996-2002Available from http://www.cipotato.org/potato/POTstats.htm [accessed 21 July 2003].
16. Kamoun, S., Huitema, E., and Vleeshouwers, V. G. A. A., 1999a. Resistance to oomycetes:a general role for the hypersensitive response?. Trends Plant Sci., 4:196–200.
17. Kamoun, S., Hraber, P., Sobral, B., Nuss, D., and Govers, F., 1999b. Initial assessment of gene diversity for the oomycete pathogen Phytophthora infestans based on expressed sequences. Fungal Genet. Biol., 28:94–106.
18. Kamoun, S., Dong, S., Hamada, W., Huitema, E., Kinney, D., Morgan, W. R., Styer, A., Testa, A., and Torto, T. A., 2002. From sequence to phenotype:functional genomics of Phytophthora. Can. J. Plant Pathol., 24:6–9.
19. Liu, Y., Schiff, M., and Dinesh-Kumar, S. P., 2002. Virus-induced gene silencing in tomato. Plant J., 31:777–786.
20. Mayer, K., and Mewes, H.-W., 2002. How can we deliver the large plant genomes? Strategies and perspectives. Curr. Opin. Plant Biol., 5:173–177.
21. National Center for Genome Resources. 2003. Phytophthora functional genomics database [online], (c)2003 National Center for Genome Resources. Available from http://www.pfgd.org/[accessed 21 July 2003].
22. Pieterse, C. M. J., Risseeuw, E. P., and Davidse, L. C., 1991. An in planta induced gene of Phytophthora infestans codes for ubiquitin. Plant Mol. Biol., 17:799–811.
23. Pieterse, C. M. J., Verbakel, H. M., Spaans, J. H., Davidse, L. C., and Govers, F., 1993. Increased expression of the calmodulin gene of the late blight fungus Phytophthora infestans during pathogenesis on potato. Mol. Plant-Microbe Interact., 6:164–172.
24. Pieterse, C. M. J., van West, P., Verbakel, H. M., Brasse, P. W. H. M., van den Berg-Velthuis, G. C. M., and Govers, F., 1994a. Structure and genomic organisation of the ipiB and ipiO gene clusters of Phytophthora infestans. Gene (Amsterdam), 138:67–77.
25. Pieterse, C. M. J., Derken, A.-M. C. E., Folders, J., and Govers, F., 1994b. Expression of the Phytophthora infestans ipiB and ipiO genes in planta and in vitro. Mol. Gen. Genet., 244:269–277.
26. Qutob, D., Hraber, P. T., Sobral, B. W., and Gijzen, M., 2000. Comparative analysis of expressed sequences in Phytophthora sojae. Plant Physiol. (Bethesda), 123:243–254.
27. Ronning, C. M., Stegalkina, S. S., Ascenzi, R. A., Bougri, O., Hart, A. L., Utterbach, T. R., Vanaken, S. E., Riedmuller, S. B., White, J. A., Cho, J., Pertea, G. M., Lee, Y., Karamycheva, S., Sultana, R., Tsai, J., Quackenbush, J., Griffiths, H. M., Restrepo, S., Smart, C. D., Fry, W. E., Van Der Hoeven, R., Tanksley, S., Zhang, P., Jin, H., Yamamoto, M. L., Baker, B. J., and Buell, C. R., 2003. Comparative analyses of potato expressed sequence tag libraries. Plant Physiol. (Bethesda), 131:419–429.
28. Soanes, D. M., Skinner, W., Keon, J., Hargreaves, J., and Talbot, N. J., 2002. Genomics of phytopathogenic fungi and the development of bioinformatic resources. Mol. Plant-Microbe Interact., 15:421–427.
29. The Institute for Genomic Research. 1999-2003. NSF potato functional genomics (funded by the National Science Foundation) [online], (c)1999–2003 The Institute for Genomic Research. Available from http://www.tigr.org/tdb/potato/[accessed 21 July 2003].
30. Torto, T. A., Li, S., Styer, A., Huitema, E., Testa, A., Gow, N. A. R., van West, P., and Kamoun, S., 2003. EST mining and functional expression assays identify effector proteins from the plant pathogen Phytophthora. Genome Res., 13:1675–1685.
31. Tyler, B. M., 2001. Genetics and genomics of the oomycete-host interface. Trends Genet., 17:611–614.
32. van West, P., de Jong, A. J., Judelson, H. S., Emons, A. M., and Govers, F., 1998. The ipiO gene of Phytophthora infestans is highly expressed in invading hyphae during infection. Fungal Genet. Biol., 23:126–138.
33. Vleeshouwers, V. G., van Dooijeweert, W., Govers, F., Kamoun, S., and Colon, L. T., 2000. The hypersensitive response is associated with host and nonhost resistance to Phytophthora infestans. Planta (Berlin), 210:853–864.
34. Wastie, R. L., 1991. “ Breeding for resistance ”. In Advances in plant pathology, Phytophthora infestans, the cause of late blight of potato Edited by:Ingram, D. S., and Williams, P. H., Vol. 7, 193–223. London, U.K:Academic Press.
35. Waugh, M., Hraber, P., Weller, J., Wu, Y., Chen, G., Inman, J., Kiphart, D., and Sobral, B., 2000. The Phytophthora genome initiative database:informatics and analysis for distributed pathogenomic research. Nucl. Acids Res., 28:87–90.
36. Whisson, S. C., van der Lee, T., Bryan, G., Waugh, R., Govers, F., and Birch, P. R. J., 2001. Physical mapping across an avirulence locus of Phytophthora infestans using a highly representative, large-insert bacterial artificial chromosome library. Mol. Genet. Genomics, 266:289–295.