ILR2, a novel gene regulating IAA conjugate sensitivity and metal transport in Arabidopsis thaliana

Plant Journal

Volumn 35, Issue 4, 2003, Pages 523-534

  Magidin, Mónica ^a,c   Pittman, Jon K ^b   Hirschi, Kendal D ^b   Bartel, Bonnie ^a  

^a RICE UNIVERSITY   (United States)

^b BAYLOR COLLEGE OF MEDICINE   (United States)

^c UNIVERSITY OF TORONTO   (Canada)

Author keywords

Auxin; Auxin conjugates; Cobalt; IAA Leu; Indole 3 acetic acid; Manganese

Indexed keywords

GENES; HYDROLYSIS; SUGARS;

MEMBRANE-SPANNING DOMAINS;

PLANTS (BOTANY);

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BIOLOGICAL TRANSPORT; CLONING, MOLECULAR; COBALT; INDOLEACETIC ACIDS; MANGANESE; MOLECULAR SEQUENCE DATA; MUTATION; PLANT ROOTS; POLYMORPHISM, GENETIC;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0041350551     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01826.x     Document Type: Article

References (57)

1. Ausubel, F., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (1999) Current Protocols in Molecular Biology. New York: Greene Publishing Associates, Wiley-Interscience.
2. Axelsen, K.B. and Palmgren, M.G. (2001) Inventory of the superfamily of P-type ion pumps in Arabidopsis. Plant Physiol. 126, 696-706.
3. Bak, S., Tax, F.E., Feldmann, K.A., Galbraith, D.W. and Feyereisen, R. (2001) CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis. Plant Cell, 13, 101-111.
4. Barlier, I., Kowalczyk, M., Marchant, A., Ljung, K., Bhalerao, R., Bennett, M., Sandberg, G. and Bellini, C. (2000) The SUR2 gene of Arabidopsis thaliana encodes the cytochrome P450 CYP83B1, a modulator of auxin homeostasis. Proc. Natl. Acad. Sci. USA, 97, 14819-14824.
5. Barrel, B. (1997) Auxin biosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48, 51-66.
6. Barrel, B. and Fink, G.R. (1995) ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates. Science, 268, 1745-1748.
7. Barrel, B., LeClere, S., Magidin, M. and Zolman, B.K. (2001) Inputs to the active indole-3-acetic acid pool: de novo synthesis, conjugate hydrolysis, and indole-3-butyric acid β-oxidation. J. Plant Growth Regul. 20, 198-216.
8. Bell, C.J. and Ecker, J.R. (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics, 19, 137-144.
9. Bevan, M. (1984) Binary Agrobacterium vectors for plant transformation. Nucl. Acids Res. 12, 8711-8721.
10. Burge, C. and Karlin, S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268, 78-94.
11. Celenza, J.L., Grisafi, P.L. and Fink, G.R. (1995) A pathway for lateral root formation in Arabidopsis thaliana. Genes Dev. 9, 2131-2142.
12. Clemens, S. (2001) Molecular mechanisms of plant metal tolerance and homeostasis. Planta, 212, 457-486.
13. Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
14. Cohen, J.D. and Bandurski, R.S. (1982) Chemistry and physiology of the bound auxins. Annu. Rev. Plant Physiol. 33, 403-430.
15. Connolly, E.L, Fett, J.P. and Guerinot, M.L. (2002) Expression of the IRT1 metal transporter is controlled by metals atthe levels of transcript and protein accumulation. Plant Cell, 14, 1347-1357.
16. Davies, P.J. (1995) Introduction. In Plant Hormones (Davies, P.J., ed.). Dordrecht: Kluwer Academic Publishers, pp. 1-38.
17. Davies, R.T., Goetz, D.H., Lasswell, J., Anderson, M.N. and Bartel, B. (1999) IAR3 encodes an auxin conjugate hydrolase from Arabidopsis. Plant Cell, 11,365-376.
18. Gray, W.M., Östin, A., Sandberg, G., Romano, C.P. and Estelle, M. (1998) High temperature promotes auxin-mediated hypocotyl elongation in Arabidopsis. Proc. Natl. Acad. Sci. USA, 95, 7197-7202.
19. Gründemann, D. and Schömig, E. (1996) Protection of DNA during preparative agarose gel electrophoresis against damage induced by ultraviolet light. Biotechniques, 21, 898-903.
20. Hamilton, E.I. (1994) The geobiochemistry of cobalt. Sci. Total Environ. 150, 7-39.
21. Haughn, G.W. and Somerville, C. (1986) Sulfonylurea-resistant mutants of Arabidopsis thaliana. Mol. Gen. Genet. 204, 430-434.
22. L-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector. Mol. Gen. Genet. 204, 383-396.
23. Konieczny, A. and Ausubel, F.M. (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 4, 403-410.
24. Kowalczyk, M. and Sandberg, G. (2001) Quantitative analysis of indole-3-acetic acid metabolites in Arabidopsis thaliana. Plant Physiol. 127, 1845-1853.
25. Larson, E.J. and Pecoraro, V.L. (1992) Introduction to manganese enzymes. In Manganese Redox Enzymes (Pecoraro, V.L., ed.). New York: VCH Publishers, pp. 1-28.
26. Lasswell, J., Rogg, L.E., Nelson, D.C., Rongey, C. and Bartel, B. (2000) Cloning and characterization of IARI, a gene required for IAA conjugate sensitivity in Arabidopsis. Plant Cell, 12, 2395-2408.
27. LeClere, S. and Barrel, B. (2001) A library of Arabidopsis35S-cDNA lines for identifying novel mutants. Plant Mol. Biol. 46, 695-703.
28. LeClere, S., Tellez, R., Rampey, R.A., Matsuda, S,P.T. and Bartel, B. (2002) Characterization of a family of IAA-amino acid conjugate hydrolases from Arabidopsis. J. Biol. Chem. 277, 20446-20452.
29. 2+-ATPase in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA, 94, 8579-8584.
30. Liu, X.F. and Culotta, V.C. (1999) Post-translation control of Nramp metal transport in yeast. Role of metal ions and the BSD2 gene. J. Biol. Chem. 274, 4863-4868.
31. Liu, X.F., Supek, F., Nelson, N. and Culotta, V.C. (1997) Negative control of heavy metal uptake by the Saccharomyces cerevisiae BSD2 gene. J. Biol. Chem. 272, 11763-11769.
32. Ljung, K., Hull, A.K., Kowalczyk, M., Marchant, A., Celenza, J., Cohen, J.D. and Sandberg, G. (2002) Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana. Plant Mol. Biol. 50, 309-332.
33. Marschner, H. (1995) Mineral Nutrition of Higher Plants. San Diego: Academic Press.
34. Mäser, P., Thomine, S., Schroeder, J.I. et al. (2001) Phylogenetic relationships within cation-transporter families of Arabidopsis thaliana. Plant Physiol. 126, 1646-1667.
35. McCain, D.C. and Markley, J.L. (1989) More manganese accumulates in maple sun leaves than in shade leaves. Plant Physiol. 90, 1417-1421.
36. Minet, M., Dufour, M.-E. and Lacroute, F. (1992) Complementation of Saccharomyces cerevisiae auxotrophic mutants by Arabidopsis thaliana cDNAs. Plant J. 2, 417-422.
37. Miyashita, N.T., Kawabe, A. and Innan, H. (1999) DNA variation in the wild type plant Arabidopsis thaliana revealed by amplified fragment length polymorphism analysis. Genetics, 152, 1723-1731.
38. Nagy, F., Kay, S.A. and Chua, N.-H. (1988) Analysis of gene expression in transgenic plants. In Plant Molecular Biology Manual (Gelvin, S.B. and Schilperoort, R.A., eds). Dordrecht: Kluwer Academic Publishers, pp. B4:1-29.
39. Normanly, J. and Bartel, B. (1999) Redundancy as a way of life - IAA metabolism. Curr. Opin. Plant Biol. 2, 207-213.
40. Normanly, J., Cohen, J.D. and Fink, G.R. (1993) Arabidopsis thaliana auxotrophs reveal a tryptophan-independent biosynthetic pathway for indole-3-acetic acid. Proc. Natl. Acad. Sci. USA, 90, 10355-10359.
41. Normanly, J., Grisafi, P., Fink, G.R. and Bartel, B. (1997) Arabidopsis mutants resistant to the auxin effects of indole-3-acetonitrile are defective in the nitrilase encoded by the NIT1 gene. Plant Cell, 9, 1781-1790.
42. Nugent, J.H.A., Rich, A.M. and Evans, M.C.W. (2001) Photosynthetic water oxidation: towards a mechanism. Biochim. Biophys. Acta, 1503, 138-146.
43. Östin, A., Kowalyczk, M., Bhalerao, R. and Sandberg, G. (1998) Metabolism of indole-3-acetic acid in Arabidopsis. Plant Physiol. 118, 285-296.
44. + antiporter. Identification of an N-terminal autoinhibitory domain. Plant Physiol. 127, 1020-1029.
45. + antiporter CAX1. J. Biol. Chem. 277, 26452-26459.
46. Rea, P.A., Li, Z.S., Lu, Y.P., Drozdowicz, Y.M. and Martinoia, E. (1998) From vacuolar GS-X pumps to multispecific ABC transporters. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49, 727-760.
47. Rogg, L.E., Lasswell, J. and Bartel, B. (2001) A gain-of-function mutation in IAA28 suppresses lateral root development. Plant Cell, 13, 465-480.
48. Salanoubat, M., Lemcke, K., Rieger, M. et al. (2000) Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Nature, 408, 820-823.
49. Salt, D.E. and Rauser, W.E. (1995) MgATP-dependent transport of phytochelatins across the tonoplast of oat roots. Plant Physiol. 107, 1293-1301.
50. Stasinopoulos, T.C. and Hangarter, R.P. (1990) Preventing photochemistry in culture media by long-pass light filters alters growth of cultured tissues. Plant Physiol. 93, 1365-1369.
51. 2+ pumps: insights from yeast. Annu. Rev. Plant Physiol. Plant Mol. Biol. 51, 433-462.
52. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
53. Thimann, K.V. (1977) Hormone Action in the Whole Life of Plants. Amherst: The University of Massachusetts Press.
54. Thimann, K.V. and Takahashi, N. (1961) Interrelationships between metallic ions and auxin action, and the growth promoting action of chelating agents. In Plant Growth Regulation. Fourth International Conference on Plant Growth Regulation (Klein, R.M., ed.). Ames, Iowa: The Iowa State University Press, pp. 363-380.
55. Tommasini, R., Vogt, E., Fromenteau, M., Hörtensteiner, S., Matile, P., Amrhein, N. and Martinoia, E. (1998) An ABC-transporter of Arabidopsis thaliana has both glutathione-conjugate and chlorophyll catabolite transport activity. Plant J. 13, 773-780.
56. Williams, L.E., Pittman, J.K. and Hall, J.L. (2000) Emerging mechanism for heavy metal transport in plants. Biochim. Biophys. Acta, 1465, 104-126.
57. 2+ stress. Plant Physiol. 130, 129-137.