The Streptomyces coelicolor A3(2) lipAR operon encodes an extracellular lipase and a new type of transcriptional regulator

Microbiology

Volumn 145, Issue 9, 1999, Pages 2365-2374

  Valdez, Fabiola ^a   González Cerón, Gabriela ^a   Kieser, Helen M ^b   Servín González, Luis ^a  

^a UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

^b NORWICH RESEARCH PARK   (United Kingdom)

Author keywords

Extracellular lipase; LipR transcriptional activator; MalT family of regulators; Streptomyces coelicolor

Indexed keywords

BACTERIAL ENZYME; TRIACYLGLYCEROL LIPASE;

ARTICLE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FAMILY; STREPTOMYCES COELICOLOR; TRANSCRIPTION REGULATION;

STREPTOMYCES ALBUS; STREPTOMYCES COELICOLOR; STREPTOMYCES EXFOLIATUS;

EID: 0042705655     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-145-9-2365     Document Type: Article

References (40)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Banchio, C. & Gramajo, H. C. (1997). Medium- and long-chain fatty acid uptake and utilization by Streptomyces coelicolor A3(2): first characterization of a Gram-positive bacterial system. Microbiology 143, 2439-2447.
3. Chater, K. F. (1993). Genetics of differentiation in Streptomyces. Annu Rev Microbiol 47, 685-713.
4. Chater, K. F. (1998). Taking a genetic scalpel to the Streptomyces colony. Microbiology 144, 1465-1478.
5. Cruz, H., Pérez, C., Wellington, E., Castro, C. & Servín-González, L. (1994). Sequence of the Streptomyces albus G lipase-encoding gene reveals the presence of a prokaryotic lipase family. Gene 144, 141-142.
6. Feller, G., Thiry, M. & Gerday, C. (1990). Sequence of a lipase gene from the antarctic psychrophile Moraxella TA144. Nucleic Acids Res 18, 6431.
7. Felsenstein, J. (1988). Phylogenies from molecular sequences: inference and reliability. Annu Rev Genet 22, 521-565.
8. Floriano, B. & Bibb, M. (1996). afsR is a pleiotropic but conditionally required regulatory gene for antibiotic production in Streptomyces coelicolor A3(2). Mol Microbiol 21, 385-396.
9. Fuqua, W. C., Winans, S. C. & Greenberg, E. P. (1994). Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators. J Bacteriol 176, 269-275.
10. Gralla, J. D. & Collado-Vides, J. (1996). Organization and function of transcription regulatory elements. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 1232-1245. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
11. Hattori, K., Adachi, H., Matsuzawa, A., Yamamoto, K., Tsujimoto, M., Aoki, J., Hattori, M., Arai, H. & Inoue, K. (1996). cDNA cloning and expression of intracellular platelet-activating factor (PAF) acetylhydrolase II. Its homology with plasma PAF acetylhydrolase. J Biol Chem 271, 33032-33038.
12. Hopwood, D. A., Bibb, M. J., Chater, K. F. & 7 other authors (1985). Genetic Manipulation of Streptomyces: a Laboratory Manual. Norwich: John Innes Foundation.
13. Horinouchi, S., Kito, M., Nishiyama, M., Furuya, K., Hong, S. K., Miyake, K. & Beppu, T. (1990). Primary structure of AfsR, a global regulatory protein for secondary metabolite formation in Streptomyces coelicolor A3(2). Gene 95, 49-56.
14. Inoue, H., Nojima, H. & Okayama, H. (1990). High efficiency transformation of Escherichia coli with plasmids. Gene 96, 23-28.
15. Katz, L., Thompson, C. J. & Hopwood, D. A. (1983). Cloning and expression of the tyrosinase gene from Streptomyces antibioticus in Streptomyces lividans. J Gen Microbiol 129, 2703-2714.
16. Kunkel, T. A. (1985). Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc Natl Acad Sci USA 82, 488-492.
17. Molnar, I., Aparicio, J. F., Haydock, S. F., Khaw, L. E., Schwecke, T., Konig, A., Staunton, J. & Leadlay, P. F. (1996). Organisation of the biosynthetic gene cluster for rapamycin in Streptomyces hygroscopicus: analysis of genes flanking the polyketide synthase. Gene 169, 1-7.
18. Murray, M. G. (1986). Use of sodium trichloroacetate and mung bean nuclease to increase sensitivity and precision during transcript mapping. Anal Biochem 158, 165-170.
19. Oh, S. H. & Chater, K. F. (1997). Denaturation of circular or linear DNA facilitates targeted integrative transformation of Streptomyces coelicolor A3(2): possible relevance to other organisms. J Bacteriol 179, 122-127.
20. Olukoshi, E. R. & Packter, N. M. (1994). Importance of stored triacylglycerols in Streptomyces: possible carbon source for antibiotics. Microbiology 140, 931-943.
21. Pao, G. M. & Saier, M. H., Jr (1995). Response regulators of bacterial signal transduction systems: selective domain shuffling during evolution. J Mol Evol 40, 136-154.
22. Peng, H. L., Yang, Y. H., Deng, W. L. & Chang, H. Y. (1997). Identification and characterization of acoK, a regulatory gene of the Klebsiella pneumoniae acoABCD operon. J Bacteriol 179, 1497-1504.
23. Pérez, C., Juárez, K., García-Castells, E., Soberón, G. & Servín-González, L. (1993). Cloning, characterization and expression in Streptomyces lividans 66 of an extracellular lipase-encoding gene from Streptomyces sp. Mil. Gene 123, 109-114.
24. Redenbach, M., Kieser, H. M., Denapaite, D., Eichner, A., Cullum, J., Kinashi, H. & Hopwood, D. A. (1996). A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome. Mol Microbiol 21, 77-96.
25. Ruan, X., Stassi, D., Lax, S.A. & Katz. L. (1997). A second type-I PKS gene cluster isolated from Streptomyces hygroscopicus ATCC 29253, a rapamycin-producing strain. Gene 203, 1-9.
26. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
27. Schleif, R. (1996). Two positively regulated systems, ara and mal. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 1300-1309. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
28. Servín-González, L., Sampieri, A., Cabello, J., Galván, L., Juárez, V. & Castro, C. (1995). Sequence and functional analysis of the Streptomyces phaeochromogenes plasmid pJV1 reveals a modular organization of Streptomyces plasmids that replicate by rolling circle. Microbiology 141, 2499-2510.
29. Servín-González, L., Castro, C., Pérez, C., Rubio, M. & Valdez, F. (1997). bldA-dependent expression of the Streptomyces exfoliatus M11 lipase gene (lipA) is mediated by the product of a contiguous gene, lipR, encoding a putative transcriptional activator. J Bacteriol 179, 7816-7826.
30. Sommer, P., Bormann, C. & Gotz, F. (1997). Genetic and biochemical characterization of a new extracellular lipase from Streptomyces cinnamomeus. Appl Environ Microbiol 63, 3553-3560.
31. Strauch, E., Takano, E., Baylis, H. A. & Bibb, M. J. (1991). The stringent response in Streptomyces coelicolor A3(2). Mol Microbiol 5, 289-298.
32. Strol, W. R. (1992). Compilation and analysis of DNA sequences associated with apparent streptomycete promoters. Nucleic Acids Res 20, 961-974.
33. Sztajer, H., Maliszewska, I. & ieczorek, J. (1988). Production of exogenous lipases by bacteria, fungi and actinomycetes. Enzyme Microb Technol 10, 492-497.
34. Takano, E., Gramajo, H. C., Strauch, E., Andres, N., White, J. & Bibb, M. J. (1992). Transcriptional regulation of the redD transcriptional activator gene accounts for growth-phase-dependent production of the antibiotic undecylprodigiosin in Streptomyces coelicolor A3(2). Mol Microbiol 6, 2797-2804.
35. Takano, E., White, J., Thompson, C. J. & Bibb, M. J. (1995). Construction of thiostrepton-inducible, high-copy-number expression vectors for use in Streptomyces spp. Gene 166, 133-137.
36. Wei, Y., Swenson, L. Castro, C. & 7 other authors (1998). Structure of a microbial homologue of mammalian platelet-activating factor acetylhydrolases: Streptomyces exfoliatus lipase at 1·9 Å resolution. Structure 6, 511-519.
37. Wietzorrek, A. & Bibb, M. (1997). A novel family of proteins that regulates antibiotic production in streptomycetes appears to contain an OmpR-like DNA-binding fold. Mol Microbiol 25, 1181-1184.
38. Xue, Y., Zhao, L, Liu, H. W. & Sherman, D. H. (1998). A gene cluster for macrolide antibiotic biosynthesis in Streptomyces venezuelae: architecture of metabolic diversity. Proc Natl Acad Sci USA 95, 12111-12116.
39. Yanisch-Perron, C., Vieira, J. & Messing, J. (1985). Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33, 103-119.
40. Yuste, L., Canosa, I. & Rojo, F. (1998). Carbon-source-dependent expression of the PaIkB promoter from the Pseudomonas oleovorans alkane degradation pathway. J Bacteriol 180, 5218-5226.