RNA-dependent RNA polymerase gene sequence from foot-and-mouth disease virus in Hong Kong

Biochemical and Biophysical Research Communications

Volumn 308, Issue 4, 2003, Pages 899-905

  Chen, Xi ^a   Feng, Qian ^a   Wu, Zhiyin ^a   Liu, Yingying ^a   Huang, Kun ^a   Shi, Rui ^a   Chen, Sidi ^a   Lu, Wen ^a   Ding, Mingxiao ^a   Collins, Richard A ^b   Fung, Yin Wan Wendy ^b   Lau, Lok Ting ^a,b   Yu, Albert Cheung Hoi ^a,b   Chen, Jianguo ^a  

^a PEKING UNIVERSITY   (China)

^b Hong Kong DNA Chips Limited   (Hong Kong)

Author keywords

3Dpol gene; Foot and mouth disease virus; Hypermutation; RNA dependent RNA polymerase; Sequence alignment; Serotype

Indexed keywords

AMINO ACID; RNA DIRECTED RNA POLYMERASE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CONTROLLED STUDY; FOOT AND MOUTH DISEASE VIRUS; GENE MUTATION; GENE SEQUENCE; GENETIC CODE; GENETIC CONSERVATION; HONG KONG; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PICORNAVIRUS; PRIORITY JOURNAL; PROTEIN MOTIF; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SEROTYPE; VIRUS ISOLATION;

FOOT-AND-MOUTH DISEASE VIRUS; PICORNAVIRIDAE;

EID: 0042160076     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-291X(03)01511-0     Document Type: Article

References (13)

1. Infectious Diseases in Livestock: Policy Document 15/02, The Royal Society, London, 2002.
2. George M., Venkataramanan R., Pattnaik B., Sanyal A., Gurumurthy C.B., Hemadri D., Tosh C. Sequence analysis of the RNA polymerase gene of foot-and-mouth disease virus serotype Asia1. Virus Genes. 22:2001;21-26.
3. Lubinski J.M., Ransone L.J., Dasgupta A. Primer-dependent synthesis of covalently linked dimeric RNA molecules by poliovirus replicase. J. Virol. 61:1987;2997-3003.
4. Steitz T.A. A mechanism for all polymerases. Nature. 391:1998;231-232.
5. Hansen J.L., Long A.M., Schultz S.C. Structure of the RNA dependant RNA polymerase of poliovirus. Structure. 5:1997;1109-1122.
6. pol): Structural, biochemical, and biological analysis of conserved structural motifs A and B. J. Biol. Chem. 275:2000;25523-25532.
7. Jablonski S.A., Morrow C.D. Mutation of the aspartic acid residues of the GDD sequence motif of poliovirus RNA-dependent RNA polymerase results in enzymes with altered metal ion requirements for activity. J. Virol. 69:1995;1532-1539.
8. O'Reilly E.K., Kao C.C. Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure. Virology. 252:1998;287-303.
9. Koonin E.V. The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J. Gen. Virol. 72:1991;2197-2206.
10. Feng Q., Chen X., Ma O., Liu Y., Ding M., Collins R.A., Ko L.S., Xing J., Lau L.T., Yu A.C.H., Chen J. Serotype and VP1 gene sequence of a foot-and-mouth disease virus from Hong Kong (2002). Biochem. Biophys. Res. Commun. 302:2003;715-721.
11. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:1997;4876-4882.
12. Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics. 17:2001;1244-1245.
13. Poch O., Sauvaget I., Delarue M., Tordo N. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J. 8:1989;3867-3874.