A gene for a class II DNA photolyase from Oryza sativa: Cloning of the cDNA by dilution-amplification

Molecular Genetics and Genomics

Volumn 269, Issue 4, 2003, Pages 508-516

  Hirouchi, T ^a   Nakajima, S ^a   Najrana, T ^a   Tanaka, M ^a   Matsunaga, T ^b   Hidema, J ^a   Teranishi, M ^a   Fujino, T ^a   Kumagai, T ^a   Yamamoto, K ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b KANAZAWA UNIVERSITY   (Japan)

Author keywords

Alternative splicing; GC content; Oryza sativa; Photolyase; Solar UV radiation

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; DEOXYRIBODIPYRIMIDINE PHOTOLYASE; MESSENGER RNA; PLANT DNA; PLANT RNA;

ALTERNATIVE RNA SPLICING; ARTICLE; DILUTION; GC RICH SEQUENCE; GENE AMPLIFICATION; GENE ISOLATION; GENETIC SIMILARITY; MOLECULAR CLONING; PLANT CELL; PLANT GENETICS; POLYMERASE CHAIN REACTION; PREDICTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; RICE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; DNA REPAIR; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PYRIMIDINE DIMERS; SPECTROPHOTOMETRY;

ARABIDOPSIS; ARABIDOPSIS THALIANA; CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; CUCUMIS; CUCUMIS SATIVUS; EMBRYOPHYTA; ORYZA SATIVA;

EID: 0043124412     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-003-0856-9     Document Type: Article

References (39)

1. Ahmad M, Cashmore AR (1993) HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature 366:162-166
2. Ahmad M, Jarillo JA, Klimczak LJ, Landry LG, Peng T, Last RL, Cashmore AR (1997) An enzyme similar to animal type II photolyases mediates photoreactivation in Arabidopsis. Plant Cell 9:199-207
3. Britt AB (1995) Repair of DNA damage induced by ultraviolet radiation. Plant Physiol 108:891-896
4. Britt AB (1999) Molecular genetics of DNA repair in higher plants. Trends Plant Sci 4:20-25
5. Carels N, Hatey P, Jabbari K, Bernardi G (1998) Compositional properties of homologous coding sequences from plants. J Mol Evol 46:45-53
6. Goff SA, et al (2002) A draft sequence of the rice genome (Oryza sativa L.ssp. japonica). Science 296:92-100
7. Hidema J, Kang HS, Kumagai T (1996) Differences in the sensitivity to UVB radiation of two cultivars of rice (Oryza sativa L.). Plant Cell Physiol 37:742-747
8. Hidema J, Kumagai T, Sutherland JC, Sutherland BM (1997) Ultraviolet B-sensitive rice cultivar different in cyclobutyl pyrimidine dimer repair. Plant Physiol 113:39-44
9. Hidema J, Kumagai T, Sutherland BM (2000) UV-sensitive Norin 1 rice contains defective cyclobutane pyrimidine dimer photolyase. Plant Cell 12:1569-1578
10. Hidema J, Song IK, Sato T, Kumagai T (2001) Relationship between ultraviolet-B sensitivity and cyclobutane pyrimidine dimer photorepair in rice. J Radiat Res 42:295-303
11. Ihara M, Oda Y, Yamamoto K (1985) Convenient construction of a strain useful for transducing recA mutations with bacteriophage P1. FEMS Microbiol Lett 30:33-35
12. Jiang CZ, Yee J, Mitchell DL, Britt AB (1997) Photorepair mutants of Arabidopsis. Proc Natl Acad Sci 94:7441-7445
13. Kiyosawa K, Tanaka M, Matsunaga T, Nikaido O, Yamamoto K (2001) Amplified UvrA protein can ameliorate the ultraviolet sensitivity of an Escherichia coli recA mutant. Mutat Res 487:149-156
14. Kleiner O, Butenandt J, Carell T, Batschauer A (1999) Class II DNA photolyase from Arabidopsis thaliana contains FAD as a cofactor. Eur J Biochem 264:161-167
15. Krizek DT, Mirecki RM, Britz S (1997) Inhibitory effects of ambient levels of solar UV-A and UV-B radiation on growth of cucumber. Physiol Plant 100:886-893
16. Krizek DT, Britz S, Mirecki RM (1998) Inhibitory effects of solar UV-A and UV-B radiation on growth of cv. New Red Fire lettuce. Physiol Plant 103:1-7
17. Kumagai T, Hidema J, Kang HS, Sato T (2001) Effects of supplemental UV-B radiation on the growth and yield of two cultivars of Japanese lowland rice (Oryza sativa L.) under the field in a cool rice-growing region of Japan. Agric Ecosyst Environ 83:201-208
18. Landry LG, Stapleton AE, Lim J, Hoffman P, Hays JB, Walbot V, Last RL (1997) An Arabidopsis photolyase mutant is hypersensitive to ultraviolet-B radiation. Proc Natl Acad Sci USA 94:328-332
19. Lin C, Robertson DE, Ahmad M, Raibekas AA, Jorns MS, Dutton PL, Cashmore AR (1995) Association of flavin adenine dinucleotide with the Arabidopsis blue light receptor CRY1. Science 269:968-970
20. Malhotra K, Kim S-T, Batschauer A, Dawut L, Sancar A (1995) Putative blue-light photoreceptors from Arabidopsis thaliana and Sinapis alba with a high degree of sequence homology to DNA photolyase contain the two photolyase cofactors but lack DNA repair activity. Biochemistry 34:6892-6899.
21. Matassi G, Montero LM, Salinas J, Bernardi G (1989) The isochore organization and the compositional distribution of homologous coding sequences in the nuclear genome of plants. Nucleic Acids Res 17:5273-5290
22. Matsunaga T, Mori T, Nikaido O (1990) Base sequence specificity of a monoclonal antibody binding to (6-4)photoproducts. Murat Res 235:187-194
23. Mitchell DL, Nairn RS (1989) The biology of the (6-4) photoproduct. Photochem Photobiol 49:805-819
24. Nakajima S, Sugiyama M, Iwai S, Hitomi K, Otoshi E, Kim ST, Jiang CZ, Todo T, Britt AB, Yamamoto K (1998) Cloning and characterization of a gene (UVR3) required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. Nucleic Acids Res 26:638-644
25. Otoshi E, Yagi T, Mori T, Matsunaga T, Nikaido O, Kim ST, Hitomi K, Ikenaga M, Todo T (2000) Respective roles of cyclobutane pyrimidine dimers, (6-4) photoproducts, and minor photoproducts in ultraviolet mutagenesis of repair-deficient Xeroderma pigmentosum A cells. Cancer Res 60:1729-1735
26. Park HW, Kim ST, Sancar A, Deisenhofer J (1995) Crystal structure of DNA photolyase from Escherichia coli. Science 268:1866-1872
27. Petersen JL, Lang DW, Small GD (1999) Cloning and characterization of a class II DNA photolyase from Chlamydomonas. Plant Mol Biol 40:1063-1071
28. Sakamoto A, Tanaka A, Watanabe H, Tano S (1998) Molecular cloning of Arabidopsis photolyase gene (PHR1) and characterization of its promoter region. DNA Seq 9:335-340
29. Salinas J, Matassi G, Montero LM, Bernardi G (1988) Compositional compartmentalization and compositional patterns in the nuclear genomes of plants. Nucleic Acids Res 16:4269-4285
30. Sancar A (1994) Structure and function of DNA photolyase. Biochemistry 33:2-9
31. Takahashi S, Nakajima N, Saji H, Kondo N (2002) Diurnal change of cucumber CPD photolyase gene (CsPHR) expression and its physiological role in growth under UV-B irradiation. Plant Cell Physiol 43:342-349
32. Tanaka M, Nakajima S, Ihara M, Matsunaga T, Nikaido O, Yamamoto K (2001) Effects of photoreactivation of cyclobutane pyrimidine dimers and pyrimidine (6-4) pyrimidone photoproducts on ultraviolet mutagenesis in SOS-induced repair-deficient Escherichia coli. Mutagenesis 16:1-6
33. Teramura AH (1983) Effects of ultraviolet-B radiation on the growth and yield of crop plants. Physiol Plant 58:415-427
34. Todo T (1999) Functional diversity of the DNA photolyase/blue light receptor family. Mutat Res 434:89-97
35. Todo T, Takemori H, Ryo H, Ihara M, Matsunaga T, Nikaido O, Sato K, Nomura T (1993) A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4) photoproducts. Nature 361:371-374
36. Todo T, Ryo H, Yamamoto K, Toh H, Inui T, Ayaki H, Nomura T, Ikenaga M (1996) Similarity among the Drosophila (6-4) photolyase, a human photolyase homolog, and the DNA photolyase-blue-light photoreceptor family. Science 272:109-112
37. Todo T, Kim ST, Hitomi K, Otoshi E, Inui T, Morioka H, Kobayashi H, Ohtsuka E, Toh H, Ikenaga M (1997) Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4) photolyase. Nucleic Acids Res 25:764-768
38. Yamamoto K (1985) Photoreactivation reverses ultraviolet radiation premutagenic lesions leading to frameshift mutations in Escherichia coli. Mol Gen Genet 201:141-145
39. Yasui A, Eker AP, Yasuhira S, Yajima H, Kobayashi T, Takao M, Oikawa A (1994) A new class of DNA photolyases present in various organisms including aplacental mammals. EMBO J 13:6143-6151