Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus

Journal of Biological Chemistry

Volumn 278, Issue 34, 2003, Pages 32397-32404

  Ishii, Ryohei ^a   Nureki, Osamu ^a,b,c,d   Yokoyama, Shigeyuki ^a,b,c  

^a UNIVERSITY OF TOKYO   (Japan)

^b RIKEN YOKOHAMA INSTITUTE   (Japan)

^c RIKEN HARIMA INSTITUTE   (Japan)

^d JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CATALYST ACTIVITY; CRYSTAL STRUCTURE; PH EFFECTS; PHOSPHATES; RNA;

NUCLEOTIDES;

ENZYMES;

ARGININE; EXORIBONUCLEASE; GLYCINE; PHOSPHATE; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RIBONUCLEASE; RIBONUCLEASE PH; RNA PRECURSOR; THREONINE; TRANSFER RNA; UNCLASSIFIED DRUG;

AQUIFEX AEOLICUS; ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; ENZYME BINDING; ENZYME STRUCTURE; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; BACTERIA; CLONING, MOLECULAR; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; EXORIBONUCLEASES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

AQUIFEX AEOLICUS;

EID: 0042858117     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M300639200     Document Type: Article

References (34)

1. Deutscher, M. P. (1984) CRC Crit. Rev. Biochem. 17, 45-71
2. Deutscher, M. P. (1995) in tRNA: Structure, Biosynthesis, and Function (Soll, D., and RajBhandary, U. L., eds) pp. 51-65, American Society for Microbiology, Washington, D. C.
3. Morl, M., and Marchfelder, A. (2001) EMBO Rep. 2, 17-20
4. Schurer, H., Schiffer, S., Marchfelder, A., and Morl, M. (2001) Biol. Chem. 382, 1147-1156
5. Frank, D. N., and Pace, N. R. (1998) Annu. Rev. Biochem. 67, 153-180
6. Schierling, K., Rosch, S., Rupprecht, R., Schiffer, S., and Marchfelder, A. (2002) J. Mol. Biol. 316, 895-902
7. Schiffer, S., Rosch, S., and Marchfelder, A. (2002) EMBO J. 21, 2769-2777
8. Li, Z., and Deutscher, M. P. (1996) Cell 86, 503-512
9. Deutscher, M. P., Marshall, G. T., and Cudny, H. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 4710-4714
10. Kelly, K. O., and Deutscher, M. P. (1992) J. Biol. Chem. 267, 17153-17158
11. Ost, K. A., and Deutscher, M. P. (1990) Biochimie (Paris) 72, 813-818
12. Li, Z., Pandit, S., and Deutscher, M. P. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 2856-2861
13. Mian, I. S. (1997) Nucleic Acids Res. 25, 3187-3195
14. Zuo, Y., and Deutscher, M. P. (2001) Nucleic Acids Res. 29, 1017-1026
15. Koonin, E. V., Wolf, Y. I., and Aravind, L. (2001) Genome Res. 11, 240-252
16. Butler, J. S. (2002) Trends Cell Biol. 12, 90-96
17. Symmons, M. F., Jones, G. H., and Luisi, B. F. (2000) Structure Fold. Des. 8, 1215-1226
18. Donovan, W. P., and Kushner, S. R. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 120-124
19. Coburn, G. A., and Mackie, G. A. (1999) Prog. Nucleic Acids Res. Mol. Biol. 62, 55-108
20. Carpousis, A. J., Van Houwe, G., Ehretsmann, C., and Krisch, H. M. (1994) Cell 76, 889-900
21. Py, B., Causton, H., Mudd, E. A., and Higgins, C. F. (1994) Mol. Microbiol. 14, 717-729
22. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
23. Weeks, C. M., and Miller, R. (1999) J. Appl. Crystallogr. 32, 120-124
24. de La Fortelle, E., and Bricogne, G. (1997) Methods Enzymol. 276, 472-494
25. Terwilliger, T. C. (2000) Acta Crystallogr. Sect. D Biol. Crystallogr. 56, 965-972
26. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, (1991) Acta Crystallogr. Sect. A. 47, 110-119
27. Adams, P. D., Pannu, N. S., Read, R. J., and Brunger, A. T. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 5018-5023
28. Vagin, A., and Teplyakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
29. Holm, L., and Sander, C. G. (1998) Nucleic Acids Res. 26, 316-319
30. Zhou, T., Daugherty, M., Grishin, N. V., Osterman, A. L., and Zhang, H. (2000) Structure Fold. Des. 8, 1247-1257
31. Ramakrishnan, V., and White, S. W. (1992) Nature 358, 768-771
32. Murzin, A. G., Brenner, S. E., Hubbard, T., and Chothia, C. (1995) J. Mol. Biol. 247, 536-540
33. Jarrige, A., Brechemier-Baey, D., Mathy, N., Duche, O., and Portier, C. (2002) J. Mol. Biol. 321, 397-409
34. Shi, H., and Moore, P. B. (2000) RNA (New York) 6, 1091-1105