Stability of randomly amplified polymorphic DNA fingerprinting in genotyping clinical isolates of Helicobacter pylori

World Journal of Gastroenterology

Volumn 9, Issue 9, 2003, Pages 2021-2024

  Han, Feng Chan ^a   Ng, Han Chong ^a   Ho, Bow ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA;

ARTICLE; BACTERIAL GENOME; BACTERIUM CULTURE; BACTERIUM ISOLATE; CARDIA; CONTROLLED STUDY; DNA FINGERPRINTING; DNA FLANKING REGION; DNA SEQUENCE; DUODENUM ULCER; GENOTYPE; HELICOBACTER PYLORI; HUMAN; HUMAN TISSUE; MAJOR CLINICAL STUDY; NONHUMAN; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; REPRODUCIBILITY; SOUTHERN BLOTTING; STOMACH ANTRUM; STOMACH ULCER;

EID: 0141718417     PISSN: 10079327     EISSN: None     Source Type: Journal    
DOI: 10.3748/wjg.v9.i9.2021     Document Type: Article

References (39)

1. Israel DA, Peek RM. Pathogenesis of Helicobacter pylori-induced gastric inflammation. Aliment Pharmacol Ther 2001; 15: 1271-1290
2. Sanders MK, Peura DA. Helicobacter pylori-associated diseases. Curr Gastroenterol Rep 2002; 4: 448-454
3. Dawsey SM, Mark SD, Taylor PR, Limburg PJ. Gastric cancer and H pylori. Gut 2002; 51: 457-458
4. Blaser MJ. Linking Helicobacter pylori to gastric cancer. Nat Med 2000; 6: 376-377
5. Blaser MJ, Berg DE. Helicobacter pylori genetic diversity and risk of human disease. J Clin Invest 2001; 107: 767-773
6. Wang RT, Wang T, Chen K, Wang JY, Zhang JP, Lin SR, Zhu YM, Zhang WM, Cao YX, Zhu CW, Yu H, Cong YJ, Zheng S, Wu BQ. Helicobacter pylori infection and gastric cancer: Evidence from a retrospective cohort study and nested case-control study in China. World J Gastroenterol 2002; 8: 1103-1107
7. Meining A, Riedl B, Stolte M. Features of gastritis predisposing to gastric adenoma and early gastric cancer. J Clin Pathol 2002; 55: 770-773
8. Han SR, Zschausch HC, Meyer HG, Schneider T, Loos M, Bhakdi S, Maeurer MJ. Helicobacter pylori: Clonal population structure and restricted transmission within families revealed by molecular typing. J Clin Microbiol 2000; 38: 3646-3651
9. Shibata A, Parsonnet J, Longacre TA, Garcia MI, Puligandla B, Davis RE, Vogelman JH, Orentreich N, Habel LA. CagA status of Helicobacter pylori infection and p53 gene mutations in gastric adenocarcinoma. Carcinogenesis 2002; 23: 419-424
10. Lan J, Xiong YY, Lin YX, Wang BC, Gong LL, Xu HS, Guo GS. Helicobacter pylori infection generated gastric cancer through p53-Rb tumor-suppressor system mutation and telomerase reactivation. World J Gastroenterol 2003; 9: 54-58
11. Cai L, Yu SZ, Zhang ZF. Helicobacter pylori infection and risk of gastric cancer in Changle County, Fujian Province, China. World J Gastroenterol 2000; 6: 374-376
12. Liu HF, Liu WW, Fang DC, Wang GA, Teng XC. Relationship between Helicobacter pylori infection and gastric precancerous lesions: A follow-up study. Shijie Huaren Xiaohua Zazhi 2002; 10: 912-915
13. Israel DA, Salama N, Arnold CN, Moss SF, Ando T, Wirth HP, Tham KT, Camorlinga M, Blaser MJ, Falkow S, Peek RM Jr. Helicobacter pylori strain-specific differences in genetic content, identified by microarray, influence host inflammatory responses. J Clin Invest 2001; 107: 611-620
14. Salama N, Guillemin K, McDaniel TK, Sherlock G, Tompkins L, Falkow S. A whole- genome microarray reveals genetic diversity among Helicobacter pylori strains. Proc Natl Acad Sci U S A 2000; 97: 14668-14673
15. Bjorkholm BM, Oh JD, Falk PG, Engstrand LG, Gordon JI. Genomics and proteomics converge on Helicobacter pylori. Curr Opin Microbiol 2001; 4: 237-245
16. Yakoob J, Hu GL, Fan XG, Yang HX, Liu SH, Tan DM, Li TG, Zhang Z. Diversity of Helicobacter pylori among Chinese persons with H pylori infection. APMIS 2000; 108: 482-486
17. Israel DA, Salama N, Krishna U, Rieger UM, Atherton JC, Falkow S, Peek RM Jr. Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc Natl Acad Sci U S A 2001; 98: 14625-14630
18. Sillakivi T, Aro H, Ustav M, Peetsalu M, Peetsalu A, Mikelsaar M. Diversity of Helicobacter pylori genotypes among Estonian and Russian patients with perforated peptic ulcer, living in Southern Estonia. FEMS Microbiol Lett 2001; 195: 29-33
19. Peters TM, Owen RJ, Slater E, Varea R, Teare EL, Saverymuttu S. Genetic diversity in the Helicobacter pylori cag pathogenicity island and effect on expression of anti-CagA serum antibody in UK patients with dyspepsia. J Clin Pathol 2001; 54: 219-223
20. Dong Q, O'Sullivan M, Hall W, Herra C, Kean C, O'Morain C, Buckley M. Identification of a new segment involved in cagA 3′ region variation of Helicobacter pylori. FEMS Immunol Med Microbiol 2002; 25: 51-55
21. Catalano M, Matteo M, Barbolla RE, Jimenez Vega DE, Crespo O, Leanza AG, Toppor J, Antelo P. Helicobacter pylori vacA genotypes, cagA status and ureA-B polymorphism in isolates recovered from an Argentine population. Diagn Microbiol Infect Dis 2001; 41: 205-210
22. Pride DT, Meinersmann RJ, Blaser MJ. Allelic variation within Helicobacter pylori babA and babB. Infect Immun 2001; 69: 1160-1171
23. Yakoob J, Fan X, Hu G, Liu L, Zhang Z. Antibiotic susceptibility of Helicobacter pylori in the Chinese population. J Gastroenterol Hepatol 2001; 16: 981-985
24. Piana A, Are BM, Maida I, Dore MP, Sotgiu G, Realdi G, Mura I. Genotypic characterization of clarithromycin-resistant Helicobacter pylori. New Microbiol 2002; 25: 123-130
25. Gerrits MM, De Zoete MR, Arents NL, Kuipers EJ, Kusters JG. 16S rRNA mutation-mediated tetracycline resistance in Helicobacter pylori. Antimicrob Agents Chemother 2002; 46: 2996-3000
26. Jeong JY, Mukhopadhyay AK, Dailidiene D, Wang Y, Velapatino B, Gilman RH, Parkinson AJ, Nair GB, Wong BC, Lam SK, Mistry R, Segal I, Yuan Y, Gao H, Alarcon T, Brea ML, Ito Y, Kersulyte D, Lee HK, Gong Y, Goodwin A, Hoffman PS, Berg DE. Sequential inactivation of rdxA (HP0954) and frxA (HP0642) nitroreductase genes causes moderate and high-level metronidazole resistance in Helicobacter pylori. J Bacteriol 2000; 182: 5082-5090
27. Nobusato A, Uchiyama I, Kobayashi I. Diversity of restriction-modification gene homologues in Helicobacter pylori. Gene 2000; 259: 89-98
28. Lin LF, Posfai J, Roberts RJ, Kong H. Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc Natl Acad Sci U S A 2001; 98: 2740-2745
29. Takata T, Aras R, Tavakoli D, Ando T, Olivares AZ, Blaser MJ. Phenotypic and genotypic variation in methylases involved in type II restriction-modification systems in Helicobacter pylori. Nucleic Acids Res 2002; 30: 2444-2452
30. Kuipers EJ, Israel DA, Kusters JG, Gerrits MM, Weel J, Van Der Ende A, Van DEr Hulst RWM, Wirth HP, Höök-Nikanne J, Thompson SA, Blaser MJ. Quasispecies development of Helicobacter pylori observed in paired isolates obtained years apart from the same host. J Infect Dis 2000; 181: 273-282
31. Akopyanz N, Bukanov NO, Westblom TU, Kresovich S, Berg DE. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res 1992; 20: 5137-5142
32. Taylor DE, Ge Z, Purych D, Lo T, Hiratsuka K. Cloning and sequence analysis of two copies of a 23S rRNA gene from Helicobacter pylori and association of clarithromycin resistance with 23S rRNA mutations. Antimicrob Agents Chemother 1997; 41: 2621-2628
33. Wong BC, Wang WH, Berg DE, Fung FM, Wong KW, Wong WM, Lai KC, Cho CH, Hui WM, Lam SK. High prevalence of mixed infections by Helicobacter pylori in Hong Kong: Metronidazole sensitivity and overall genotype. Aliment Pharmacol Ther 2001; 15: 493-503
34. Thoreson AC, Hosseini N, Svennerholm AM, Bolin I. Different Helicobacter pylori strains colonize the antral and duodenal mucosa of duodenal ulcer patients. Helicobacter 2000; 5: 69-78
35. Azuma T, Yamakawa A, Yamazaki S, Fukuta K, Ohtani M, Ito Y, Dojo M, Yamazaki Y, Kuriyama M. Correlation between variation of the 3′ region of the cagA gene in Helicobacter pylori and disease outcome in Japan. J Infect Dis 2002; 186: 1621-1630
36. Arents NL, Van Zwet AA, Thijs JC, Kooistra-Smid AM, Van Slochteren KR, Degener JE, Kleibeuker JH, Van Doorn LJ. The importance of vacA, cagA, and iceA genotypes of Helicobacter pylori infection in peptic ulcer disease and gastroesophageal reflux disease. Am J Gastroenterol 2001; 96: 2603-2608
37. Göttke MU, Fallone CA, Barkun AN, Vogt K, Loo V, Trautmann M, Tong JZ, Nguyen TN, Fainsilber T, Hahn HH, Körber J, Lowe A, Beech RN. Genetic variability determinants of Helicobacter pylori: Influence of clinical background and geographic origin of isolates. J Infect Dis 2000; 181: 1674-1681
38. Van Doorn LJ, Glupczyndki Y, Kusters JG, Megraud F, Midolo P, Maggi-Solca N, Queiroz DMM, Nouhan N, Stet E, Quint WGV. Accurate prediction of macrolide resistance in Helicobacter pylori by a PCR line probe assay for detection of mutations in the 23S rRNA gene: Multicenter validation study. Antimicrob Agents Chemother 2001; 45: 1500-1504
39. Burucoa C, Lhomme V, Fauchere JL. Performance criteria of DNA fingerprinting methods for typing of Helicobacter pylori isolates: Experimental results and meta-analysis. J Clin Microbiol 1999; 37: 4071-4080