Amplified fragment length polymorphism in Elymus elymoides, Elymus multisetus, and other Elymus taxa

Canadian Journal of Botany

Volumn 81, Issue 8, 2003, Pages 789-804

  Larson, Steven R ^a   Jones, Thomas A ^a   McCracken, Carrie L ^b   Jensen, Kevin B ^a  

^a UTAH STATE UNIVERSITY   (United States)

^b SMITHSONIAN INSTITUTION   (United States)

Author keywords

AFLP; Elymus; Nucleotide diversity; Squirreltail

Indexed keywords

BIODIVERSITY; DNA; GENES; GENETIC ENGINEERING;

NUCLEOTIDES; POLYMORPHISM;

PLANTS (BOTANY);

PHYLOGENETICS;

ELYMUS; ELYMUS ELYMOIDES; ELYMUS MULTISETUS; EMBRYOPHYTA; SITANION;

EID: 0141881578     PISSN: 00084026     EISSN: None     Source Type: Journal    
DOI: 10.1139/b03-077     Document Type: Article

References (49)

1. Aggarwal, R.K., Brar, D.S., Nandi, S., Huang, N., and Khush, G.S. 1999. Phylogenetic relationships among Oryza species revealed by AFLP markers. Theor. Appl. Genet. 98: 1320-1328.
2. Barkworth, M.E. 1997. Taxonomic and nomenclatural comments on the Triticeae in North America. Phytologia, 83: 302-311.
3. Barkworth, M.E., and Dewey, D.R. 1985. Genomically based genera in the perennial Triticeae of North America: identification and membership. Am. J. Bot. 72: 767-776.
4. Barkworth, M.E., Dewey, D.R., and Atkins, R.J. 1983. New concepts in the Triticeae of the Intermountain Region: key and comments. Great Basin Nat. 43: 561-572.
5. Benham, J., Jeung, J.-U., Jasieniuk, M., Kanazin, V., and Blake, T. 1999. Genographer: a graphical tool for automated AFLP and microsatellite analysis. J. Agric. Genomics, 4: article 4. Available from http://www.ncgr.org/jag/ [cited 15 March 2002].
6. Brown, W.V., and Pratt, G.A. 1960. Hybridization and introgression in the grass genus Elymus. Am. J. Bot. 47: 669-676.
7. Carlson, J.R., and Barkworth, M.E. 1997. Elymus wawawaiensis: a species hitherto confused with Pseudoroegneria spicata (Triticeae, Poaceae). Phytologia, 83: 312-330.
8. Church, G.L. 1967a. Artificial hybrids of Elymus virginicus with E. canadensis, interruptus, riparius, and weigandii. Am. J. Bot. 43: 410-417.
9. Church, G.L. 1967b. Taxonomic and genetic relationships of eastern North American species of Elymus with setaceous glumes. Rhodora, 69: 121-162.
10. Dewey, D.R. 1967. Synthetic hybrids of Elymus canadensis x Sitanion hystrix. Bot. Gaz. 128: 11-16.
11. Dewey, D.R. 1969. Synthetic hybrids of Agropyron albicans x A. dasystachyum, Sitanion hystrix, and Elymus canadensis. Am. J. Bot. 56: 664-670.
12. Dewey, D.R. 1982. Genomic and phylogenetic relationships among North American perennial Triticeae. In Grasses and grasslands. Edited by J.R. Estes. Oklahoma University Press, Norman, Okla. pp. 51-88.
13. Dewey, D.R. 1983a. New nomenclatural combinations in the North American perennial Triticeae. Brittonia, 35: 30-33.
14. Dewey, D.R. 1983b. Historical and current taxonomic perspectives of Agropyron, Elymus, and related genera. Crop Sci. 23: 637-642.
15. Dewey, D.R. 1984. The genomic system of classification as a guide to intergeneric hybridization within Triticeae. In Gene manipulation in plant improvement. Edited by J.P. Gustafsen. Plenum Press, New York. pp. 209-279.
16. Efron, B., and Tibshirani, R. 1991. Statistical data analysis in the computer age. Science (Washington, D.C.), 252: 390-395.
17. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39: 783-791.
18. Holmgren, A.H., and Holmgren, N.H. 1977. Poaceae. In Intermountain flora. Vol. 6. Edited by A. Cronquist, A.H. Holmgren, N.H. Holmgren, J.L. Reveal, and P.K. Holmgren. Columbia University Press, New York. pp. 175-464.
19. Innan, H., Terauchi, R., Kahl, G., and Tajima, F. 1999. A method for estimating nucleotide diversity from AFLP data. Genetics, 151: 1157-1164.
20. Jensen, K.B., Zhang, Y.F., and Dewey, D.R. 1990. Mode of pollination of perennial species of the Triticeae in relation to genomically defined genera. Can. J. Plant Sci. 70: 215-225.
21. Jensen, K.B., Asay, K.H., and Jones, T.A. 1997. ARS germplasm holdings of grasses and legumes including the Triticeae collection, native plant collection, and native and introduced legumes at Logan, UT. In Systematic collections of the Agricultural Research Service. Edited by J.R. Lichtenfels. U.S. Dep. Agric. Misc. Publ. No. 1343.
22. Jones, T.A. 1998. Viewpoint: The present status and future prospects of squirreltail research. J. Range Manage. 51: 326-331.
23. Jones, T.A., Nielson, D.C., Arredondo, J.T., and Redinbaugh, M.G. 2002. Characterization of diversity among three squirreltail taxa. J. Range Manage. 56: 474-482.
24. Keller, W. 1948. Interpretation of self-fertility in grasses by frequency distributions. J. Am. Soc. Agron. 40: 894-900.
25. Knapp, E.E., and Rice, K.J. 1998. Comparison of isozymes and qualitative traits for evaluating patterns of genetic variation in purple needlegrass (Nassella pulchra). Conserv. Biol. 12: 1031-1041.
26. Larson, S.R., Jones, T.A., Hu, Z.-M., McCracken, C.L., and Palazzo, A. 2000. Genetic diversity of bluebunch wheatgrass cultivars and a multiple-origin polycross. Crop Sci. 40: 1142-1147.
27. Larson, S.R., Cartier, E., McCracken, C.L., and Dyer, D. 2001. Mode of reproduction and amplified fragment length polymorphism variation in purple needlegrass (Nassella pulchra): utilization of natural germplasm sources. Mol. Ecol. 10: 1165-1177.
28. Löve, A. 1984. Conspectus of the Triticeae. Feddes Repert. 95: 425-521.
29. Mantel, N.A. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220.
30. Mason-Gamer, R.J. 2001. Origin of North American Elymus (Poaceae: Triticeae) allotetraploids based on granule-bound starch synthase gene sequences. Syst. Bot. 26: 757-768.
31. Mason-Gamer, R.J., Orme, N.L., and Anderson, C.M. 2002. Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets. Genome, 45: 991-1002.
32. Massa, A.N., Larson, S.R., Jensen, K.B., and Hole, D.J. 2001. AFLP variation in Bromus section Ceratochloa germplasm of Patagonia. Crop Sci. 41: 1609-1616.
33. Math Forum. 1997. Ask Dr. Math™. Available from http://www. mathforum.com/dr.math/problems/longandlat.html [cited 27 March 2002].
34. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
35. Nei, M., and Li, W.H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 76: 5269-5273.
36. Page, R.D. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357-358.
37. Redinbaugh, M.G., Jones, T.A., and Zhang, Y. 2000. Ubiquity of the St chloroplast genome in St-containing Triticeae polyploids. Genome, 43: 846-852.
38. Rohlf, F.J. 1998. NTSYSpc numerical taxonomy and multivariate analysis system version 2.0. Exeter Software, Setauket, N.Y.
39. Saitou, N., and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
40. Smith, D.C. 1944. Pollination and seed formation in grasses. J. Agric. Res. 68: 79-95.
41. Smouse, P.E., Long, J.C., and Sokal, R.R. 1986. Multiple regression and correlation extensions of the Mantel test of matrix correspondance. Syst. Zool. 35: 627-632.
42. Stebbins, G.L., and Snyder, L.A. 1956. Artificial and natural hybrids in the Gramineae, tribe Hordeae. V. Am. J. Bot. 43: 305-312.
43. Stebbins, G.L., and Vaarama, A. 1954. Artificial and natural hybrids in the Gramineae, tribe Hordeae. VII. Hybirds and allopolyploids between Elymus glaucus and Sitanion spp. Genetics, 39: 378-395.
44. Stebbins, G.L., Valencia, J.I., and Valencia, R.M. 1946. Artificial and natural hybrids in the Gramineae, tribe Hordeae. I. Elymus, Sitanion, and Agropyron. Am. J. Bot. 33: 338-351.
45. Sun, G.-L., Salomon, B., and von Bothmer, R. 1997. Analysis of tetraploid Elymus species using wheat microsatellite markers and RAPD markers. Genome, 40: 806-814.
46. Swofford, D.L. 2000. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4b10. Sinaur Associates, Sunderland, Mass.
47. Vogel, K.P., Arumuganathan, K., and Jensen, K.B. 1999. Nuclear DNA content of perennial grasses of the Triticeae. Crop Sci. 39: 661-667.
48. Vos, PR., Hogers, M., Bleeker, M., Reijans, T., Van de Lee, T., Hornes, M., Frijters, L., Pot, J., Peleman, M., Kuiper, M., and Zabeau, M. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
49. Wilson, F.D. 1963. Revision of Sitanion (Triticeae, Gramineae). Brittonia, 15: 303-323.