Patterns of heteroduplex formation associated with the initiation of meiotic recombination in the yeast Saccharomyces cerevisiae

Genetics

Volumn 165, Issue 1, 2003, Pages 47-63

  Merker, Jason D ^a   Dominska, Margaret ^a   Petes, Thomas D ^a  

^a UNIVERSITY OF NORTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MARKER; DOUBLE STRANDED DNA; HETERODUPLEX;

ARTICLE; CROSSING OVER; DNA FLANKING REGION; DNA REPAIR; DNA REPLICATION; DNA STRAND; DNA STRAND BREAKAGE; DNA STRUCTURE; DNA SYNTHESIS; FUNGAL STRAIN; GENE CONVERSION; GENE IDENTIFICATION; GENE LOCATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC RECOMBINATION; GENETIC VARIABILITY; MOLECULAR MODEL; NONHUMAN; POLYMERASE CHAIN REACTION; PREDICTION; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; YEAST;

ALCOHOL OXIDOREDUCTASES; AMINOHYDROLASES; CHROMOSOMES; CROSSING OVER, GENETIC; DNA REPAIR; DNA REPLICATION; GENETIC MARKERS; MEIOSIS; NUCLEIC ACID HETERODUPLEXES; PYROPHOSPHATASES; RECOMBINATION, GENETIC; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 0141455109     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (44)

1. ALANI, E., 1996 The Saccharomyces cerevisae Msh2 and Msh6 proteins form a complex that specifically binds to duplex oligonucleotides containing mismatched DNA base pairs. Mol. Cell. Biol. 16:5604-5615.
2. ALANI, E., R. PADMORE and N. KLECKNER, 1990 Analysis of wild-type and rad50 mutants of yeast suggests an intimate relationship between meiotic chromosome synapsis and recombination. Cell 61: 419-436.
3. ALANI, E., R. A. REENAN and R. D. KOLODNER, 1994 Interaction between mismatch repair and genetic recombination in Saccharomyces cerevisiae. Genetics 137: 19-39.
4. ALLERS, T., and M. LICHTEN, 2001a Differential timing and control of noncrossover and crossover recombination during meiosis. Cell 106: 47-57.
5. ALLERS, T., and M. LICHTEN, 2001b Intermediates of yeast meiotic recombination contain heteroduplex DNA. Mol. Cell 8: 225-231.
6. BAUDAT, F., and A. NICOLAS, 1997 Clustering of meiotic double-strand breaks on yeast chromosome III. Proc. Natl. Acad. Sci. USA 94: 5213-5218.
7. BERGERAT, A., B. DE MASSEY, D. GADELLE, P. C. VAROUTAS, A. NICOLAS et al., 1997 An atypical topoisomerase II from Archaea with implications for meiotic recombination. Nature 386: 414-417.
8. BORDE, V.,T.-C. WU and M. LICHTEN, 1999 Use of a recombination reporter insert to define meiotic recombination domains on chromosome III of Saccharomyces cerevisiae. Mol. Cell. Biol. 19: 4832-4842.
9. DETLOFF, P., and T. D. PETES, 1992 Measurements of excision-repair tracts formed during meiotic recombination in Saccharomyces cerevisiae. Mol. Cell. Biol. 12: 1805-1814.
10. DETLOFF, P., M. A. WHITE and T. D. PETES, 1992 Analysis of a gene conversion gradient at the HIS4 locus in Saccharomyces cerevisiae. Genetics 132: 113-123.
11. FAN, Q., F. XU and T. D. PETES, 1995 Meiosis-specific double-strand DNA breaks at the HIS4 recombination hot spot in the yeast Saccharomyces cerevisiae: control in cis and trans. Mol. Cell. Biol. 15: 1679-1688.
12. FOGEL, S., R. K. MORTIMER and K. LUSNAK, 1981 Mechanisms of meiotic gene conversion, or "wandering on a foreign strand," pp. 289-339 in The Molecular Biology of the Yeast Saccharomyes: Life Cycle and Inheritance, edited by J. N. STRATHERN, E. W. JONES and J. R. BROACH. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
13. Foss, H. M., K. J. HILLERS and F. W. STAHL, 1999 The conversion gradient at HIS4 of Saccharomyces cerevisiae. II. A role for mismatch repair directed by biased resolution of the recombinational intermediate. Genetics 153: 573-583.
14. GERTON, J., J. DERISI, R. SHROFF, M. LICHTEN, P. O. BROWN et al., 2000 Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 97: 11383-11390.
15. GILBERTSON, L. A., and F. W. STAHL, 1996 A test of the double-strand break repair model for meiotic recombination in Saccharomyes cerevisiae. Genetics 144: 27-41.
16. GOLDSTEIN, A. L., and J. H. McCUSKER, 1999 Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15: 1541-1553.
17. HILLERS, K. J., and F. W. STAHL, 1999 The conversion gradient at HIS4 of Saccharomyces cerevisiae. I. Heteroduplex rejection and restoration of Mendelian segregation. Genetics 153: 555-572.
18. HOLLIDAY, R., 1964 A mechanism for gene conversion in fungi. Genet. Res. 5: 282-304.
19. HUNTER, N., and N. KLECKNER, 2001 The single-end invasion: an asymmetric intermediate at the double-strand break to double-Holliday junction transition of meiotic recombination. Cell 106: 59-70.
20. KEENEY, S., C. N. GIROUX and N. KLECKNER, 1997 Meiosis-specific DNA double-strand breaks are catalyzed by Spoll, a member of a widely conserved protein family. Cell 88: 375-384.
21. KIRKPATRICK, D. T., M. DOMINSKA and T. D. PETES, 1998 Conversion-type and restoration-type repair of DNA mismatches formed during meiotic recombination in Saccharomyces cerevisiae. Genetics 149: 1693-1705.
22. KIRKPATRICK, D. T., Q.-Q. FAN and T. D. PETES, 1999 Maximal stimulation of meiotic recombination by a yeast transcription factor requires the transcription activation domain and a DNA binding domain. Genetics 152: 101-115.
23. NAG, D. K., and A. KURST, 1997 A 140-bp-long palindromic sequence induces double-strand breaks during meiosis in the yeast Saccharomyces cerevisiae. Genetics 146: 835-847.
24. NAG, D. K., and T. D. PETES, 1990 Genetic evidence for preferential strand transfer during meiotic recombination in yeast. Genetics 125: 753-761.
25. NAG, D. K., and T. D. PETES, 1991 Seven base-pair inverted repeats in DNA form stable hairpins in vivo in Saccharomyces cerevisiae. Genetics 129: 669-673.
26. NAG, D. K., and T. D. PETES, 1993 Physical detection of heteroduplexes during meiotic recombination in the yeast Saccharomyces cerevisiae. Mol. Cell. Biol. 13: 2324-2331.
27. NAG, D. K., M. A. WHITE and T. D. PETES, 1989 Palindromic sequences in heteroduplex DNA inhibit mismatch repair in yeast. Nature 340: 318-320.
28. NICOLAS, A., and T. D. PETES, 1994 Polarity of meiotic gene conversion in fungi: contrasting views. Experientia 50: 242-252.
29. PAQUES, F., and J. E. HABER, 1999 Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 63: 349-404.
30. PERKINS, D. D., 1949 Biochemical mutants in the smut fungus Ustilago maydis. Genetics 34: 607-626.
31. PETES, T. D., and J. D. MERKER, 2002 Context-dependence of meiotic recombination hotspots in yeast: the relationship between recombination activity of a reporter construct and base composition. Genetics 162: 2049-2052.
32. PETES, T. D., R. E. MALONE and L. S. SYMINGTON, 1991 Recombination in yeast, pp. 407-521 in The Molecular and Cellular Biology of the Yeast Saccharomyces: Genome Dynamics, Protein Synthesis, and Energetics, edited by J. BROACH, E. JONES and J. PRINGLE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
33. PORTAR, S. E., M. A. WHITE and T. D. PETES, 1993 Genetic evidence that the meiofic recombination hotspot at the HIS4 locus of Saccharomyces cerevisiae does not represent a site for a symmetrically processed double-strand break. Genetics 134: 5-19.
34. SCHWACHA, A., and N. KLECKNER, 1995 Identification of double Holliday junctions as intermediates in meiotic recombination. Cell 83: 783-791.
35. SHERMAN, F., G. R. FINK and J. B. HICKS, 1983 Methods in Yeast Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
36. STAHL, F. W., and K. J. HILLERS, 2000 Heteroduplex rejection in yeast? Genetics 154: 1913-1916.
37. STAPLETON, A., and T. D. PETES, 1991 The Tn3 beta-lactamase gene acts as a hotspot for meiotic recombination in yeast. Genetics 127: 39-51.
38. STRUHL, K., D. T. STINCHCOMB, S. SCHERER and R. W. DAVIS, 1979 High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules. Proc. Natl. Acad. Sci. USA 76: 1035-1039.
39. SUN, H., D. TRECO, N. P. SCHULTES and J. W. SZOSTAK, 1989 Double strand breaks at an initiation site for meiotic gene conversion. Nature 338: 87-90.
40. SUN, H., D. TRECO and J. W. SZOSTAK, 1991 Extensive 3′-overhanging, single-stranded DNA associated with the meiosis-specific double-strand breaks at the ARG4 recombination initiation site. Cell 64: 1155-1161.
41. SYMINGTON, L. S., and T. D. PETES, 1988 Expansions and contractions of the genetic map relative to the physical map of yeast chromosome III. Mol. Cell. Biol. 8: 595-604.
42. SZOSTAK, J. W., T. L. ORR-WEAVER, R. J. ROTHSTEIN and F. W. STAHL, 1983 The double-strand-break repair model for recombination. Cell 33: 25-35.
43. WACH, A., A. BRACHAT, R. POHLMANN and P. PHILIPPSEN, 1994 New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 10: 1793-1808.
44. WHITE, M. A., and T. D. PETES, 1994 Analysis of meiotic recombination events near a recombination hotspot in the yeast Saccharomyces cerevisiae. Curr. Genet. 26: 21-30.