Subcortical, cerebellar, and magnetic resonance based consistent brain image registration

NeuroImage

Volumn 19, Issue 2, 2003, Pages 233-245

  Magnotta, Vincent A ^a   Bockholt, H Jeremy ^b   Johnson, Hans J ^a   Christensen, Gary E ^c   Andreasen, Nancy C ^a,b,d  

^a UNIVERSITY OF IOWA   (United States)

^b MIND RESEARCH NETWORK   (United States)

^c IA United States   (United States)

^d UNIVERSITY OF NEW MEXICO   (United States)

Author keywords

Correspondence; Deformable templates; Image registration; Inverse transformation; Landmark registration

Indexed keywords

ADULT; ALGORITHM; ARTICLE; ARTIFICIAL NEURAL NETWORK; BRAIN CORTEX; BRAIN SIZE; CEREBELLUM; DISCRIMINANT ANALYSIS; HUMAN; HUMAN EXPERIMENT; IMAGE ANALYSIS; INFORMATION PROCESSING; MALE; NEUROIMAGING; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; SIGNAL PROCESSING; VALIDATION PROCESS; VOLUMETRY; BRAIN MAPPING; CAUDATE NUCLEUS; HISTOLOGY; IMAGE ENHANCEMENT; IMAGE PROCESSING; METHODOLOGY; PUTAMEN; STATISTICAL MODEL; THALAMUS; THREE DIMENSIONAL IMAGING;

ADULT; ALGORITHMS; BRAIN MAPPING; CAUDATE NUCLEUS; CEREBELLUM; CEREBRAL CORTEX; HUMANS; IMAGE ENHANCEMENT; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; LINEAR MODELS; MAGNETIC RESONANCE IMAGING; MALE; NEURAL NETWORKS (COMPUTER); PUTAMEN; THALAMUS;

EID: 0042739030     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1053-8119(03)00100-9     Document Type: Article

References (62)

1. Andreasen, N., O'Leary, D., Cizadlo, T., Arndt, S., Rezai, K., Watkins, G., Ponto, L., Hichwa, R., 1995. II. PET studies of memory: novel versus practiced free recall of word lists. NeuroImage 2 (4), 296-305.
2. Andreasen, N., Cizadlo, T., Harris, G., Cizadlo, T., 1993. Voxel processing techniques for the antemortem study of neuroanatomy and neuropathology using magnetic resonance imaging. J. Neuropsychiatry Clin. Neurosci. 5, 121-130.
3. Andreasen, N., Cohen, G., Harris, G., Cizadlo, T., 1992a. Image processing for the study of brain structure and function: problems and programs. J. Neuropsychiatry Clin. Neurosci. 4, 125-133.
4. Andreasen, N., Rezai, K., Alliger, R., 1992b. Hypofrontality in neuroleptic-naive patients and in patients with chronic schizophrenia, assessment with xenon 133 single-photon emission computed tomography and the tower of London. Arch. Gen. Psychiatry 49 (12), 943-958.
5. 2O PET cognitive activation studies. J. Neuropsychiatry 7, 155-168.
6. Ashburner, J., Andersson, J., Friston, K., 1999. High-dimensional image registration using symmetric priors. NeuroImage 9, 619-628.
7. Bohm, C., Greitz, T., Kingsliey, D., Berggren, B., Olsson, L., 1983. Adjustable computerized stereotaxic brain atlas for transmission and emission tomography. Am. J. Neuroradiol. 4, 731-733.
8. Bookstein, F., 1978. The Measurement of Biological Shape and Shape Change. Lecture Notes in Biomathematics, Vol. 24. Springer-Verlag, New York.
9. Bookstein, F., 1991. Morphometric Tools for Landmark Data. Cambridge Univ. Press, New York.
10. Bookstein, F., 1999. Linear methods for nonlinear maps: procrustes fits, thin-plate splines, and the biometric analysis of shape variability, in: Toga, A. (Ed.), Brain Warping. Academic Press, SanDiego, pp. 157-181.
11. Christensen, G., 1999. Consistent linear-elastic transformations for image matching, in: Kuba, A., Samal, M. (Eds.), Information Processing in Medical Imaging, LCNS 1613. Springer-Verlag, New York, pp. 224-237.
12. Christensen, G., Carlson, B., Chao, K., Yen, P., Grigsby, P., Nguyen, K., Dempsey, J., Lerma, F., Bae, K., Vannier, M., Williamson, J., 2001. Imagebased dose planning of intracavitary brachytherapy: registration of serial imaging studies using deformable anatomic templates. Int. J. Radiat. Oncol. Biol. Phys. 51 (1), 227-243.
13. Christensen, G., Johnson, H., 2001. Consistent image registration. IEEETrans. Med. Imaging 20 (7), 568-582.
14. Christensen, G., Joshi, S., Miller, M., 1997. Volumetric transformation of brain anatomy. IEEE Trans. Med. Imaging 16 (6), 864-877.
15. Christensen, G., Rabbitt, R., Miller, M., 1996. Deformable templates using large deformation kinematics. IEEE Trans. Image Process. 5 (10), 1435-1447.
16. Crespo-Facorro, B., Kim, J., Andreasen, N., 1999. Human frontal cortex: an MRI-based parcellation method. NeuroImage 10, 500-519.
17. Crespo-Facorro, B., Kim, J., Andreasen, N., 2000. Cerebral cortex: a topographic segmentation method using magnetic resonance imaging. Psychiatry Res. Neuroimaging 100, 97-126.
18. Davatzikos, C., 1997. Spatial transformation and registration of brain images using elastically deformable models. Comput. Vis. Image Understanding 66 (2), 207-222.
19. Davatzikos, C., Prince, J., Bryan, R., 1996. Image registration based on boundary mapping. IEEE Trans. Med. Imaging 15 (1), 112-115.
20. Dawant, B., Hartmann, S., Thirion, J., Maes, F., Vandermeulen, D., Demaerel, P., 1999. Automatic 3-D segmentation of internal structures of the head in MR images using a combination of similarity and free-form transformations: Part i, methodology and validation on normal subjects. IEEE Trans. Med. Imaging 18, 909-916.
21. Dice, L., 1945. Measures of the amount of ecologic association between species. Ecology 26, 297-302.
22. Essen, D.V., Drury, H., Joshi, S., Miller, M., 1998. Functional and structural mapping of human cerebral cortex: solutions are in the surfaces. Proc. Natl. Acad. Sci. USA 95 (4), 788-795.
23. Evans, A., Beil, C., Marret, S., Thompson, C., Hakim, A., 1988. Anatomical-functional correlation using an adjustable MRI-based region of interest atlas with positron emission tomography. J. Cereb. Blood Flow Metab. 8, 513-530.
24. Evans, A., Marrett, S., Torrescorzo, J., Ku, S., Collins, E., 1991. MRI-PET correlation in three dimensions using a volume-of-interest (VOI) atlas. J. Cereb. Blood Flow Metab. 11, A69-A78.
25. Fischl, B., Sereno, M., Tootell, R., Dale, A., 1999. High-resolution intersubject averaging and a coordinate system for the cortical surface. Hum. Brain Mapping 8 (4), 272-284.
26. Fox, P., 1991. Physiological ROI definition by image subtracton. J. Cereb. Blood Flow Metab. 11, A79-A82.
27. Fox, P., Perlmutter, J., Raichle, M., 1985. A stereotactic method of anatomical localization for positron emission tomography. J. Comput. Assist. Tomog. 9, 141-153.
28. Friston, K., amd Nutt, J.G. Heather, R.P., J., amd Frackowiak, R.S., G.S., 1989. Localisation in PET images: direct fitting of the intercommissural (AC-PC) line. J. Cereb. Blood Flow Metab. 9, 690-695.
29. Friston, K., Frith, C., Liddle, P., Frakowiak, R., 1991. Comparing functional (PET) images: the assessment of significant change. J. Cereb. Blood Flow Metab. 11, 690-699.
30. Harris, G., Andreasen, N., Cizadlo, T., Bailey, J., Bockholt, H., Magnotta, V., Arndt, S., 1999. Improving tissue classification in MRI: a three-dimensional multispectral discriminant analysis methods with automated training class selection. J. Comput. Assist. Tomogr. 23 (1), 144-154.
31. Hellier, P., Barillot, C., 2001. Cooperation between local and global approaches to register brain images, in: Information Processing in Medical Imaging. Springer-Verlag, New York, pp. 315-328.
32. Johnson, H., Christensen, G., 2001a. Consistent landmark and intensity-based image registration. IEEE Trans. Med. Imaging 21(5), 450-461.
33. Johnson, H., Christensen, G., June 2001b. Landmark and intensity-based, consistent thin-plate spline image registration. In: Issana, M., Leahy, R. (Eds.), Information Processing in Medical Imaging, LCNS 2082. Springer-Verlag, New York, pp. 329-343.
34. Joshi, S., 1997. Large deformation diffeomorphisms and Gaussian random fields for statistical characterization of brain sub-manifolds. D.Sc. Dissertation, Department of Electrical Engineering, Sever Institute of Technology, Washington University, St. Louis, MO.
35. Kim, J., Crespo-Facorro, B., Andreasen, N., 2000. An MRI-based parcellation method for the temporal lobe. NeuroImage 11, 271-288.
36. Kochunov, P., Lancaster, J., Fox, P., 1999. 1999. Accurate high speed spatial normalization using an octree method. NeuroImage 10, 724-737.
37. Kochunov, P., Lancaster, J., Thompson, P., Boyer, A., Hardies, J., Fox, P., 2000. Evaluation of octree regional spatial normalization method for regional anatomical matching. Hum. Brain Mapping 11, 1193-206.
38. Kybic, J., 2001. Elastic image registration using parametric deformation models. Ph.D. Thesis, Swiss Federal Institute of Technology Lausanne, EPFL, Lausanne, Switzerland.
39. Low, M., Sorenson, J., 1997. Spatially filtering functional magnetic resonance imaging data. Magn. Resoson. Med. 37, 723-729.
40. Magnotta, V., Andreasen, N., Shultz, S., Harris, G., Cizadlo, T., Heckel, D., Nopoulos, P., Flaum, M., March 1999a. Quantitative in vivo measurement of gyrification in the human brain: changes associated with aging. Cereb. Cortex 9, 151-160.
41. Magnotta, V., Harris, G., Andreasen, N., Yuh, W., Heckel, D., 2002. Structural MR image processing using the BRAINS2 toolbox. Comput. Med. Imaging Graph. 26, 251-264.
42. Magnotta, V., Heckel, D., Andreasen, N., Cizadlo, T., Corson, P., Ehrhardt, J., Yuh, W., 1999b. Measurement of brain structures with artificial neural networks: two- and three-dimensional applications. Radiology 211, 781-790.
43. Miller, M., Christensen, G., Amit, Y., Grenander, U., 1993. Mathematical textbook of deformable neuroanatomies. Proc. Nat. Acad. Sci. USA 90 (24), 11944-11948.
44. Pelizzari, C., Chen, G., Spelbring, D., Weichselbaum, R., Chen, C., 1989. Accurate three-dimensional registration of CT, PET, and/or MR images of the brain. J. Comput. Assist. Tomogr. 13 (1), 20-26.
45. Pierson, R., Corson, P., Sears, L., Alicata, D., Magnotta, V., Andreasen, N., 2002. Measurement of cerebellar subregions on MR images. NeuroImage 17, 61-76.
46. Poline, J., Mazoyer, B., 1994. Enhanced detection in brain activation maps using a multifiltering approach. J. Cereb. Blood Flow Metab. 14, 639-642.
47. Rohr, K., Fornefett, M., Stiehl, H., 1999. Approximating thin-plate splines for elastic registration: integration of landmark errors and orientation attributes, in: Kuba, A., Samal, M. (Eds.), Information Processing in Medical Imaging, LCNS 1613. Springer-Verlag, New York, pp. 252-265.
48. Rueckert, D., Sonoda, L., Hayes, C., Hill, D., Leach, M., Hawkes, D., 1999. Nonrigid registration using free-form deformations: application to breast MR images. IEEE Trans. Med. Imaging 18, 712-721.
49. Shattuck, D., Sandor-Leahy, S., Schaper, K., Rottenberg, D., Leahy, R., 2001. Magnetic resonance image tissue classification using a partial volume model. NeuroImage 13, 856-876.
50. Spinks, R., Magnotta, V., Andreasen, N., Albright, K.C., Nopoulos, S.Z., P. Cassel, M., 2002. Manual and automated measurement of the whole thalamus and mediadorsal nucleus using MRI. NeuroImage 17, 631-642.
51. Steinmetz, H., Furst, G., Freund, H., 1990. Proportional localization system for anatomical interpretation of cerebral computed tomograms. Am. J. Neuroradiol. 11 (6), 1123-1130.
52. Subsol, G., 1999. Crest lines for curve-based warping, in: Toga, A. (Ed.), Brain Warping. Academic Press, San Diego, pp. 241-262.
53. Talairach, J., Szikla, G., Tournoux, P., 1967. d'Atatomie Stereotaxique du Telecephale. Masson, Paris, France.
54. Talairach, J., Tournoux, P., 1988. Co-Planar Stereotactic Atlas of the Human Brain. Beorg Thieme Verlag, Stuttgart.
55. Thirion, J., 1998a. Image matching as a diffusion process: an analogy with maxwell's demons. Medical Image Analysis 2, 243-260.
56. Thirion, J., 1998b. Image matching as a diffusion process: an analogy with maxwell's demons. Medical Image Analysis 2, 243-260.
57. Thompson, P., Toga, A., 1996. A surface-based technique for warping three-dimensional images of the brain. IEEE Transactions on Medical Imaging 15 (4), 402-417.
58. Vanier, M., Lecours, A., Ethier, R., Habib, M., Poncet, M., Milette, P., Salamon, G., 1985. Proportional localization system for anatomical interpretation of cerebral computed tomograms. J. Comput. Assist. Tomogr. 9 (4), 715-724.
59. White, T., O'Leary, D., Magnotta, V., Arndt, S., Flaum, M., Andreasen, N., 2001. Anatomic and functional variability: the effects of filter size in group fMRI data analysis. NeuroImage 13, 577-588.
60. Woods, R., Grafton, S., Holmes, C., Cherry, S., Mazziotta, J., 1998a. Automated image registration: I. General methods and intrasubject, intramodality validation. J. Comput. Assist. Tomogr. 22 (1), 139-152.
61. Woods, R., Grafton, S., Watson, J., Sicotte, N., Mazziotta, J., 1988b. Automated image registration: II. Intersubject validation of linear and nonlinear models. J. Comput. Assist. Tomogr. 22, 153-165.
62. Worsley, K., Evans, A., Marrett, S., Neelin, P., 1992. A three-dimensional statistical analysis for CBF activation studies in human brain. J. Cereb. Blood Flow Metab. 12 (6), 900-918.