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Volumn 37, Issue 4, 2003, Pages 571-584

Identification of Horizontal Gene Transfer from Phylogenetic Gene Trees

Author keywords

Evolutionary event; Horizontal gene transfer; Phylogenetic protein tree; Phylogenetic species tree; Statistics of evolutionary event search; Tree reconciliation

Indexed keywords

AQUIFEX AEOLICUS; ARCHAEBACTERIUM; ARTICLE; CHLAMYDIA; CONTROLLED STUDY; EVOLUTION; GENE IDENTIFICATION; GENOME; GRAM NEGATIVE BACTERIUM; HORIZONTAL GENE TRANSFER; NONHUMAN; ORTHOLOGY; PHYLOGENETIC TREE; PROKARYOSIS; SPIROCHETE; THERMOTOGA;

EID: 0041522567     PISSN: 00268933     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1025191411933     Document Type: Article
Times cited : (5)

References (19)
  • 1
    • 0036407127 scopus 로고    scopus 로고
    • Tree Reconciliation: Reconstruction of Species Phylogeny by Phylogenetic Gene Trees
    • V'yugin, V.V., Gelfand, M.S., and Lyubetsky, V.A. 2002. Tree Reconciliation: Reconstruction of Species Phylogeny by Phylogenetic Gene Trees. Mol. Biol., 36, 650-658.
    • (2002) Mol. Biol. , vol.36 , pp. 650-658
    • V'Yugin, V.V.1    Gelfand, M.S.2    Lyubetsky, V.A.3
  • 2
    • 0042858937 scopus 로고    scopus 로고
    • On an algorithm to search for horizontal gene transfer events basing on phylogenetic protein trees
    • V'yugin, V.V. and Lyubetsky, V.A. 2001. On an algorithm to search for horizontal gene transfer events basing on phylogenetic protein trees. Informatsionnye Protsessy, 1, 167-177.
    • (2001) Informatsionnye Protsessy , vol.1 , pp. 167-177
    • V'Yugin, V.V.1    Lyubetsky, V.A.2
  • 3
    • 0033533618 scopus 로고    scopus 로고
    • Thermotoga heats up lateral gene transfer
    • Logsdon J.M., Faguy D.M. 1999. Thermotoga heats up lateral gene transfer. Curr. Biol. 9, 747-751.
    • (1999) Curr. Biol. , vol.9 , pp. 747-751
    • Logsdon, J.M.1    Faguy, D.M.2
  • 4
    • 0003996787 scopus 로고
    • Ed. Clewell D.B., New York: Plenum Press
    • Bacterial Conjugation. 1993. Ed. Clewell D.B., New York: Plenum Press.
    • (1993) Bacterial Conjugation
  • 5
    • 0024475207 scopus 로고
    • High abundance of viruses found in aquatic environments
    • Bergh O., Borsheim K.Y., Bratbak G., Heldal M. 1989. High abundance of viruses found in aquatic environments. Nature. 340, 467-468.
    • (1989) Nature , vol.340 , pp. 467-468
    • Bergh, O.1    Borsheim, K.Y.2    Bratbak, G.3    Heldal, M.4
  • 6
    • 0033859551 scopus 로고    scopus 로고
    • The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways
    • Boucher Y., Doolitle W.F. 2000. The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways. Mol. Microbiol. 37, 703-716.
    • (2000) Mol. Microbiol. , vol.37 , pp. 703-716
    • Boucher, Y.1    Doolitle, W.F.2
  • 7
    • 0030809629 scopus 로고    scopus 로고
    • Selfish operons and speciation by gene transfer
    • Lawrence J.G. 1997. Selfish operons and speciation by gene transfer. Trends Microb. 5, 355-359.
    • (1997) Trends Microb. , vol.5 , pp. 355-359
    • Lawrence, J.G.1
  • 8
    • 0032855518 scopus 로고    scopus 로고
    • Gene transfer, speciation, and the evolution of bacterial genomes
    • Lawrence J.G. 1999. Gene transfer, speciation, and the evolution of bacterial genomes. Curr. Opin. Microbiol. 2, 519-523.
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 519-523
    • Lawrence, J.G.1
  • 10
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • Lawrence J.G., Ochman H. 1998. Molecular archaeology of the Escherichia coli genome. Proc. Natl. Acad. Sci. USA. 95, 9413-9417.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 11
    • 0033609333 scopus 로고    scopus 로고
    • Evidence for lateral gene transfer between archaea and bacteria from genome sequence of Thetmotoga maritima
    • Nelson K.E., Clayton R.A., Gill S.R. et al. 1999. Evidence for lateral gene transfer between archaea and bacteria from genome sequence of Thetmotoga maritima. Nature. 399, 323-329.
    • (1999) Nature , vol.399 , pp. 323-329
    • Nelson, K.E.1    Clayton, R.A.2    Gill, S.R.3
  • 12
    • 0036046771 scopus 로고    scopus 로고
    • Evolution of gene fusions: Horizontal transfer versus independent events
    • Research 0024
    • Yanai I., Wolf Y., Koonin E. 2002. Evolution of gene fusions: horizontal transfer versus independent events. Genome Biol. 3, Research 0024.
    • (2002) Genome Biol. , vol.3
    • Yanai, I.1    Wolf, Y.2    Koonin, E.3
  • 13
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes: Quntification and classification
    • Koonin E.V., Makarova K.S., Aravind L. 2001. Horizontal gene transfer in prokaryotes: quntification and classification. Annu. Review Microbiol. 55, 709-742.
    • (2001) Annu. Review Microbiol. , vol.55 , pp. 709-742
    • Koonin, E.V.1    Makarova, K.S.2    Aravind, L.3
  • 14
    • 0031110886 scopus 로고    scopus 로고
    • From gene to organismal phylogeny: Reconciled trees and gene tree/ species tree problem
    • Page R.D.M., Charlstone M.A. 1998. From gene to organismal phylogeny: reconciled trees and gene tree/ species tree problem. Mol. Phyl. Evol. 7, 231-240.
    • (1998) Mol. Phyl. Evol. , vol.7 , pp. 231-240
    • Page, R.D.M.1    Charlstone, M.A.2
  • 15
    • 0031774059 scopus 로고    scopus 로고
    • Genetree: Comparing gene and species phylogenies using reconciled trees
    • Page R.D.M. 1998. Genetree: comparing gene and species phylogenies using reconciled trees. Bioinform. Appl. Notes. 14, 819-820.
    • (1998) Bioinform. Appl. Notes. , vol.14 , pp. 819-820
    • Page, R.D.M.1
  • 16
    • 0348044549 scopus 로고    scopus 로고
    • Genome trees constructed using five different approaches suggest new major bacterial clades
    • Wolf Y., Rogozin I., Grishin N., Tatusov R., Koonin E. 2001. Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol. Biol. 1, 8.
    • (2001) BMC Evol. Biol. , vol.1 , pp. 8
    • Wolf, Y.1    Rogozin, I.2    Grishin, N.3    Tatusov, R.4    Koonin, E.5
  • 17
    • 0035225012 scopus 로고    scopus 로고
    • Two C or not two C: Recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins
    • Research 0033
    • Makarova K.S., Ponomarev V.A., Koonin E.V. 2001. Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Genome Biol. 2(9), Research 0033.
    • (2001) Genome Biol. , vol.2 , Issue.9
    • Makarova, K.S.1    Ponomarev, V.A.2    Koonin, E.V.3
  • 19
    • 2942622384 scopus 로고    scopus 로고
    • Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of eukaryotes
    • Mirkin B.G., Fenner T.I., Galperin M.Y., Koonin E.V. 2003. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of eukaryotes. BMC Evol. Biol. 3, 2.
    • (2003) BMC Evol. Biol. , vol.3 , pp. 2
    • Mirkin, B.G.1    Fenner, T.I.2    Galperin, M.Y.3    Koonin, E.V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.