Reaction-based modeling of quinone-mediated bacterial iron(III) reduction

Geochimica et Cosmochimica Acta

Volumn 67, Issue 15, 2003, Pages 2735-2748

  Burgos, William D ^a   Fang, Yilin ^a   Royer, Richard A ^a   Yeh, Gour Tsyh ^b   Stone, James J ^a   Jeon, Byong Hun ^a   Dempsey, Brian A ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CENTRAL FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOCHEMISTRY; HEMATITE; IRON-REDUCING BACTERIUM; REACTION RATE;

EID: 0042065363     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0016-7037(03)00105-4     Document Type: Article

References (50)

1. APHA (1995) Standard Methods for the Examination of Water and Wastewater (ed. A. P. H. Association), pp. 3-66 to 3-68 and 5-7 to 5-8
2. Brooks S.C.Carroll S.L.Jardine P.M.Sustained bacterial reduction of Co(III)EDTA- in the presence of competing geochemical oxidation during dynamic flow Env. Sci. Tech 33 1999 3002-3011
3. Burgos W.D.Royer R.A.Fang Y.Yeh G.Fisher A.S.Jeon B.H.Dempsey B.A.Theoretical and experimental considerations related to reaction-based modeling: A case study using iron(III) oxide bioreduction Geomicrobio. J 192 2002 1-35
4. Caccavo F.Lonergan D.J.Lovley D.R.Davis M.Stolz J.F.McInerney M.J.Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism Appl. Env. Microbio 60 1994 3752-3759
5. Chen Y. (1994) CIRF: A general coupled reaction-transport model and simulator. Ph.D., Indiana University
6. Chilakapati A (1995) RAFT. A simulator for reactive flow and transport of groundwater contaminants. PNL-10636. Pacific Northwest National Laboratory. Richland, WA
7. Chilakapati A.Ginn T.Szecsody J.E.An analysis of complex reaction networks in groundwater modeling Water Res. Res 34 1998 1767-1780
8. Clark W. M. (1960) Oxidation-Reduction Potentials of Organic Systems. The Williams and Wilkins Co
9. Cummings D. E., Caccavo J., F., Fendorf S. and Rosenzweig R. F. (1999) Arsenic mobilization by the dissimilatory Fe(III)-reducing bacterium Shewanella alga BrY. Env. Sci. Tech. 33, 723-729
10. Davis J.A.Hem J.D.The Surface Chemistry of Aluminum Oxides and Hydroxides Sposito G. The Environmental Chemistry of Aluminum 1989 CRC Press
11. Dzombak D.A.Morel F.M.M. Surface Complexation Modeling: Hydrous Ferric Oxide 1990 John Wiley - Sons
12. Fang Y., Yeh G. T. and Burgos W. D. (2003) A General Paradigm to Model Reaction-Based Biogeochemical Processes in Batch Systems. Accepted by Water Resources Research November 2002
13. Fein J.B.Daughney C.J.Yee N.Davis T.A.A chemical equilibrium model for metal adsorption onto bacterial surfaces Geochim. Cosmochim. Acta 61 1997 3319-3328
14. Fendorf S.E.Li G.Kinetics of chromate reduction by ferrous iron Env. Sci. Tech 30 1996 1614-1617
15. Fredrickson J.K.Zachara J.M.Kennedy D.W.Dong H.Onstott T.C.Hinman N.W.Li S.-M.Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium Geochim. Cosmochim. Acta 6219-20 1998 3239-3257
16. Fredrickson J.K.Zachara J.M.Kennedy D.W.Duff M.C.Gorby Y.A.Li S.M.W.Krupka K.M.Reduction of U(VI) in goethite (alpha-FeOOH) suspensions by a dissimilatory metal-reducing bacterium Geochim. Cosmochim. Acta 6418 2000 3085-3098
17. Fultz M.L.Durst R.A.Mediator Compounds for the Electrochemcial Study of Biological Redox Systems: A Compilation Anal. Chim. Acta 140 1982 1-18
18. Hansel, C. (2002) Personal communication with W. Burgos
19. Jeon B.H.Dempsey B.A.Burgos W.D.Royer R.A.Reactions of ferrous iron with hematite Coll. Surf. A 191 2001 41-55
20. Kim S.Picardal F.W.Enhanced anaerobic biotransformation of carbon tetrachloride in the presence of reduced iron oxides Env. Toxicol. Chem 18 1999 2142-2150
21. Klausen J.Trober S.P.Haderlein S.B.Schwarzenbach R.P.Reduction of substituted nitrobenzenes by Fe(II) in aqueous mineral suspensions Env. Sci. Technol 29 1995 2396-2404
22. Langner H.W.Inskeep W.P.Microbial reduction of arsenate in the presence of ferrihydrite Env. Sci. Technol 34 2000 3131-3136
23. Liger E.Charlet L.Van Cappellen P.Surface catalysis of uranium(VI) reduction by iron(II) Geochim. Cosmochim. Acta 6319-20 1999 2939-2955
24. Lasaga A.C.Chemical kinetics of water-rock interactions J. Geophys. Res 89 1994 4009-4025
25. Lichtner P. C, and Seth M. S (1996) User's Manual for MULTIFLO: Part II MULTIFLO 1.0 and GEM 1.0, Multicomponent-multiphase Reactive Transport Model. Southwest Research Institute
26. Liu C.Kota S.Zachara J.M.Fredrickson J.K.Brinkman C.K.Kinetic analysis of the bacterial reduction of geothite Env. Sci. Technol 3512 2001 2482-2490
27. 2(s) Env. Sci. Technol 36 2002 1452-1459
28. Liu C.Zachara J.M.Gorby Y.A.Szecsody J.E.Brown C.F.Microbial reduction of Fe(III) and sorption/precipitation on Shewanella putrefaciens strain CN32 Env. Sci. Technol 35 2001 1385-1393
29. Lovley D.R.Coates J.D.Blunt-Harris E.L.Phillips E.J.P.Woodward J.C.Humic substances as electron acceptors for microbial respiration Nature 3826590 1996 445-448
30. Lovley D.R.Goodwin S.Hydrogen concentrations as an indicator of the predominant terminal electron-accpeting reaction in aquatic sediments Geochim. Cosmochim. Acta 52 1988 2993-3003
31. Lovley D.R.Phillips E.J.P.Gorby Y.A.Landa E.R.Microbial Reduction of Uranium Nature 3506317 1991 413-416
32. MacQuarrie K.T.B.Sudicky E.A.Frind E.O.Simulation of biodegradable organic contaminants in groundwater 1. Numerical formulation in principal directions Water Res. Res 26 1990 207-222
33. Newman D.K.Kolter R.A role for excreted quinones in extracellular electron transfer Nature 405 2000 2396-2404
34. Roden E.E.Urrutia M.M.Ferrous iron removal promotes microbial reduction of crystalline iron(III) oxides Env. Sci. Technol 3311 1999 1847-1853
35. Roden E.E.Zachara J.M.Microbial reduction of crystalline iron(III) oxides: Influence of oxide surface area and potential for cell growth Env. Sci. Technol 305 1996 1618-1628
36. Royer R.A.Burgos W.D.Fisher A.F.Unz R.F.Dempsey B.A.Enhancement of biological reduction of hematite by electron shuttling and Fe(II) complexation Env. Sci. Technol 36 2002 1939-1946
37. Salvage K.M.Yeh G.T.Development and application of a numerical model of kinetic and equilibrium microbiological and geochemical reactions (BIOKEMOD) J. Hydrol 20 1998 927-952
38. Soetaert K.Herman P.M.J.Middleburg J.J.A model of early diagenetic processes from shelf to abyssal depths Geochim. Cosmochim. Acta 60 1996 1019-1040
39. Steefel C.I.MacQuarrie K.T.B.Approaches to modeling of reactive transport in porous media Lichtner P.C. Steefel C.I. Oelkers G.H. Reviews in Mineralogy vol. 34 1996 84-129 Mineralogical Society of America
40. Steefel C.I.van Cappellen P.Preface: Reactive transport modeling of natural systems J. Hydrol 209 1998 1-7
41. Smith W.R. Computational Aspects of Chemical Equilibrium in Complex Systems 1980 Academic Press, IncNew York, NY
42. Smith, R. W. and Wissen R. W. (1979) Chemical Engineering Education, Winter, 1979, p. 26
43. Stone J. J. (2002) The Effect of Zinc on the Biological Reduction of Hematite. Ph.D. dissertation, The Pennsylvania State University, University Park, PA, December, 2002. 104 pages
44. Stumm W.Morgan J.J. Aquatic Chemistry 1996 John Wiley and Sons
45. Wildung R.E.Gorby Y.A.Krupka K.M.Hess N.J.Li S.W.Plymale A.E.McKinley J.P.Fredrickson J.K.Effect of Electron Donor and Solution Chemistry on Products of Dissimilatory Reduction of Technetium by Shewanella putrefaciens Appl. Env. Microbiol 666 2000 2451-2460
46. Xu T.Pruess K.Brimhall G.An improved equilibrium-kinetics speciation algorithm for redox reactions in variably saturated flow systems Comp. Geosci 256 1999 655-666
47. Yeh G.T.Burgos W.D.Zachara J.M.Modeling and measuring biogeochemical reactions: System consistency, data needs, and rate formulations Adv. Env. Res 5 2001 219-237
48. Yeh G. T., Fang Y. L. and Burgos W. D. (2002) A new paradigm of reaction-based water quality modeling. Proc. Fifth Intnl. Conf. Hydroinform
49. Yeh G.T.Tripathi V.S.A critical evaluation of recent developments in hydrogeochemical transport models of reactive multichemical components Water Resources Res 25 1989 93-108
50. Zachara J.M.Fredrickson J.K.Li S.-M.Kennedy D.W.Smith S.C.Gassman P.L.Bacterial Reduction of Crystalline Fe3+ Oxides in Single Phase Suspensions and Subsurface Materials Am. Mineral 83 1998 1426-1443