SCOPUS 정보 검색 플랫폼

Volumn 23, Issue 12, 2002, Pages 1127-1134

Efficiency of the multicanonical simulation method as applied to peptides of increasing size: The heptapeptide deltorphin

(5) Yaşar, Fatih a Arkin, Handan a Çelik, Tarik a Berg, Bernd A b Meirovitch, Hagai c,d

a HACETTEPE UNIVERSITY (Turkey)

b Florida State University (United States)

c FLORIDA STATE UNIVERSITY (United States)

d UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE (United States)

Author keywords

Deltorphin; Energy minimization; Metropolis Monte Carlo; Multicanonical simulation; Peptides; Proteins; Thermodynamic averages

Indexed keywords

COMPUTER SIMULATION; CONFORMATIONS; FREE ENERGY; FUNCTIONS; MOLECULAR DYNAMICS; MOLECULES; MONTE CARLO METHODS; POTENTIAL ENERGY; SPECIFIC HEAT; STATISTICAL MECHANICS; VACUUM;

ENERGY BARRIERS; HEPTAPEPTIDE DELTORPHIN; MULTICANONICAL SIMULATION METHOD; PEPTIDES; POTENTIAL ENERGY FUNCTION;

POLYPEPTIDES;

DELTORPHIN; LEUCINE ENKEPHALIN; OLIGOPEPTIDE; PEPTIDE;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; CONFORMATION; MONTE CARLO METHOD; TEMPERATURE; TIME;

AMINO ACID SEQUENCE; COMPUTER SIMULATION; ENKEPHALIN, LEUCINE; MODELS, CHEMICAL; MOLECULAR CONFORMATION; MONTE CARLO METHOD; OLIGOPEPTIDES; PEPTIDES; TEMPERATURE; TIME FACTORS;

EID: 0036707612 PISSN: 01928651 EISSN: None Source Type: Journal
DOI: 10.1002/jcc.10113 Document Type: Article

Times cited : (18)

References (69)

1
- 0001290941
- (1994) Chem Rev , vol.94 , pp. 2183
- Vásquez, M.¹ Némethy, G.² Scheraga, H.A.³

2
- 0030102542
- (1996) J Phys Chem , vol.100 , pp. 5123
- Meirovitch, H.¹ Meirovitch, E.²

3
- 0033198024
- (1999) Biopolymers , vol.50 , pp. 329
- Baysal, C.¹ Meirovitch, H.²

4
- 0000133380
- (1957) J Chem Phys , vol.27 , pp. 1209
- Alder, B.J.¹ Wainwright, T.E.²

5
- 0017776823
- (1977) Nature , vol.267 , pp. 585
- McCammon, J.A.¹ Gelin, B.R.² Karplus, M.³

6
- 0042091834
- (1984) Science , vol.225 , pp. 983
- Stillinger, F.H.¹ Weber, T.A.²

7
- 0023140044
- (1987) Science , vol.235 , pp. 318
- Elber, R.¹ Karplus, M.²

8
- 5744249209
- (1953) J Chem Phys , vol.21 , pp. 1087
- Metropolis, N.¹ Rosenbluth, A.W.² Rosenbluth, M.N.³ Teller, A.H.⁴ Teller, E.⁵

9
- 51149216498
- (1969) J Chem Phys , vol.51 , pp. 4751
- Gõ, N.¹ Scheraga, H.A.²

10
- 0000717285
- (1969) Physiol Chem Phys , vol.1 , pp. 109
- Gibson, K.D.¹ Scheraga, H.A.²

11
- 18344362394
- (1976) Macromolecules , vol.9 , pp. 535
- Gõ, N.¹ Scheraga, H.A.²

12
- 0001182617
- (1979) J Am Chem Soc , vol.101 , pp. 6842
- Hagler, A.T.¹ Stern, P.S.² Sharon, R.³ Becker, J.M.⁴ Naider, F.⁵

13
- 0000127140
- (1981) Macromolecules , vol.14 , pp. 325
- Karplus, M.¹ Kushick, J.N.²

14
- 0028331255
- (1994) Curr Opin Struct Biol , vol.4 , pp. 285
- Case, D.A.¹

15
- 0001598816
- (1977) Chem Phys Lett , vol.21 , pp. 389
- Meirovitch, H.¹

16
- 0023338860
- (1987) Biopolymers , vol.26 , pp. 651
- Meirovitch, H.¹ Vásquez, M.² Scheraga, H.A.³

17
- 0028166871
- (1994) Biopolymers , vol.34 , pp. 815
- Meirovitch, H.¹ Koerber, S.C.² Rivier, J.³ Hagler, A.T.⁴

18
- 11744387198
- (1987) J Am Chem Soc , vol.109 , pp. 3150
- Saunders, M.¹

19
- 84986519245
- (1991) J Comput Chem , vol.12 , pp. 645
- Saunders, M.¹

20
- 0024834696
- (1989) J Am Chem Soc , vol.111 , pp. 8950
- Gotõ, H.¹ Õsawa, E.²

21
- 0026586450
- (1992) Tetrahedron Lett , vol.33 , pp. 1343
- Gotõ, H.¹ Õsawa, E.²

22
- 0043162336
- (1989) J Am Chem Soc , vol.111 , pp. 4379
- Chang, G.¹ Guida, W.C.² Still, W.C.³

23
- 0007793280
- (1990) J Am Chem Soc , vol.112 , pp. 1419
- Saunders, M.¹ Houk, K.N.² Wu, Y.-D.³ Still, W.C.⁴ Lipton, M.⁵ Chang, G.⁶ Guida, W.C.⁷

24
- 0023433915
- (1987) Biopolymers , vol.26 , pp. 1691
- Braun, W.¹

25
- 84986469504
- (1991) J Comput Chem , vol.12 , pp. 1110
- Goodman, J.M.¹ Still, W.C.²

26
- 0142236572
- (1996) J Am Chem Soc , vol.118 , pp. 5011
- Kollosváry, I.¹ Guida, W.C.²

27
- 0032481422
- (1998) J Am Chem Soc , vol.120 , pp. 800
- Baysal, C.¹ Meirovitch, H.²

28
- 0009896450
- (1986) J Mol Struct (Theochem) , vol.137 , pp. 129
- Betins, J.¹ Nikiforovich, G.V.² Chipens, G.³

29
- 0000114713
- (1988) J Am Chem Soc , vol.110 , pp. 3393
- Kessler, H.¹ Griesinger, C.² Lautz, J.³ Muller, A.⁴ Van Gunsteren, W.F.⁵ Berendsen, H.J.C.⁶

30
- 0026159294
- (1991) J Biomol NMR , vol.1 , pp. 3
- Brüschweiler, R.¹ Blackledge, M.² Ernst, R.R.³

31
- 0028793933
- (1995) J Am Chem Soc , vol.117 , pp. 1027
- Cicero, D.O.¹ Barbato, G.² Bazzo, R.³

32
- 0000106469
- (1991) Phys Lett B , vol.267 , pp. 249
- Berg, B.A.¹ Neuhaus, T.²

33
- 0001629677
- (1992) Phys Rev Lett , vol.69 , pp. 2292
- Berg, B.A.¹ Çelik, T.²

34
- 0001885966
- cond-mat/9909236
- (2000) Fields Inst Commun , vol.28 , pp. 1
- Berg, B.A.¹

35
- 5244260010
- (1993) J Comput Chem , vol.14 , pp. 1333
- Hansmann, U.H.¹ Okamoto, Y.²

36
- 0000515198
- (1994) J Phys Chem , vol.98 , pp. 4940
- Hao, M.-H.¹ Scheraga, H.A.²

37
- 33751158061
- (1994) J Phys Chem , vol.98 , pp. 9882
- Hao, M.-H.¹ Scheraga, H.A.²

38
- 0029809182
- (1996) Proteins , vol.26 , pp. 271
- Kolinski, A.¹ Galazka, W.² Skolnick, J.³

39
- 0001738980
- (1997) J Comput Chem , vol.18 , pp. 2086
- Higo, J.¹ Nakajima, N.² Shirai, H.³ Kidera, A.⁴ Nakamura, H.⁵

40
- 0000619629
- (1999) Annu Rev Comp Phys , vol.5 , pp. 129
- Hansmann, U.H.¹ Okamoto, Y.²

41
- 0034864528
- (2001) Biopolymers (Peptide Sci) , vol.60 , pp. 96
- Mitsutake, A.¹ Sugita, Y.² Okamoto, Y.³

42
- 25044479521
- (1988) Phys Rev Lett , vol.61-63
- Ferrenberg, A.M.¹ Swendsen, R.H.²

43
- 0030549332
- (1996) J Stat Phys , vol.82 , pp. 323
- Berg, B.A.¹

44
- 0032043566
- (1998) Nucl Phys B (Proc Suppl) , vol.63 A-C , pp. 982
- Berg, B.A.¹

45
- 0002252462
- (1999) Chem Phys Lett , vol.309 , pp. 95
- Mitsutake, A.¹ Okamoto, Y.²

46
- 0000464214
- (2000) J Comput Chem , vol.21 , pp. 1251-1261
- Yasar, F.¹ Çelik, T.² Berg, B.A.³ Meirovitch, H.⁴

47
- 5944250450
- (1975) J Phys Chem , vol.79 , pp. 2361
- Momany, F.A.¹ McGuire, R.F.² Burgess, A.W.³ Scheraga, H.A.⁴

48
- 27244454740
- (1984) J Phys Chem , vol.88 , pp. 6231
- Sippl, M.J.¹ Némethy, G.² Scheraga, H.A.³

49
- 0023430366
- (1987) Proc Natl Acad Sci USA , vol.84 , pp. 6611
- Li, Z.¹ Scheraga, H.A.²

50
- 0342270249
- (1997) J Phys Chem B , vol.101 , pp. 3304
- Eisenmenger, F.¹ Hansmann, U.H.E.²

51
- 0033104745
- (1999) Protein Struct Funct Genet , vol.34 , pp. 472
- Hansmann, U.H.E.¹ Okamoto, Y.² Onuchic, J.N.³

52
- 0035878659
- (2001) J Chem Phys , vol.115 , pp. 1601
- Hansmann, U.H.E.¹ Onuchic, J.N.²

53
- 0001075603
- (1999) J Chem Phys , vol.110 , pp. 1267
- Hansmann, U.H.E.¹ Okamoto, Y.²

54
- 0034695791
- (2000) Phys Rev Lett , vol.84 , pp. 1836
- Alves, N.¹ Hansmann, U.H.E.²

55
- 0347756725
- (1999) J Phys Chem B , vol.103 , pp. 1595
- Hansmann, U.H.E.¹ Okamoto, Y.²

56
- 0024554256
- (1989) FEBS Lett , vol.247 , pp. 283
- Temussi, P.A.¹ Picone, D.² Tancredi, T.³ Tomatis, R.⁴ Salvadori, S.⁵ Marastoni, M.⁶ Balboni, G.⁷

57
- 0026155519
- (1991) Biopolymers , vol.31 , pp. 751
- Tancredi, T.¹ Temussi, P.A.² Picone, D.³ Amodeo, P.⁴ Tomatis, R.⁵ Salvadori, S.⁶ Marastoni, M.⁷ Santagada, V.⁸ Balboni, G.⁹

58
- 0025603019
- (1990) J Biochim Biophys Res Commun , vol.173 , pp. 521
- Nikiforovich, G.V.¹ Hruby, V.J.²

59
- 0026191334
- (1991) Biopolymers , vol.31 , pp. 941
- Nikiforovich, G.V.¹ Hruby, V.J.² Prakash, O.³ Gehrig, C.A.⁴

60
- 0027266891
- (1993) J Am Chem Soc , vol.115 , pp. 3399
- Nikiforovich, G.V.¹ Prakash, O.² Gehrig, C.A.³ Hruby, V.J.⁴

61
- 0009924160
- ETH Zürich: Zürich
- (1993) FANTOM User's Manual and Instructions
- Von Freyberg, B.¹ Schaumann, T.² Braun, W.³

62
- 84912130774
- (1993) J Comput Chem , vol.14 , pp. 510
- Von Freyberg, B.¹ Braun, W.²

63
- 0009899665
- (1989) Phys Rev A , vol.15 , pp. 4186
- Meirovitch, H.¹ Lim, H.A.²

64
- 0009948743
- (1990) Phys Rev A , vol.15 , pp. 1808
- Chang, I.S.¹ Meirovitch, H.² Shapir, Y.³

65
- 0001351693
- (1996) Phys Rev Lett , vol.77 , pp. 2822
- Zhou, Y.¹ Hall, C.K.² Karplus, M.³

66
- 0001738398
- (1998) Phys Rev Lett , vol.81 , pp. 3880
- Kemp, J.P.¹ Chen, Z.Y.²

67
- 0033198024
- and references given therein
- (1999) Biopolymers , vol.50 , pp. 329
- Baysal, C.¹ Meirovitch, H.²

68
- 84986486657
- (1991) J Comput Chem , vol.12 , pp. 1065
- Freyberg, B.V.¹ Braun, W.²

69
- 0001563695
- (1988) J Chem Phys , vol.89 , pp. 2514
- Meirovitch, H.¹

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.