Microbial community responsible for the decomposition of rice straw in a paddy field: Estimation by phospholipid fatty acid analysis

Biology and Fertility of Soils

Volumn 38, Issue 5, 2003, Pages 288-295

  Nakamura, Asumi ^a,b   Tun, Cho Cho ^a,c   Asakawa, Susumu ^a   Kimura, Makoto ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b Home   (Japan)

^c NONE   (Myanmar)

Author keywords

Decomposition; Paddy field; Phospholipid fatty acids; Rice straw; Upland and flooded conditions

Indexed keywords

COMMUNITY STRUCTURE; DECOMPOSITION; PADDY FIELD; SOIL AMENDMENT; SOIL MICROORGANISM; STRAW;

CELLULAR ORGANISMS; FUNGI; MICROBIOTA; NEGIBACTERIA; POSIBACTERIA;

EID: 0142027960     PISSN: 01782762     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00374-003-0658-6     Document Type: Article

References (29)

1. Aoki S (1996) Black-Box: data alalysis on the www.http://aoki2. si.gunma-u.ac.jp/Blackbox/Blackbox.html
2. Arao T, Okano S, Kanamori T (1998) Analysis of the phospholipid fatty acids of upland light colored andosol and the relationship among the size of biomass based on phospholipid fatty acid analyses, microscopical counts and chloroform fumigation-incubation. Jpn J Soil Sci Plant Nutr 69:38-46
3. Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37:911-917
4. Bossio DA, Scow KM (1998) Impacts of carbon and flooding on soil microbial communities: phospholipid fatty acid profiles and substrate utilization patterns. Microb Ecol 35:265-278
5. Bossio DA, Scow KM, Gunapala N, Graham KJ (1998) Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microb Ecol 36:1-12
6. Cahyani VR, Watanabe A, Matsuya K, Asakawa S, Kimura M (2002) Succession of microbiota estimated by phospholipid fatty acid analysis and changes in organic constituents during the composting process of rice straw. Soil Sci Plant Nutr 48:735-743
7. Cultivating Technique Laboratory (eds) (1999) Table of meteorological data. In: Experimental and research report in 1998. Anjo Research and Extension Station, Aichi-ken Agricultural Research Center, Anjo, pp 128
8. Cultivating Technique Laboratory (eds) (2001) Table of meteorological data in 1999. In: Experimental and research report in 1999 and 2000. Anjo Research and Extension Station, Aichiken Agricultural Research Center, Anjo, pp 85
9. Frostegård Å, Bååth E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol Fertil Soils 22:59-65
10. Hirota T (2001) Statistical macros for Excel. http://members. fortunecity.com/columbo/stat/
11. Kimura M, Tun CC (1999) Microscopic observation of the decomposition process of leaf sheath of rice straw and colonizing microorganisms during the cultivation period of paddy rice. Soil Sci Plant Nutr 45:427-437
12. Kimura M, Miyaki M, Fujinaka K, Maie N (2001) Microbiota responsible for the decomposition of rice straw in a submerged paddy soil estimated from phospholipid fatty acid composition. Soil Sci Plant Nutr 47:569-578
13. Kroppenstedt RM (1992) The genus Nocardiopsis. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds) The prokaryotes, 2nd edn, vol 2. Springer, New York Berlin Heidelberg, pp 1139-1156
14. Lechevalier H, Lechevalier MP (1988) Chemotaxonomic use of lipids - an overview. In: Ratledge C, Wilkinson SG (eds) Microbial lipids, vol 1. Academic Press, London, pp 869-902
15. Lösel DM (1988) Fungal lipids. In: Ratledge C, Wilkinson SG (eds) Microbial lipids, vol 1. Academic Press, London, pp 699-806
16. Okabe A, Toyota K, Kimura M (2000) Seasonal variations of phospholipid fatty acid composition in the floodwater of a Japanese paddy field under a long-term fertilizer trial. Soil Sci Plant Nutr 46:177-188
17. O'Leary WM, Wilkinson SG (1988) Gram-positive bacteria. In: Ratledge C, Wilkinson SG (eds) Microbial lipids, vol 1. Academic Press, London, pp 117-202
18. Tun CC, Kimura M (2000) Microscopic observation of the decomposition process of leaf blade of rice straw and colonizing microorganisms in a Japanese paddy field soil during the cultivation period of paddy rice. Soil Sci Plant Nutr 46:127-137
19. 13C-enriched rice straw. J Geophys Res 103:8237-8242
20. 4 carbon emitted from rice paddies. J Geophys Res 104:23623-23629
21. Weber S, Stubner S, Conrad R (2001) Bacterial populations colonizing and degrading rice straw in anoxic paddy soil. Appl Environ Microbiol 67:1318-1327
22. White DC, Davis WM, Nickels JS, King JD, Bobbie RJ (1979) Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia 40:51-62
23. White DC, Pinkart HC, Ringelberg DB (1997) Biomass measurements: biochemical approaches. In: Hurst CJ, Knudsen GR, McInerney MJ, Stetzenbach LD, Walter MV (eds) Manual of environmental microbiology. ASM Press, Washington, D.C., pp 91-101
24. Wilkinson SG (1988) Gram-negative bacteria. In: Ratledge C, Wilkinson SG (eds) Microbial lipids, vol 1. Academic Press, London, pp 299-488
25. Yagi K, Minami K (1990) Effect of organic matter application on methane emission from some Japanese paddy fields. Soil Sci Plant Nutr 36:599-610
26. Yoneyama T, Yoshida T (1977a) Decomposition of rice residue in tropical soils. I. Nitrogen uptake by rice plants from straw incorporated, fertilizer (ammonium sulfate) and soil. Soil Sci Plant Nutr 23:33-40
27. Yoneyama T, Yoshida T (1977b) Decomposition of rice residue in tropical soils. II. Immobilization of soil and fertilizer nitrogen by intact rice residue in soil. Soil Sci Plant Nutr 23:41-48
28. Yoneyama T, Yoshida T (1977c) Decomposition of rice residue in tropical soils. III. Nitrogen mineralization and immobilization of rice residue during its decomposition in soil. Soil Sci Plant Nutr 23:175-183
29. Zelles L (1999) Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: a review. Biol Fertil Soils 29:111-129