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Volumn 120, Issue 2, 2003, Pages 346-361

Phylogeography of the California Thrasher (Toxostoma redivivum) based on nested-clade analysis of mitochondrial-DNA variation

Author keywords

[No Author keywords available]

Indexed keywords

BIRD; EVOLUTION; GENETIC VARIATION; PHYLOGEOGRAPHY;

EID: 0038818475     PISSN: 00048038     EISSN: None     Source Type: Journal    
DOI: 10.1093/auk/120.2.346     Document Type: Article
Times cited : (39)

References (47)
  • 1
    • 0003605613 scopus 로고
    • American Ornithologists' Union, Washington, D.C.
    • AMERICAN ORNITHOLOGISTS' UNION. 1957. Checklist of North American Birds, 5th ed. American Ornithologists' Union, Washington, D.C.
    • (1957) Checklist of North American Birds, 5th Ed.
  • 2
    • 0032774013 scopus 로고    scopus 로고
    • Phylogeography of Spotted Owl (Strix occidentalis) populations based on mitochondrial DNA sequences, gene flow, genetic structure, and a novel biogeographic pattern
    • BARROWCLOUGH, G. F., R. J. GUTÍERREZ, AND J. G. GROTH. 1999. Phylogeography of Spotted Owl (Strix occidentalis) populations based on mitochondrial DNA sequences, gene flow, genetic structure, and a novel biogeographic pattern. Evolution 53:919-931.
    • (1999) Evolution , vol.53 , pp. 919-931
    • Barrowclough, G.F.1    Gutíerrez, R.J.2    Groth, J.G.3
  • 3
    • 0023163377 scopus 로고
    • Mitochondrial DNA and human evolution
    • CANN, R. L., M. STONEKING, AND A. C. WILSON. 1987. Mitochondrial DNA and human evolution. Nature 325:31-36.
    • (1987) Nature , vol.325 , pp. 31-36
    • Cann, R.L.1    Stoneking, M.2    Wilson, A.C.3
  • 4
    • 0028456728 scopus 로고
    • Root probabilities for intraspecific gene trees under neutral coalescent theory
    • CASTELLOE, J., AND A. R. TEMPLETON. 1994. Root probabilities for intraspecific gene trees under neutral coalescent theory. Molecular Phylogenetics and Evolution 3:102-113.
    • (1994) Molecular Phylogenetics and Evolution , vol.3 , pp. 102-113
    • Castelloe, J.1    Templeton, A.R.2
  • 6
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • CLEMENT, M., D. POSADA, AND K. A. CRANDALL. 2000. TCS: A computer program to estimate gene genealogies. Molecular Ecology 9:1657-1659.
    • (2000) Molecular Ecology , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 7
    • 0038618397 scopus 로고    scopus 로고
    • California Thrasher (Toxostoma redivivum)
    • (A. Poole and F. Gill, Eds.). Academy of Natural Sciences, Philadelphia, and American Ornithologists' Union, Washington, D.C.
    • CODY, M. L. 1998. California Thrasher (Toxostoma redivivum). In The birds of North America, no. 323 (A. Poole and F. Gill, Eds.). Academy of Natural Sciences, Philadelphia, and American Ornithologists' Union, Washington, D.C.
    • (1998) The Birds of North America , vol.323
    • Cody, M.L.1
  • 8
    • 0030032992 scopus 로고    scopus 로고
    • Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences
    • CRANDALL, K. A. 1996. Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences. Molecular Biology and Evolution 13:115-131.
    • (1996) Molecular Biology and Evolution , vol.13 , pp. 115-131
    • Crandall, K.A.1
  • 9
    • 0038618391 scopus 로고    scopus 로고
    • DNA sequences reveal phylogeographic similarities of Neotropical bats and birds
    • DITCHFIELD, A. D., AND K. J. BURNS. 1998. DNA sequences reveal phylogeographic similarities of Neotropical bats and birds. Journal of Comparative Biology 3:165-170.
    • (1998) Journal of Comparative Biology , vol.3 , pp. 165-170
    • Ditchfield, A.D.1    Burns, K.J.2
  • 10
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • EXCOFFIER, L., P. E. SMOUSE, AND J. M. QUATTRO. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131:479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 11
    • 0032055555 scopus 로고    scopus 로고
    • Evolution on a volcanic conveyor belt: Using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates
    • FLEISCHER, R. C., C. E. MCINTOSH, AND C. L. TARR. 1998. Evolution on a volcanic conveyor belt: Using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates. Molecular Ecology 7:533-545.
    • (1998) Molecular Ecology , vol.7 , pp. 533-545
    • Fleischer, R.C.1    McIntosh, C.E.2    Tarr, C.L.3
  • 12
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • FU, Y.-X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.-X.1
  • 14
    • 0032242440 scopus 로고    scopus 로고
    • Molecular phylogenetics of finches and sparrows: Consequences of character state removal in cytochrome b sequences
    • GROTH, J. G. 1998. Molecular phylogenetics of finches and sparrows: Consequences of character state removal in cytochrome b sequences. Molecular Phylogenetics and Evolution 10: 377-390.
    • (1998) Molecular Phylogenetics and Evolution , vol.10 , pp. 377-390
    • Groth, J.G.1
  • 15
    • 0028484009 scopus 로고
    • Signature of ancient population growth in a low resolution mitochondrial DNA mismatch distribution
    • HARPENDING, H. C. 1994. Signature of ancient population growth in a low resolution mitochondrial DNA mismatch distribution. Human Biology 66:591-600.
    • (1994) Human Biology , vol.66 , pp. 591-600
    • Harpending, H.C.1
  • 16
    • 0001713781 scopus 로고
    • Avian evolution in the arid-lands of North America
    • HUBBARD, J. P. 1973. Avian evolution in the arid-lands of North America. Living Bird 12: 155-196.
    • (1973) Living Bird , vol.12 , pp. 155-196
    • Hubbard, J.P.1
  • 17
    • 0035100797 scopus 로고    scopus 로고
    • Molecular systematics and biogeography of Antillean thrashers, tremblers, and mocking-birds (Aves: Mimidae)
    • HUNT, J. S., E. BERMINGHAM, AND R. E. RICKLEFS. 2001. Molecular systematics and biogeography of Antillean thrashers, tremblers, and mocking-birds (Aves: Mimidae). Auk 118:35-55.
    • (2001) Auk , vol.118 , pp. 35-55
    • Hunt, J.S.1    Bermingham, E.2    Ricklefs, R.E.3
  • 18
    • 0035141693 scopus 로고    scopus 로고
    • Tripartite genetic subdivisions in the ornate shrew (Sorex ornatus)
    • MALDONADO, J. E., C. VILÀ, AND R. K. WAYNE. 2001. Tripartite genetic subdivisions in the ornate shrew (Sorex ornatus). Molecular Ecology 10: 127-147.
    • (2001) Molecular Ecology , vol.10 , pp. 127-147
    • Maldonado, J.E.1    Vilà, C.2    Wayne, R.K.3
  • 19
    • 0036007849 scopus 로고    scopus 로고
    • Phylogeographic structure and regional history of the dusky-footed wood-rat, Neotoma fuscipes
    • MATOCQ, M. 2002. Phylogeographic structure and regional history of the dusky-footed wood-rat, Neotoma fuscipes. Molecular Ecology 11:229-242.
    • (2002) Molecular Ecology , vol.11 , pp. 229-242
    • Matocq, M.1
  • 20
    • 11944259429 scopus 로고
    • Evolutionary relationships within the Ensatina eschscholtzii complex confirm the ring species interpretation
    • MORITZ, C., C. J. SCHNEIDER, AND D. B. WAKE. 1992. Evolutionary relationships within the Ensatina eschscholtzii complex confirm the ring species interpretation. Systematic Biology 41:273-291.
    • (1992) Systematic Biology , vol.41 , pp. 273-291
    • Moritz, C.1    Schneider, C.J.2    Wake, D.B.3
  • 21
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • POSADA, D., AND K. A. CRANDALL. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 22
    • 0034100234 scopus 로고    scopus 로고
    • GEODIS: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
    • POSADA, D., K. A. CRANDALL, AND A. R. TEMPLETON. 2000. GEODIS: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology 9:487-488.
    • (2000) Molecular Ecology , vol.9 , pp. 487-488
    • Posada, D.1    Crandall, K.A.2    Templeton, A.R.3
  • 25
    • 0036341571 scopus 로고    scopus 로고
    • Evidence for parallel ecological speciation in scincid lizards of the Eumeces skiltonianus species group (Squamata:Scincidae)
    • RICHMOND, J. Q., AND T. W. REEDER. 2002. Evidence for parallel ecological speciation in scincid lizards of the Eumeces skiltonianus species group (Squamata:Scincidae). Evolution 56:1498-1513.
    • (2002) Evolution , vol.56 , pp. 1498-1513
    • Richmond, J.Q.1    Reeder, T.W.2
  • 26
    • 0033227441 scopus 로고    scopus 로고
    • Phylogeography of the California mountain kingsnake, Lampropeltis zonata (Colubridae)
    • RODRIGUEZ-ROBLES, J. A., D. F. DENARDO, AND R. E. STAUB. 1999. Phylogeography of the California mountain kingsnake, Lampropeltis zonata (Colubridae). Molecular Ecology 8:1923-1934.
    • (1999) Molecular Ecology , vol.8 , pp. 1923-1934
    • Rodriguez-Robles, J.A.1    Denardo, D.F.2    Staub, R.E.3
  • 27
    • 0034771447 scopus 로고    scopus 로고
    • Mitochondrial DNA-based phylogeny of North American rubber boas, Charina bottae (Serpentes: Boidae)
    • RODRIGUEZ-ROBLES, J. A., G. R. STEWART, AND T. J. PAPENFUSS. 2001. Mitochondrial DNA-based phylogeny of North American rubber boas, Charina bottae (Serpentes: Boidae). Molecular Phylogenetics and Evolution 18:227-237.
    • (2001) Molecular Phylogenetics and Evolution , vol.18 , pp. 227-237
    • Rodriguez-Robles, J.A.1    Stewart, G.R.2    Papenfuss, T.J.3
  • 28
    • 0000621581 scopus 로고
    • Genetic evidence for a Pleistocene population explosion
    • ROGERS, A. R. 1995. Genetic evidence for a Pleistocene population explosion. Evolution 49:606-615.
    • (1995) Evolution , vol.49 , pp. 606-615
    • Rogers, A.R.1
  • 29
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • ROGERS, A. R., AND H. HARPENDING. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9:552-569.
    • (1992) Molecular Biology and Evolution , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 30
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
    • SCHNEIDER, S., AND L. EXOFFIER. 1999. Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA. Genetics 152:1079-1089.
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Exoffier, L.2
  • 32
    • 0023084310 scopus 로고
    • Calibration of mitochondrial DNA evolution in geese
    • SHIELDS, G. F., AND A. C. WILSON. 1987. Calibration of mitochondrial DNA evolution in geese. Journal of Molecular Evolution 24:212-217.
    • (1987) Journal of Molecular Evolution , vol.24 , pp. 212-217
    • Shields, G.F.1    Wilson, A.C.2
  • 33
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • SHIMODAIRA, H., AND M. HASEGAWA. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16:1114-1116.
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 34
    • 0000419235 scopus 로고
    • Geographic variation in genic and morphological characters in Peromyscus californicus
    • SMITH, M. F. 1979. Geographic variation in genic and morphological characters in Peromyscus californicus. Journal of Mammalogy 60: 705-722.
    • (1979) Journal of Mammalogy , vol.60 , pp. 705-722
    • Smith, M.F.1
  • 36
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • TAJIMA, F. 1989a. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-596.
    • (1989) Genetics , vol.123 , pp. 585-596
    • Tajima, F.1
  • 37
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • TAJIMA, F. 1989b. The effect of change in population size on DNA polymorphism, Genetics 123: 597-601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 38
    • 0029440528 scopus 로고
    • Mitochondrial DNA phylogeny of the California Newt Taricha torosa (Caudata, Salamandridae)
    • TAN, A. M., AND D. B. WAKE. 1995 Mitochondrial DNA phylogeny of the California Newt Taricha torosa (Caudata, Salamandridae). Molecular Phylogenetics and Evolution 4:83-394.
    • (1995) Molecular Phylogenetics and Evolution , vol.4 , pp. 83-394
    • Tan, A.M.1    Wake, D.B.2
  • 39
    • 0032055149 scopus 로고    scopus 로고
    • Nested clade analysis of phylogeographic data: Testing hypotheses about gene flow and population history
    • TEMPLETON, A. R. 1998. Nested clade analysis of phylogeographic data: Testing hypotheses about gene flow and population history. Molecular Ecology 7:381-397.
    • (1998) Molecular Ecology , vol.7 , pp. 381-397
    • Templeton, A.R.1
  • 40
    • 0023425198 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
    • TEMPLETON, A. R., E. BOERWINKLE, AND C. F. SING. 1987. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 117:343-351.
    • (1987) Genetics , vol.117 , pp. 343-351
    • Templeton, A.R.1    Boerwinkle, E.2    Sing, C.F.3
  • 41
    • 0026662698 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
    • TEMPLETON, A. R., K. A. CRANDALL, AND C. F. SING. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132:619-633.
    • (1992) Genetics , vol.132 , pp. 619-633
    • Templeton, A.R.1    Crandall, K.A.2    Sing, C.F.3
  • 42
    • 0029058158 scopus 로고
    • Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum
    • TEMPLETON, A. R., E. ROUTMAN, AND C. A. PHILLIPS. 1995. Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140:767-782.
    • (1995) Genetics , vol.140 , pp. 767-782
    • Templeton, A.R.1    Routman, E.2    Phillips, C.A.3
  • 43
    • 0027278852 scopus 로고
    • A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination
    • TEMPLETON, A. R., AND C. F. SING. 1993. A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134: 659-669.
    • (1993) Genetics , vol.134 , pp. 659-669
    • Templeton, A.R.1    Sing, C.F.2
  • 44
    • 0030838616 scopus 로고    scopus 로고
    • Incipient species formation in salamanders of the Ensatina complex
    • WAKE, D. B. 1997. Incipient species formation in salamanders of the Ensatina complex. Proceedings of the National Academy of Sciences USA 94:7761-7767.
    • (1997) Proceedings of the National Academy of Sciences USA , vol.94 , pp. 7761-7767
    • Wake, D.B.1
  • 47
    • 0032723772 scopus 로고    scopus 로고
    • Evolutionary patterns of morphometrics, allozymes, and mitochondrial DNA in thrashers (Genus Toxostoma)
    • ZINK, R. M., D. L. DITTMANN, J. KLICKA, AND R. C. BLACKWELL-RAGO. 1999. Evolutionary patterns of morphometrics, allozymes, and mitochondrial DNA in thrashers (Genus Toxostoma). Auk 116:1021-1038.
    • (1999) Auk , vol.116 , pp. 1021-1038
    • Zink, R.M.1    Dittmann, D.L.2    Klicka, J.3    Blackwell-Rago, R.C.4


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