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Volumn 49, Issue 2, 2003, Pages 75-83

Phylogenetic comparison of methanogen diversity in different wetland soils

Author keywords

Archaea; Methanosarcina; Peat

Indexed keywords

BACTERIAL DNA; RNA 16S;

EID: 0042674030     PISSN: 00221260     EISSN: None     Source Type: Journal    
DOI: 10.2323/jgam.49.75     Document Type: Article
Times cited : (35)

References (32)
  • 1
    • 0002367729 scopus 로고    scopus 로고
    • MOLPHY Version 2.3: Programs for molecular phylogenetics based on maximum likelihood
    • Adachi, J. and Hasegawa, M. (1996) MOLPHY Version 2.3: Programs for molecular phylogenetics based on maximum likelihood. Comput. Sci. Monogr., 28, 1-150.
    • (1996) Comput. Sci. Monogr. , vol.28 , pp. 1-150
    • Adachi, J.1    Hasegawa, M.2
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W., and Schleifer, K.-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev., 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 4
    • 0011242025 scopus 로고
    • Dissolved cation concentrations in Okefenokee Swamp surface water: Spatial and temporal variation
    • ed. by Cohen, A. D., Cassagrande, D. J., and Andrejko, M. J., Wetland Surveys, Los Alamos, NM
    • Auble, G. T. (1984) Dissolved cation concentrations in Okefenokee Swamp surface water: Spatial and temporal variation. In The Okefenokee Swamp: Its Natural History, Geology and Geochemistry, ed. by Cohen, A. D., Cassagrande, D. J., and Andrejko, M. J., Wetland Surveys, Los Alamos, NM, pp. 320-332.
    • (1984) The Okefenokee Swamp: Its Natural History, Geology and Geochemistry , pp. 320-332
    • Auble, G.T.1
  • 6
    • 0038377378 scopus 로고
    • Diurnal variation of water chemistry parameters in Okefenokee Swamp
    • ed. by Cohen, A. D., Cassagrande, D. J., and Andrejko, M. J., Wetland Surveys, Los Alamos, NM
    • Bosserman, R. W. (1984) Diurnal variation of water chemistry parameters in Okefenokee Swamp. In The Okefenokee Swamp: Its Natural History, Geology and Geochemistry, ed. by Cohen, A. D., Cassagrande, D. J., and Andrejko, M. J., Wetland Surveys, Los Alamos, NM, pp. 296-319.
    • (1984) The Okefenokee Swamp: Its Natural History, Geology and Geochemistry , pp. 296-319
    • Bosserman, R.W.1
  • 7
    • 0030790201 scopus 로고    scopus 로고
    • Regulation of root-associated methanotrophy by oxygen availability in the rhizosphere of two aquatic macrophytes
    • Calhoun, A. and King, G. M (1997) Regulation of root-associated methanotrophy by oxygen availability in the rhizosphere of two aquatic macrophytes. Appl. Environ. Microbiol., 63, 3051-3058.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3051-3058
    • Calhoun, A.1    King, G.M.2
  • 8
    • 0033012295 scopus 로고    scopus 로고
    • Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil
    • Chin, K.-J., Lukow, T., and Conrad, R. (1999) Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil. Appl. Environ. Microbiol., 65, 2341-2349.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2341-2349
    • Chin, K.-J.1    Lukow, T.2    Conrad, R.3
  • 9
  • 11
    • 0033861764 scopus 로고    scopus 로고
    • Distribution and diversity of archaea corresponding to the limnological cycle of a hypersaline stratified lake (Solar Lake, Sinai, Egypt)
    • Cytryn, E., Minz, D. R., Oremland, S., and Cohen, Y. (2000) Distribution and diversity of archaea corresponding to the limnological cycle of a hypersaline stratified lake (Solar Lake, Sinai, Egypt). Appl. Environ. Microbiol., 66, 3269-3276.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3269-3276
    • Cytryn, E.1    Minz, D.R.2    Oremland, S.3    Cohen, Y.4
  • 12
    • 0031909608 scopus 로고    scopus 로고
    • Acidophilic methanotrophic communities from Sphagnum peat bogs
    • Dedysh, S. N., Panikov, N. S., and Tiedje, J. M. (1998) Acidophilic methanotrophic communities from Sphagnum peat bogs. Appl. Environ. Microbiol., 64, 922-929.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 922-929
    • Dedysh, S.N.1    Panikov, N.S.2    Tiedje, J.M.3
  • 14
    • 0033754494 scopus 로고    scopus 로고
    • Effect of temperature on carbon and electron flow and on the archaeal community in methanogenic rice field soil
    • Fey, A. and Conrad, R. (2000) Effect of temperature on carbon and electron flow and on the archaeal community in methanogenic rice field soil. Appl. Environ. Microbiol., 66, 4790-4797.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4790-4797
    • Fey, A.1    Conrad, R.2
  • 15
    • 2542508293 scopus 로고    scopus 로고
    • Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval
    • Grosskopf, R., Janssen, P. H., and Liesack, W. (1998) Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl. Environ. Microbiol., 64, 960-969.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 960-969
    • Grosskopf, R.1    Janssen, P.H.2    Liesack, W.3
  • 16
    • 0030032633 scopus 로고    scopus 로고
    • Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis
    • Hales, B. A., Edwards, C., Ritchie, D. A., Hall, G., Pickup, R. W., and Saunders, J. R. (1996) Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis. Appl. Environ. Microbiol., 62, 668-675.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 668-675
    • Hales, B.A.1    Edwards, C.2    Ritchie, D.A.3    Hall, G.4    Pickup, R.W.5    Saunders, J.R.6
  • 17
    • 0033949683 scopus 로고    scopus 로고
    • Detection of methane oxidizing bacteria in forest soil by monooxygenase PCR amplification
    • Jensen, S., Holmes, A. J., Olsen, R. A., and Murrell, J. C. (2000) Detection of methane oxidizing bacteria in forest soil by monooxygenase PCR amplification. Microb. Ecol., 39, 282-289.
    • (2000) Microb. Ecol. , vol.39 , pp. 282-289
    • Jensen, S.1    Holmes, A.J.2    Olsen, R.A.3    Murrell, J.C.4
  • 18
    • 0028048277 scopus 로고
    • Associations of methanotrophs with the roots and rhizomes of aquatic vegetation
    • King, G. M. (1994) Associations of methanotrophs with the roots and rhizomes of aquatic vegetation. Appl. Environ. Microbiol., 60, 3220-3227.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3220-3227
    • King, G.M.1
  • 20
    • 0004125111 scopus 로고    scopus 로고
    • 3rd ed., John Wiley & Sons, Inc., New York, NY
    • Mitsch, W. J. and Gosselink, J. G. (2000) Wetlands, 3rd ed., John Wiley & Sons, Inc., New York, NY, 920 pp.
    • (2000) Wetlands , pp. 920
    • Mitsch, W.J.1    Gosselink, J.G.2
  • 21
    • 0030831861 scopus 로고    scopus 로고
    • Phylogenetic diversity of Archaea in sediment samples from coastal salt marsh
    • Munson, M. A., Nedwell, D. B., and Embley, T. M. (1997) Phylogenetic diversity of Archaea in sediment samples from coastal salt marsh. Appl. Environ. Microbiol., 63, 4729-4733.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4729-4733
    • Munson, M.A.1    Nedwell, D.B.2    Embley, T.M.3
  • 22
    • 0031716660 scopus 로고    scopus 로고
    • Molecular methods for the study of methanotroph ecology
    • Murrell, J. C., McDonald, I. R., and Bourne, D. G. (1998) Molecular methods for the study of methanotroph ecology. FEMS Microbiol. Ecol., 27, 103-114.
    • (1998) FEMS Microbiol. Ecol. , vol.27 , pp. 103-114
    • Murrell, J.C.1    McDonald, I.R.2    Bourne, D.G.3
  • 23
    • 0032971335 scopus 로고    scopus 로고
    • Phylogenetic analysis of peat bog methanogen populations
    • Nercessian, D., Upton, M., Lloyd, D., and Edwards, C. (1999) Phylogenetic analysis of peat bog methanogen populations. FEMS Microbiol. Lett., 173, 425-429.
    • (1999) FEMS Microbiol. Lett. , vol.173 , pp. 425-429
    • Nercessian, D.1    Upton, M.2    Lloyd, D.3    Edwards, C.4
  • 24
    • 0004125828 scopus 로고
    • John Wiley and Sons, Inc., New York, NY
    • Pielou, E. C. (1975) Ecological Diversity, John Wiley and Sons, Inc., New York, NY, 165 pp.
    • (1975) Ecological Diversity , pp. 165
    • Pielou, E.C.1
  • 25
    • 0031417412 scopus 로고    scopus 로고
    • Detection of methanogens and methanotrophs in natural environments
    • Ritchie, D. A., Edwards, C., McDonald, I. R., and Murrell, J. C. (1998) Detection of methanogens and methanotrophs in natural environments. Glob. Change Biol., 3, 339-350.
    • (1998) Glob. Change Biol. , vol.3 , pp. 339-350
    • Ritchie, D.A.1    Edwards, C.2    McDonald, I.R.3    Murrell, J.C.4
  • 27
    • 0041846289 scopus 로고
    • General hydrology and mineral budgets for Okefenokee Swamp
    • ed. by Cohen, A. D., Cassagrande, D. J., and Andrejko, M. J., Wetland Surveys, Los Alamos, NM
    • Rykiel, E. J., Jr. (1984) General hydrology and mineral budgets for Okefenokee Swamp. In The Okefenokee Swamp: Its Natural History, Geology and Geochemistry, ed. by Cohen, A. D., Cassagrande, D. J., and Andrejko, M. J., Wetland Surveys, Los Alamos, NM, pp. 212-218.
    • (1984) The Okefenokee Swamp: Its Natural History, Geology and Geochemistry , pp. 212-218
    • Rykiel E.J., Jr.1
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol., 4, 406-425.
    • (1987) Mol. Biol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 31
    • 0025300402 scopus 로고
    • Towards a natural system of organism: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese, C. R., Kandler, O., and Wheelis, M. L. (1990) Towards a natural system of organism: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA, 87, 4576-4579.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 32
    • 0042848338 scopus 로고
    • Phytosociological study in the vegetation of Akaiyachi moor
    • Yoshioka, K. (1961) Phytosociological study in the vegetation of Akaiyachi moor. Ecol. Rev., 15, 163-175.
    • (1961) Ecol. Rev. , vol.15 , pp. 163-175
    • Yoshioka, K.1


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