Comparison of the ELP and multicanonical methods in simulation of the heptapeptide deltorphin

European Physical Journal B

Volumn 30, Issue 4, 2002, Pages 577-580

  Arkin, H ^a   Celik T ^a  

^a HACETTEPE UNIVERSITY   (Turkey)

Author keywords

02.70. c Computational techniques; 05.50.+q Lattice theory and statistics (Ising, Potts, etc.) ; 82.20.Wt Computational modeling; simulation

Indexed keywords

EID: 0042904453     PISSN: 14346028     EISSN: None     Source Type: Journal    
DOI: 10.1140/epjb/e2002-00416-2     Document Type: Article

References (24)

1. B.A. Berg, Fields Insti. Commun. 26, 1 (2000)
2. U.H.E. Hansmann, Y. Okamoto, Ann. Rev. Comp. Physics 5, 129 (1999)
3. A. Mitsutake, Y. Sugita, Y. Okamoto, Biopolymers (Peptide Science) 60, 96 (2001)
4. U.H.E. Hansmann, Y. Okamoto, J. Comput. Chem. 14, 1333 (1993)
5. M.-H. Hao, H.A. Scheraga, J. Phys. Chem. 98, 4940 (1994); J. Phys. Chem. 98, 9882 (1994); A. Kolinski, W. Galazka, Skolnick, J. Proteins 26, 271 (1996); J. Higo, N. Nakajima, H. Shirai, A. Kidera, H. Nakamura, J. Comput. Chem. 18, 2086 (1997)
6. M.-H. Hao, H.A. Scheraga, J. Phys. Chem. 98, 4940 (1994); J. Phys. Chem. 98, 9882 (1994); A. Kolinski, W. Galazka, Skolnick, J. Proteins 26, 271 (1996); J. Higo, N. Nakajima, H. Shirai, A. Kidera, H. Nakamura, J. Comput. Chem. 18, 2086 (1997)
7. M.-H. Hao, H.A. Scheraga, J. Phys. Chem. 98, 4940 (1994); J. Phys. Chem. 98, 9882 (1994); A. Kolinski, W. Galazka, Skolnick, J. Proteins 26, 271 (1996); J. Higo, N. Nakajima, H. Shirai, A. Kidera, H. Nakamura, J. Comput. Chem. 18, 2086 (1997)
8. M.-H. Hao, H.A. Scheraga, J. Phys. Chem. 98, 4940 (1994); J. Phys. Chem. 98, 9882 (1994); A. Kolinski, W. Galazka, Skolnick, J. Proteins 26, 271 (1996); J. Higo, N. Nakajima, H. Shirai, A. Kidera, H. Nakamura, J. Comput. Chem. 18, 2086 (1997)
9. U.H.E. Hansmann, L.T. Wille, Phys. Rev. Lett. 88, 068105 (2002)
10. H.P. Hsu, S.C. Lin, U.H.E. Hansmann, Acta Cryst. A 58, 259 (2002)
11. F. Yaşar, H. Arkin, T. Çelik, B.A. Berg, H. Meirovitch, J. Comput. Chem. 23 (12) 1127 (2002)
12. (a) P.A. Temussi, D. Picone, T. Tancredi, R. Tomatis, S. Salvadori, M. Marastoni, G. Balboni, FEBS Lett. 247, 283 (1989).
13. (b) T. Tancredi, P.A. Temussi, D. Picone, P. Amodeo, R. Tomatis, S. Salvadori, M. Marastoni, V. Santagada, G. Balboni, Biopolymers 31, 751 (1991)
14. (a) G.V. Nikiforovich, V.J. Hruby, J. Biochim. Biophys. Res. Commun. 173, 521 (1990);
15. (b) G.V. Nikiforovich, V.J. Hruby, O. Prakash, C.A. Gehrig, Biopolymers 31, 941 (1991).
16. (c) G.V. Nikiforovich, O. Prakash, C.A. Gehrig, V.J. Hruby, J. Am. Chem. Soc. 115, 3399 (1993)
17. F.A. Momany, R.F. McGuire, A.W. Burgess, H.A. Scheraga, J. Phys. Chem. 79, 2361 (1975); M.J. Sippl, G. Némethy, H.A. Scheraga, J. Phys. Chem. 88, 6231 (1984)
18. F.A. Momany, R.F. McGuire, A.W. Burgess, H.A. Scheraga, J. Phys. Chem. 79, 2361 (1975); M.J. Sippl, G. Némethy, H.A. Scheraga, J. Phys. Chem. 88, 6231 (1984)
19. (a) B. von Freyberg, T. Schaumann, W. Braun, FANTOM User's Manual and Instructions (ETH Zürich, Zürich, 1993).
20. (b) B. von Freyberg, W. Braun, J. Comput. Chem. 14, 510 (1993)
21. (a) Z. Li, H.A. Scheraga, Proc. natl. Acad. Sci. USA 84, 6611 (1987);
22. (b) J. Mol. Struct. (Thechem.) 179, 333 (1988)
23. (a) H. Meirovitch, E. Meirovitch, J. Lee, J. Phys. Chem. 99, 4847 (1995);
24. (b) H. Meirovitch, E. Meirovitch, Biopolymers 38, 69 (1996)