Comparisons of quantitative trait locus mapping properties between two methods of recombinant inbred line development

Euphytica

Volumn 132, Issue 2, 2003, Pages 159-166

  Wu, Jixiang ^a,c   Jenkins, Johnie N ^b   Zhu, Jun ^a   McCarty Jr , Jack C ^b   Watson, Clarence E ^c  

^a ZHEJIANG UNIVERSITY   (China)

^b CROP SCIENCE RESEARCH LABORATORY   (United States)

^c MISSISSIPPI STATE UNIVERSITY   (United States)

Author keywords

Bulk Progeny; Composite Interval Mapping (CIM); Quantitative Trait Locus (QTL); Recombinant Inbreds (RI); Single Seed Descent (SSD); Single Hill (SH)

Indexed keywords

EMBRYOPHYTA;

EID: 0043206026     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1024690711867     Document Type: Article

References (34)

1. Bailey, D.W., 1981. Recombinant inbred strains and bilineal congenic strains. In: H.J. Foster, J.D. Small & J.G. Fox (Eds.), The Mouse in Biomedical Research, Vol. 1, pp. 223-239, Academic Press, New York.
2. Burr, B. & F.A. Burr, 1991. Recombinant inbreds for molecular mapping in maize: theoretical and practical considerations. Trends Genet 7: 55-60.
3. Burr, B., F.A. Burr, K.H. Thompson, M.C. Albertson & C. Stuber, 1988. Gene mapping with recombinant inbreds in maize. Genetics 118: 519-526.
4. Empig, L.T. & W.R. Fehr, 1971. Evaluation of methods for generation advance in bulk hybrid soybean populations. Crop Sci 11: 51-54.
5. Fehr, W., 1987. Principles of Cultivar Development: Volume 1, Theory and Technique. Macmillan Publishing Co., New York.
6. Haldane, J.B.S., 1919. The combination of linkage values and the calculation of distance between the loci of linked factors. J Genet 8: 299-309.
7. Haldane, J.B.S. & C.H. Waddington, 1931. Inbreding and linkage. Genetics 16: 357-374.
8. Haley, S.D., L.K. Afanador, P.N. Miklas, J.R. Stavely & J.D. Kelly, 1994. Heterogeneous inbred population are useful as source of near-isogenic lines from RAPD marker localization. Theor Appl Genet 88: 337-342.
9. Ittu, M., N.N. Saulescu, I. Hagima, G. Ittu & P. Mustatea, 2000. Association of fusarium head blight resistance with gliadin loci in a winter wheat cross. Crop Sci 40: 62-67.
10. Jansen, R.C., 1993. Interval mapping of multiple, quantitative trait loci. Genetics 135:205-211.
11. Lander, E.S. & D. Botstein, 1989. Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
12. Li, Z.K., S.R.M. Pinson, J.W. Stansel & W.D. Park, 1995. Indentification of QTL for heading date and plant height in rice using RFLP markers. Theor Appl Genet 91: 374-381.
13. Liste, C. & D. Dean, 1993. Recombinant inbred lines for mapping RFLP and phenotype markers in Arabidopsis thaliana. Plant J 4: 745-750.
14. Lubberstedt, T., A.E. Melchinger, C.C. Schon, H. Utz & D. Klein, 1997. QTL mapping in testcrosses of European flint lines of maize. I. Comparison of different testers for forage yield traits. Crop Sci 37: 921-931.
15. Macchiavelli, R. & J.S. Beaver. 2001. Effect of number of seed bulked and population size on genetic variability when using the multiple-seed procedure of SSD. Crop Sci 41: 1513-1516.
16. Mather, K. & J.L. Jinks, 1982. Biometrical Genetics, 3rd Edn. Chapman and Hall, London.
17. Messmer, M.M., R. Seyfarth, M. Keller, G. Schachermayr, M. Winzeler, S. Zanetti, C. Feuillet & B. Keller, 2000. Genetic analysis of durable leaf rust resistance in winter wheat. Theor Appl Genet 100: 419-431.
18. Miklas, P.N., R. Delorme, V. Stone, M.J. Daly, J.R. Stavely, M.J. Bassett & J.S. Beaver, 2000. Bacterial, fungal, and viral disease resistance loci mapped in a recombinant inbred common bean population ('Dorado'/XAN 176). J Am Soc Hortic Sci 125: 476-481.
19. Park, S.O., D.P. Coyne, N. Mutlu, G. Jung & J.R. Steadman, 1999. Confirmation of molecular markers and flower color associated with QTL for resistance to common bacterial blight in common beans. Annual Report 42: 5-6.
20. Quarrie, S.A., M. Gulli, C. Calestani, A. Steed & N. Marmiroli, 1994. Location of gene regulating drought-induced abscisic acid production on the long arm of chromosome 5A of wheat. Theor Appl Genet 89: 794-800.
21. Reiter, R.S., J.G.K. Williams, K.A. Feldmann, J.A. Rafalski, S.V. Tinggey & P.A. Scolnik, 1992. Global and local genome mapping in Arabidopsis thialiana by unsing recombinant inbred lines and amplified polymorphic DNAs. Proc Natl Acad USA 89: 1477-1481.
22. Schar, W.V.D., C. Alonso-Blanco, K.M. Leon-Kloosterziel, R.C. Jansen, J.W. Van Ooijen & M. Koonneel, 1997. QTL analysis of seed dormancy in Arabidopsis using recombinant inbred lines and MQM mapping. Heredity 79: 190-200.
23. Shappley, Z.W., J.N. Jenkins, J. Zhu & J.C. McCarty Jr., 1998. Quantitative trait loci associated with agronomic and fiber traits of upland cotton. J Cotton Sci 4: 153-163.
24. Simko, I., D. Vreugdenhil, C.S. Jung & G.D. May, 1999. Similarity of QTLs detected for in vitro and greenhouse development of potato plants. Mol Breed 5: 417-428.
25. Swarup, K. B.C. Alonso, J.R. Lynn, S.D. Michaels, R.M. Amasino, M. Koornneef & A.J. Millar, 1999. Natural allelic variation identifies new genes in the Arabidopsis circadian system. Plant J 20: 67-77.
26. Taylor, B.A., D.W. Bailey, M. Cherry, R. Riblet & M. Weight. 1975 Genes for immunoglobulin heavy chain and serum prealbumin protein are linked in mouse. Nature 256: 644-646.
27. Wang, D.L., 1998. A Mixed Model Approach for Mapping QTLs with Epistatic Effects. A dissertation of Zhejiang Agricultural University, Hangzhou.
28. Wang, D., J. Zhu, Z.K. Li & A.H. Paterson, 1999. Mapping QTLs with epistatic effects and QTL-environment interactions by mixed linear model approaches. Theor Appl Genet 99: 1255-1264.
29. Weller, J.I., 1986. Maximum likelihood techniques for mapping and analysis of quantitative trait loci with the aid of genetic markers. Biometrics 42: 627-640.
30. Yan, J.Q., J. Zhu, C.X. He, M. Benmoussa, P. Wu. 1998. Quantitative trait loci analysis for the developmental behavior of tiller number in rice (Oryza sativa L.). Theor Appl Genet 97: 267-274.
31. Yin, X., P. Stam, C.J. Dourleijn, M.J. Kropff, 1999. AFLP mapping of quantitative trait loci for yield-determining physiological characters in spring barley. Theor Appl Genet 99: 244-253.
32. Zeng, Z.B., 1994. Precision mapping of quantitative trait loci. Genetics 136: 1456-1468.
33. Zhu, J., 1998. Mixed model approaches for mapping complex quantitative trait loci. In: L.W. Wang & J.R. Dai (Eds.), Proc. China Nat. Conf. on Plant Breeding, pp. 11-20. Agricultural Science and Technology Press of China, Beijing, China.
34. Zhu, J. & B.S. Weir, 1998. Mixed model approaches for genetic analysis of quatitative traits. In: L.S Chen, S.G. Ruan & J. Zhu (Eds.). Proc. Int. Conf. Mathematical Biology, pp. 321-330. World Scientific Publishing Co. Singapore.