Phylogenetic relationships in the North American cyprinid genus Cyprinella (Actinopterygii: Cyprinidae) based on sequences of the mitochondrial ND2 and ND4l genes

Copeia

Volumn , Issue 1, 2000, Pages 1-10

  Broughton, Richard E ^a,b   Gold, John R ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

^b UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYPRINID; MITOCHONDRIAL DNA; PHYLOGENETICS;

NORTH AMERICA;

CYPRINELLA; CYPRINELLA CALLISTIA; CYPRINELLA LABROSA; CYPRINELLA LEPIDA; CYPRINELLA LUTRENSIS; CYPRINELLA MONACHA; CYPRINELLA SPILOPTERA; CYPRINELLA VENUSTA; CYPRINELLA WHIPPLEI; CYPRINELLA ZANEMA; HYBOPSIS;

EID: 0033975310     PISSN: 00458511     EISSN: None     Source Type: Journal    
DOI: 10.1643/0045-8511(2000)2000[0001:PRITNA]2.0.CO;2     Document Type: Article

References (58)

1. AMEMIYA, C. T., AND J. R. GOLD. 1990. Cytogenetic studies in North American minnows (Cyprinidae). XVII. Chromosomal NOR phenotypes of 12 species, with comments on cytosystematic relationships among 50 species. Hereditas 112:231-247.
2. _, P. K. POWERS, AND J. R. GOLD. 1992. Chromosomal evolution in the North American cyprinids, p. 534-550. In: Systematics, historical ecology, and North American freshwater fishes. R. L. Mayden (ed.). Stanford Univ. Press, Stanford, CA.
3. ARCHIE, J. W. 1996. Measures of homoplasy, p. 153-188. In: Homoplasy. M. Sanderson and L. Hufford (eds.). Academic Press, New York.
4. BAILEY, R. M. 1951. A check-list of the fishes of Iowa, with keys for identification, p. 327-377. In: Iowa fish and fishing. J. Harlan and E. Speaker (eds.). Iowa Conservation Commission, Des Moines, IA.
5. _, AND R. H. GIBBS JR. 1956. Notropis callistius, a new cyprinid fish from Alabama, Florida, and Georgia. Occ. Pap. Mus. Zool., Univ. Mich. 576:1-14.
6. BIELAWSKI, J. P., AND J. R. GOLD. 1996. Unequal synonymous substitution rates within and between two protein-coding mitochondrial genes. Mol. Biol. Evol. 13:889-92.
7. BROUGHTON, R. E. 1995. Evolution of duplicated sequences in mitochondrial DNA. Unpubl. Ph.D. diss., Arizona State Univ., Tempe.
8. BUTH, D. G. 1979. Biochemical systematics of the cyprinid genus Notropis. I. The subgenus Luxilus. Biochem. Syst. Ecol. 7:69-79.
9. _, T. E. DOWLING, AND J. R. GOLD. 1991. Molecular and cytological investigations, p. 83-126. In: The biology of cyprinid fishes. I. Winfield, and J. Nelson (eds.). Chapman and Hall, London.
10. CHERNOFF, B., AND R. R. MILLER. 1982. Notropis bocagrande, a new cyprinid fish from Chihuahua, Mexico, with comments on Notropis formosus. Copeia 1982:514-522.
11. COBURN, M. M., AND T. M. CAVENDER. 1992. Interrelationships of North American cyprinid fishes, p. 328-373. In: Systematics, historical ecology, and North American freshwater fishes. R. Mayden (ed.). Stanford Univ. Press, Stanford, CA.
12. COLLINS, T. M., P. H. WIMBERGER, AND G. J. P. NAYLOR. 1994. Compositional bias, character-state bias, and character-state reconstruction using parsimony. Syst. Biol. 43:482-496.
13. CONTRERAS-BALDERAS, S. 1975. Zoogeography and evolution of Notropis lutrensis and "Notropis" ornatus in the Rio Grande basin and range, Mexico and United States (Pisces: Cyprinidae). Unpbl. Ph.D. diss., Tulane Univ., New Orleans, LA.
14. DIMMICK, W. W. 1993. A molecular perspective on the phylogenetic relationships of the barbeled minnows, historically assigned to the genus Hybopsis (Cyprinidae: Cypriniformes). Mol. Phylogenet. Evol. 2:173-184.
15. DOWLING, T. E., AND G. J. P. NAYLOR. 1997. Evolutionary relationships of minnows in the genus Luxilus (Teleostei: Cyprinidae) as determined from cytochrome b sequences. Copeia 1997:758-765.
16. _, G. R. SMITH, AND W. M. BROWN. 1989. Reproductive isolation and introgression between Notropis cornutus and Notropis chrysocephalus (family Cyprinidae): comparison of morphology, allozymes, and mitochondrial DNA. Evolution 43:620-634.
17. FARRIS, J. S. 1969. A successive approximations approach to character weighting. Syst. Zool. 18:374-385.
18. _. 1983. The logical basis of phylogenetic analysis, p. 7-36. In: Advances in cladistics. Vol. 2. N. Platnick and V. Funk (eds.). Columbia Univ. Press, New York.
19. _, M. KALLERSJO, A. G. KLUGE, AND C. BULT. 1995. Testing significance of incongruence. Cladistics 10:315-319.
20. FITCH, W. M., AND J. YE. 1991. Weighted parsimony: does it work? p. 147-154. In: Phylogenetic analysis of DNA sequences. M. Miyamoto and J. Cracraft (eds.). Oxford Univ. Press, New York.
21. GIBBS, R. H. 1957. Cyprinid fishes of the subgenus Cyprinella of Notropis I. Systematic status of the subgenus Cyprinella, with a key to the species exclusive of the lutrensis-ornatus complex. Copeia 1957:185-195.
22. _. 1961. Cyprinid fishes of the subgenus Cyprinella of Notropis. IV. The Notropis galacturus-camurus complex. Am. Midl. Nat. 66:337-354.
23. _. 1963. Cyprinid fishes of the subgenus Cyprinella of Notropis. The Notropis whipplei-analostanus complex. Copeia 1963:511-528.
24. GILBERT, C. R. 1964. The American cyprinid fishes of the subgenus Luxilus (genus Notropis). Bull. Fla. State Mus., Biol. Sci. 8:95-194.
25. GIRARD, C. 1856. Researches upon the cyprinoid fishes inhabiting the freshwaters of the United States of America, west of the Mississippi Valley, from specimens in the museum of the Smithsonian Institution. Proc. Acad. Nat. Sci., Phila. 8:165-213.
26. HARRISON, R. G. 1993. Hybrids and hybrid zones: historical perspective, p. 3-12. In: Hybrid zones and the evolutionary process. R. G. Harrison (ed.). Oxford Univ. Press, New York.
27. HOWELL, W. M., AND J. D. WILLIAMS. 1971. Notropis gibbsi, a new cyprinid fish from the Tallapoosa River system in Alabama and Georgia. Copeia 1971:55-64.
28. HUBBS, C. 1956. Relative variability of hybrids between the minnows, Notropis lepidus and N. proserpinus. Tex. J. Sci. 8:463-469.
29. _. 1972. A checklist of Texas freshwater fishes. Texas Parks Wildlife Dept., Tech. Ser. 11:1-11.
30. HUBBS, C. L. 1955. Hybridization between fish species in nature. Syst. Zool. 4:1-20.
31. _, AND C. W. GREENE. 1928. Further notes on the fishes of the Great Lakes and tributary waters. Pap. Mich. Acad. Sci. Arts Lett. 8:371-392.
32. _, AND R. R. MILLER. 1978. Notropis panarcys, n. sp., and N. proserpinus, cyprinid fishes of subgenus Cyprinella, each inhabiting a discrete section of the Rio Grande complex. Copeia 1978:582-592.
33. JENKINS, R. E., AND N. M. BURKHEAD. 1994. Freshwater fishes of Virginia. American Fisheries Society, Bethesda, MD.
34. _, AND E. A. LACHNER. 1971. Criteria for analysis and interpretation of the American fish genera Nocomis Girard and Hybopsis Agassiz. Smiths. Contrib. Zool. 90:1-15.
35. _, AND _. 1980. Account of Hybopsis zanema, p. 197. In: Atlas of North American freshwater fishes. D. S. Lee, C. R. Gilbert, C. H. Hocutt, R. E. Jenkins, D. E. McAllister, J. R. Stauffer Jr. (eds.). North Carolina State Musuem of Natural History, Raleigh.
36. KLUGE, A. G., AND J. S. FARRIS. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18: 1-32.
37. KOCHER, T. D., AND K. L. CARLETON. 1997. Base substitution in fish mitochondrial DNA: patterns and rates, p. 13-24. In: Molecular systematics of fishes. T. Kocher and C. Stepien (eds.). Academic Press, New York.
38. KRISTMUNDSDÓTTIR, Á. Ý., AND J. R. GOLD. 1996. Systematics of blacktail shiners (Cyprinella venusta) inferred from analysis of mitochondrial DNA. Copeia 1996:773-783.
39. KUHNER, M. K., AND J. FELSENSTEIN. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11:459-68.
40. LOCKHART, J. P. , M. A. STEELE, M. D. HENDY, AND D. PENNY. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Ibid. 11:605-612.
41. MARTIN, A. P., AND E. BERMINGHAM. 1998. Systematics and evolution of lower Central American cichlids inferred from analysis of cytochrome b gene sequences. Mol. Phylogenet. Evol. 9:192-203.
42. MATTHEWS, W. J. 1987. Geographic variation in Cyprinella lutrensis (Pisces: Cyprinidae) in the United States, with notes on Cyprinella lepida. Copeia 1987: 616-637.
43. MAYDEN, R. L. 1988. Vicariance biogeography, parsimony, and evolution in North American freshwater fishes. Syst. Zool. 37:329-355.
44. _. 1989. Phylogenetic studies of North American minnows, with emphasis on the genus Cyprinella (Teleostei: Cypriniformes). Univ. Kans., Mus. Nat. Hist., Misc. Publ. 80:1-189.
45. MINDELL, D. P., AND C. E. THACKER. 1996. Rates of molecular evolution: phylogenetic issues and applications. Annu. Rev. Ecol. Syst. 27:279-303.
46. ROBINS, C. R., R. M. BAILEY, C. E. BOND, J. R. BROOKER, E. A. LACHNER, R. N. LEA, AND W. B. SCOTT (EDS.). 1991. Common and scientific names of fishes from the United States and Canada. American Fisheries Society, Spec. Publ. 20, Bethesda, MD.
47. RICHARDSON, L. R., AND J. R. GOLD. 1995. Evolution of the Cyprinella lutrensis species-complex. II. Systematics and biogeography of the Edwards Plateau shiner, Cyprinella lepida. Copeia 1995:28-37.
48. _, AND _. 1999. Systematics of Cyprinella lutrensis species-group species (Cyprinidae) from the southwestern United States, as inferred from restriction-site variation of mitochondrial DNA. Southwest. Nat. 44:49-56.
49. SCHMIDT, T. R., J. P. BIELAWSKI, AND J. R. GOLD. 1998. Molecular phylogenetics and evolution of the cytochrome b gene in the cyprinid genus Lythrurus (Actinopterygii: Cypriniformes). Copeia 1998:14-22.
50. SIMON, C., F. FRATI, A. BECKENBACH, B. CRESPI, H. LIU, AND P. FLOOK. 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87:651-701.
51. SIMONS, A. M., AND R. L. MAYDEN. 1998. Phylogenetic relationships of the western North American phoxinins (Actinopterygii: Cyprinidae) as inferred from mitochondrial 12S and 16S ribosomal RNA sequences. Mol. Phylogenet. Evol. 9:308-329.
52. SMITH, G. R. 1992. Introgression in fishes: significance for paleontology, cladistics, and evolutionary rates. Syst. Biol. 41:41-57.
53. SNELSON, F. F. 1972. Systematics of the subgenus Lythrurus, genus Notropis (Pisces: Cyprinidae). Bull. Fla. State Mus., Biol. Sci. 17:1-92.
54. SWOFFORD, D. L., G. J. OLSEN, P. J. WADDELL, AND D. M. HILLIS. 1996. Phylogenetic inference, p. 407-514. In: Molecular systematics. D. M. Hillis, C. Moritz, and B. Mable (eds.). Sinauer Associates, Sunderland, MA.
55. TAJIMA, F. 1993. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135: 599-607.
56. TEMPLETON, A. R. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37:221-244.
57. YANG, Z. 1998. On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47:125-133.
58. ZARDOYA, R., AND A. MEYER. 1996. Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol. Biol. Evol. 13:933-942.