Discrimination between gene expression patterns in the invasive margin and the tumour core of malignant melanomas

Melanoma Research

Volumn 13, Issue 5, 2003, Pages 503-509

  Roesch, Alexander ^a   Vogt, Thomas ^a   Stolz, Wilhelm ^b   Dugas, Martin ^c   Landthaler, Michael ^a   Becker, Bernd ^a  

^a UNIVERSITY OF REGENSBURG   (Germany)

^b Klinikum Schwabing   (Germany)

^c UNIVERSITY OF MUNICH   (Germany)

Author keywords

Cluster analysis; Gene expression; Melanoma

Indexed keywords

COMPLEMENTARY DNA; INOSITOL TRISPHOSPHATE 3 KINASE; INTERLEUKIN 3 RECEPTOR; ISOENZYME; PHOSPHOENOLPYRUVATE CARBOXYKINASE (GTP); RECEPTOR SUBUNIT; RIBOSOME PROTEIN;

ALGORITHM; ARTICLE; ASPERGILLUS NIDULANS; CANCER GENETICS; CANCER GROWTH; CANCER INVASION; CLUSTER ANALYSIS; DNA MICROARRAY; GENE EXPRESSION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC CODE; GROWTH CURVE; HUMAN; HUMAN TISSUE; LASER PRESSURE CATAPULTING MICRODISSECTION; MELANOMA; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; SIGNAL NOISE RATIO; STATISTICAL ANALYSIS; TECHNIQUE;

ALGORITHMS; CLUSTER ANALYSIS; DISEASE PROGRESSION; DNA, COMPLEMENTARY; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; INTERLEUKIN-3 RECEPTOR ALPHA SUBUNIT; LASERS; MELANOMA; NEOPLASM INVASIVENESS; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); PROGNOSIS; PROTEIN ISOFORMS; PROTEIN-SERINE-THREONINE KINASES; RECEPTORS, INTERLEUKIN-3; UP-REGULATION;

EID: 0142025373     PISSN: 09608931     EISSN: None     Source Type: Journal    
DOI: 10.1097/00008390-200310000-00009     Document Type: Article

References (35)

1. Elwood JM, Koh HK. Etiology, epidemiology, risk factors, and public health issues of melanoma. Curr Opin Oncol 1994; 6(2):179-187.
2. Armstrong BK, Kricker A. Cutaneous melanoma. Cancer Surv 1994; 20:219-240.
3. Clark WH Jr, Eider DE, Van Horn M. The biologic forms of malignant melanoma. Hum Pathol 1986; 17(5):443-450.
4. Gutgemann A, Golob M, Muller S, Buettner R, Bosserhoff AK. Isolation of invasion-associated cDNAs in melanoma. Arch Dermatol Res 2001; 293(6):283-290.
5. Albino AP, Reed, JA, McNutt NS. Molecular biology of cutaneous malignant melanoma. In: DeVita V, Hellman S, Rosenberg SA (editors). Cancer: Principles and Practice of Oncology, 5th edition. Philadelphia: Lippincott-Raven; 1997, pp. 1935-1946.
6. Hofmann UB, Westphal JR, Van Kraats AA, Ruiter DJ, Van Muijen GN. Expression of integrin alpha(v)beta(3) correlates with activation of membrane-type matrix metalloproteinase-1 (MT1-MMP) and matrix metalloproteinase-2 (MMP-2) in human melanoma cells in vitro and in vivo. Int J Cancer 2000; 87(1):12-19.
7. Kataoka TR, Ito A, Asada H, Watabe K, Nishiyama K, Nakamoto K, et al. Annexin VII as a novel marker for invasive phenotype of malignant melanoma. Jpn J Cancer Res 2000; 91(1):75-83.
8. Fink L, Kohlhoff S, Stein MM, Hanze J, Weissmann N, Rose F, et al. cDNA array hybridization after laser-assisted microdissection from non-neoplastic tissue. Am J Pathol 2002; 160(1):81-90.
9. Brown PO, Botstein D. Exploring the new world of the genome with DNA microarrays. Nat Genet 1999; 21(1 suppl):33-37.
10. Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999; 286(5439):531-537.
11. Bittner M, Meltzer P, Chen Y, Jiang Y, Seftor E, Hendrix M, et al. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 2000; 406(6795):536-540.
12. Rumpler G, Becker B, Hafner C, McClelland M, Stolz W, Schmitt R, et al. Identification of differentially expressed genes in models of melanoma progression by cDNA array analysis: SPARC, MIF and a novel cathepsin protease characterize aggressive phenotypes. Exp Dermatol 2003; 12: in press.
13. Mariani L, McDonough WS, Hoelzinger DB, Beaudry C, Kaczmarek E, Coons SW, et al. Identification and validation of P311 as a glioblastoma invasion gene using laser capture microdissection. Cancer Res 2001; 61(10):4190-4196.
14. Emmert-Buck MR, Bonner RF, Smith PD, Chuaqui RF, Zhuang Z, Goldstein SR, et al. Laser capture microdissection. Science 1996; 274(5289):998-1001.
15. Pomeroy SL, Tamayo P, Gaasenbeek M, Sturla LM, Angelo M, McLaughlin ME, et al. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 2002; 415(6870):436-442.
16. Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001; 98(9):5116-5121.
17. Alizadeh AA, Ross DT, Perou CM, van de Rijn M. Towards a novel classification of human malignancies based on gene expression patterns. J Pathol 2001; 195(1):41-52.
18. Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998; 95(25):14863-14868.
19. Becker B, Vogt T, Landthaler M, Stolz W. Detection of differentially regulated genes in keratinocytes by cDNA array hybridization: Hsp27 and other novel players in response to artificial ultraviolet radiation. J Invest Dermatol 2001; 116(6):983-988.
20. Becker B, Vogt T, Stolz W. Transcriptome profiling of melanocytic cells from human malignant melanoma. In: Non-contact laser cataqpulting - A basic procedure for functional genomics and protenics, Westphal G et al. Methods Enymol 2002; 365:96-99.
21. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, et al. Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nat Genet 2001; 29(4):365-371.
22. Pomeroy SL, Tamayo P, Gaasenbeck M, Sturla LM, Angelo M, McLaughlin ME, et al. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 2002; 415(6870):436-442.
23. Mandart E, Dufour ME, Lacroute F. Inactivation of SSM4, a new Saccharomyces cerevisiae gene, suppresses mRNA instability due to RNA14 mutations. Mol Gen Genet 1994; 245(3):323-333.
24. Rouillard JM, Dufour ME, Theunissen B, Mandart E, Dujardin G, Lacroute F. SLS1, a new Saccharomyces cerevisiae gene involved in mitochondrial metabolism, isolated as a syntheticlethal in association with an SSM4 deletion. Mol Gen Genet 1996; 252(6):700-708.
25. Zeitouni N, Eubank DW, Lee AQ, Oxford MG, Freeman TL, Mailliard ME, et al. Phosphoenolpyruvate carboxykinase is induced in growth-arrested hepatoma cells. Biochem Biophys Res Commun 2002; 290(5):1513-1520.
26. Anaya P, Evans SC, Dai C, Lozano G, May GS. Isolation of the Aspergillus nidulans sudD gene and its human homologue. Gene 1998; 211(2):323-329.
27. Henry JL, Coggin DL, King CR. High-level expression of the ribosomal protein L19 in human breast tumors that overexpress erbB-2. Cancer Res 1993; 53(6):1403-1408.
28. Blalock WL, Weinstein-Oppenheimer C, Chang F, Hoyle PE, Wang XY, Algate PA, et al. Signal transduction, cell cycle regulatory, and anti-apoptotic pathways regulated by IL-3 in hematopoietic cells: possible sites for intervention with anti-neoplastic drugs. Leukemia 1999; 13(8):1109-1166.
29. Mengubas K, Jabbar SA, Nye KE, Wilkes S, Hoffbrand AV, Wickremasinghe RG. Inactivation of calcium ion-regulating inositol polyphosphate second messengers is impaired in subpopulations of human leukemia cells. Leukemia 1994; 8(10):1718-1725.
30. Seftor RE. Role of the beta3 integrin subunit in human primary melanoma progression: multifunctional activities associated with alpha(v)beta3 integrin expression. Am J Pathol 1998; 153(5):1347-1351.
31. Spirin KS, Ljubimov AV, Castellon R, Wiedoeft O, Marano M, Sheppard D, et al. Analysis of gene expression in human bullous keratopathy corneas containing limiting amounts of RNA. Invest Ophthalmol Vis Sci 1999; 40(13):3108-3115.
32. Vernon SD, Unger ER, Rajeevan M, Dimulescu IM, Nisenbaum R, Campbell CE. Reproducibility of alternative probe synthesis approaches for gene expression profiling with arrays. J Mol Diagn 2000; 2(3):124-127.
33. Endege WO, Steinmann KE, Boardman LA, Thibodeau SN, Schlegel R. Representative cDNA libraries and their utility in gene expression profiling. Biotechniques 1999; 26(3):542-548, 550.
34. Lawrance IC, Fiocchi C, Chakravarti S. Ulcerative colitis and Crohn's disease: distinctive gene expression profiles and novel susceptibility candidate genes. Hum Mol Genet 2001; 10(5):445-456.
35. Bittner M, Meltzer P, Trent J. Data analysis and integration: of steps and arrows. Nat Genet 1999; 22(3):213-215.