Automatic construction of 3-D statistical deformation models of the brain using nonrigid registration

IEEE Transactions on Medical Imaging

Volumn 22, Issue 8, 2003, Pages 1014-1025

  Rueckert, Daniel ^a   Frangi, Alejandro F ^b   Schnabel, Julia A ^c  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY OF ZARAGOZA   (Spain)

^c GUY S HOSPITAL   (United Kingdom)

Author keywords

Free form deformation; Image registration; Morphometry; Shape analysis

Indexed keywords

ALGORITHMS; BRAIN MODELS; COMPUTERIZED TOMOGRAPHY; DEFORMATION; MAGNETIC RESONANCE; STATISTICAL METHODS;

IMAGE REGISTRATION;

MEDICAL IMAGING;

ALGORITHM; ANATOMY; ARTICLE; BIOLOGICAL MODEL; BRAIN; COMPARATIVE STUDY; COMPUTER ASSISTED DIAGNOSIS; COMPUTER ASSISTED TOMOGRAPHY; EVALUATION; IMAGE SUBTRACTION; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE IMAGING; PATHOLOGY; REPRODUCIBILITY; SCHIZOPHRENIA; SENSITIVITY AND SPECIFICITY; STATISTICAL MODEL; THREE DIMENSIONAL IMAGING; VALIDATION STUDY;

ALGORITHMS; ANATOMY, CROSS-SECTIONAL; BRAIN; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; MODELS, BIOLOGICAL; MODELS, STATISTICAL; REPRODUCIBILITY OF RESULTS; SCHIZOPHRENIA; SENSITIVITY AND SPECIFICITY; SUBTRACTION TECHNIQUE; TOMOGRAPHY, X-RAY COMPUTED;

EID: 0041525280     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/TMI.2003.815865     Document Type: Article

References (46)

1. J. Gee, M. Reivich, and R. Bajcsy, "Elastically deforming 3-D atlas to match anatomical brain images," J. Comput Assist. Tomogr., vol. 17, no. 2, pp. 225-236, 1993.
2. D. L. Collins, T. M. Peters, and A. C. Evans, "An automated 3-D nonlinear deformation procedure for determiniation of gross morphometric variability in the human brain," in Proc. 3rd Int. Conf. Visualization Biomedical Computing (VBC'94), Rochester, MN, 1994, pp. 180-190.
3. J.-P. Thirion, "Image matching as a diffusion process: An analogy with Maxwell's demons," Med. Image Anal., vol. 2, no. 3, pp. 243-260, 1998.
4. G. E. Christensen, R. D. Rabbitt, and M. I. Miller, "Deformable templates using large deformation kinematics," IEEE Trans. Image Processing, vol. 5, pp. 1435-1447, Oct. 1996.
5. M. Bro-Nielsen and C. Gramkow, "Fast fluid registration of medical images," in Proc. 4th Int. Conf. Visualization Biomedical Computing (VBC'96), 1996, pp. 267-276.
6. H. Lester and S. R. Arridge, "A survey of hierarchical nonlinear medical image registration," Pattern Recogn., vol. 32, no. 1, pp. 129-149, 1999.
7. D. Rueckert, "Non-rigid registration: Techniques and applications," in Medical Image Registration, J. V. Hajnal, D. L. G. Hill, and D. J. Hawkes, Eds. Boca Raton, FL: CRC, 2001.
8. J. Talairach and P. Tournoux, Co-Planar Stereotactic Atlas of the Human Brain: 3-Dimensional Proportional System: An Approach to Cerebral Imaging. Stuttgart, Germany: Georg Thieme Verlag, 1988.
9. M. Miller, G. E. Christensen, Y. Amit, and U. Grenander, "Mathematical textbook of deformable neuroanatomies," in Proc. Nat. Acad. Sci., vol. 90, 1993, pp. 11 944-11 948.
10. P. Thompson and A. W. Toga, "Detection, visualization, and animation of abnormal anatomic structure with a deformable probabilistic atlas based on random vector field transformations," Med. Image Anal., vol. 1, no. 4, pp. 271-294, 1997.
11. J. C. Gee and R. K. Bajcsy, "Elastic matching: Continuum mechnanical and probabilistic analysis," in Brain Warping, A. W. Toga, Ed. New York: Academic, 1999, pp. 183-197.
12. A. Guimond, J. Meunier, and J.-P. Thirion, "Average brain models," Comput. Vision Image Understand., vol. 77, pp. 192-210, 2000.
13. T. F. Cootes, C. J. Taylor, D. H. Cooper, and J. Graham, "Active shape models - Their training and application," Comput. Vision Image Understand., vol. 61, no. 1, pp. 38-59, 1995.
14. T. F. Cootes, C. Beeston, G. J. Edwards, and C. J. Taylor, "A unified framework for atlas matching using active appearance models," in Proc. 16th Int. Conf. Information Processing Medical Imaging (IPMI'99), pp. 322-333.
15. A. Kelemen, G. Székely, and G. Gerig, "Elastic model-based segmentation of 3-D neurological data sets," IEEE Trans. Med. Imag., vol. 18, pp. 828-839, Oct. 1999.
16. M. E. Leventon, W. E. L. Grimson, and O. Faugeras, "Statistical shape influence in geodesic active contours," in Proc. Conf. Computer Vision Pattern Recognition (CVPR'00), pp. 316-323.
17. D. Cremers, C. Schnörr, and J. Weickert, "Diffusion-snakes combining statistical shape knowledge and image information in a variational framework," in Proc. IEEE Workshop Variational Level Set Methods, 2001, pp. 137-144.
18. Y. Wang and L. H. Staib, "Elastic model based nonrigid registration incorporating statistical shape information," in Proc. 1st Int. Conf. Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), Cambridge, MA, 1998, pp. 1162-1173.
19. M. Styner and G. Gerig, "Medical models incorporating object variability for 3-D shape analysis," in Proc. 17th Int. Conf. Information Processing Medical Imaging (IPMI'01), pp. 502-516.
20. P. Golland, W. E. L. Grimson, M. E. Shenton, and R. Kikinis, "Small sample size learning for shape analysis of anatomical structures," in Proc. 3rd Int. Conf. Medical Image Computing Computer-Assisted Intervention (MICCAI'00), Pittsburgh, PA, pp. 72-82.
21. _, "Deformation analysis for shape based classification," in Proc. 17th Int. Conf. Information Processing Medical Imaging (IPMI'01), Davis, CA, pp. 517-530.
22. Y. Wang, B. S. Peterson, and L. H. Staib, "Shape-based 3-D surface correspondence using geodesics and local geometry," in Proc. Conf. Computer Vision Pattern Recognition (CVPR'00), 2000, pp. 644-651.
23. R. H. Davies, C. J. Twining, T. F. Cootes, J. C. Waterton, and C. J. Taylor, "A minimum description length approach to statistical shape modeling," IEEE Trans. Med. Imag., vol. 21, pp. 525-537, May 2002.
24. _, "3-D statistical shape models using direct optimization of description length," in Proc. 7th Eur. Conf. Computer Vision (ECCV'02), pp. 3-20.
25. U. Grenander and M. I. Miller, "Computational anatomy: An emerging discipline," Quart. Appl. Math., vol. 56, no. 4, pp. 617-694, 1998.
26. S. C. Joshi, "Large deformation diffeomorphisms and Gaussian random fields for statistical characterization of brain sub-manifolds," Ph.D. dissertation, Dept., Elect., Eng., Washington Univ., St. Louis, MO, 1998.
27. J. G. Cseransky, S. Joshi, L. Wang, J. W. Haller, M. Gado, J. P. Miller, U. Grenander, and M. I. Miller, "Hippocampal morphometry in schizophrenia by high-dimensional brain mapping," in Proc. Nat. Acad. Sci., vol. 95, 1998, pp. 11 406-11 411.
28. L. Wang, S. C. Joshi, M. I. Miller, and J. G. Cseransky, "Statistical analysis of hippocampal asymmetry in schizophrenia," NeuroImage, vol. 14, pp. 531-545, 2001.
29. C. Davatzikos, M. Vaillant, S. M. Resnick, J. L. Prince, S. Letovsky, and R. N. Bryan, "A computerized approach for morphological analysis of the corpus callosum," J. Comput. Assist. Tomogr., vol. 20, pp. 88-97, 1996.
30. F. L. Bookstein, "Principal warps: Thin-plate splines and the decomposition of deformations," IEEE Trans. Pattern Anal. Machine Intell., vol. 11, pp. 567-585, June 1989.
31. J. R. DeQuardo, M. S. Keshavan, F. L. Bookstein, W. W. Bagwell, W. D. K. Green, J. A. Sweeny, G. L. Haas, R. Tandon, N. R. Schoolwer, and J. W. Pettegrew, "Landmark-based morphometric analysis of first-episode schizophrenia," Biol. Psych., vol. 45, pp. 1321-1328, 1999.
32. A. F. Frangi, D. Rueckert, J. A. Schnabel, and W. J. Niessen, "Automatic construction of multiple-object three-dimensional statistical shape models: Application to cardiac modeling," IEEE Trans. Med. Imag., vol. 21, pp. 1151-1166, Sept. 2002.
33. D. Rueckert, L. I. Sonoda, C. Hayes, D. L. G. Hill, M. O. Leach, and D. J. Hawkes, "Non-rigid registration using free-form deformations: Application to breast MR images," IEEE Trans. Med. Imag., vol. 18, pp. 712-721, Aug. 1999.
34. G. Subsol, J.-P. Thirion, and N. Ayache, "A scheme for automatically building three-dimensional morphometric anatomical atlases: Application to a skull atlas," Med. Image Anal., vol. 2, no. 1, pp. 37-60, 1998.
35. P. J. Besl and N. D. McKay, "A method for registration of 3-D shapes," IEEE Trans. Pattern Anal. Machine Intell., vol. 14, pp. 239-256, Feb. 1992.
36. J. A. Schnabel, D. Rueckert, M Quist, J. M. Blackall, A. D. C. Smith, T. Hartkens, G. P. Penney, W. A. Hall, H. Liu, C. L. Truwit, F. A. Gerritsen, D. L. G. Hill, and D. J. Hawkes, "A generic framework for nonrigid registration based on nonuniform multi-level free-form deformations," in Proc. 4th Int. Conf. Medical Image Computing Computer-Assisted Intervention (MICCAI'01), Utrecht, The Netherlands, pp. 573-581.
37. C. Studholme, D. L. G. Hill, and D. J. Hawkes, "An overlap invariant entropy measure of 3-D medical image alignment," Pattern Recognit., vol. 32, no. 1, pp. 71-86, 1998.
38. D. L. Collins, A. P. Zijdenbos, V. Kollokian, J. G. Sled, N. J. Kabani, C. J. Holmes, and A. C. Evans, "Design and construction of a realistic digital brain phantom," IEEE Trans. Med. Imag., vol. 17, pp. 463-468, Mar. 1998.
39. Statistical Parametric Mapping, Wellcome Department of Cognitive Neurology, Univ. College, London, U.K. [Online]. Available: http://www.fil.ion.ucl.ac.uk/spm/
40. D. L. Collins, A. C. Evans, C. Holmes, and T. M. Peters, "Automatic 3-D segmentation of neuro-anatomical structures from MRI," in Proc. 14th Int. Conf. Information Processing Medical Imaging (IPMI'95), pp. 139-152.
41. J. M. Fitzpatrick, "Detecting failure, assessing success," in Medical Image Registration, J. V. Hajnal, D. L. G. Hill, and D. J. Hawkes, Eds. Boca Raton, FL: CRC, 2001, pp. 117-139.
42. M. Litzkow, M. Livny, and M. Mutka, "Condor - A hunter of idle workstations," in Proc. 8th Int. Conf. Distributed Computing Systems, 1988, pp. 104-111.
43. J. Ashburner and K. J. Fristen, "Voxel-based morphometry - The methods," NeuroImage, vol. 11, no. 6, pp. 805-821, 2000.
44. F. L. Bookstein, "'Voxel-based morphometry' should not be used with imperfectly registered images," NeuroImage, vol. 14, no. 6, pp. 1452-1462, 2001.
45. J. Ashburner, C. Hutton, R. Frackowiak, I. Johnsrude, C. Price, and K. Friston, "Identifying global anatomical differences: Deformation-based morphometry," Human Brain Mapping, vol. 6, pp. 638-657, 1998.
46. M. K. Chung, K. J. Worsley, T. Paus, D. L. C. C. Cherif, I N. Giedd, J. L. Rapoport, and A. C. Evans, "A unified statistical approach to deformation-based morphometry," NeuroImage, vol. 14, no. 3, pp. 595-606, 2001.