Protein structure change studied by hydrogen-deuterium exchange, functional labeling, and mass spectrometry

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 12, 2003, Pages 7057-7062

  Englander, Joan J ^a   Del Mar, Charyl ^a   Li, Will ^a   Englander, S Walter ^a,e   Kim, Jack S ^b   Stranz, David D ^c   Hamuro, Yoshitomo ^d   Woods Jr , Virgil L ^b  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^c Sierra Analytics LLC   (United States)

^d ExSAR Corporation   (United States)

^e UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DEUTERIUM; HEMOGLOBIN; HYDROGEN; TRITIUM;

ACCURACY; ALLOSTERISM; ARTICLE; AUTOMATION; CONTROLLED STUDY; ENERGY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HUMAN; HUMAN CELL; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN STRUCTURE; PROTON TRANSPORT; REACTION ANALYSIS;

AMINO ACID SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DEUTERIUM; HEMOGLOBINS; HUMANS; HYDROGEN; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; PEPTIDE FRAGMENTS; PROTEIN DENATURATION; PROTEIN SUBUNITS; PROTEINS; THERMODYNAMICS;

TRITIUM;

EID: 0038810081     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.1232301100     Document Type: Article

References (46)

1. Woodward, C. K. (1994) Curr. Opin. Struct. Biol. 4, 112-116.
2. Scholtz, J. M. & Robertson, A. D. (1995) Methods Mol. Biol. 40, 291-311.
3. Englander, S. W., Sosnick, T. R., Englander, J. J. & Mayne, L. (1996) Curr. Opin. Struct. Biol. 6, 18-23.
4. Raschke, T. M. & Marqusee, S. (1998) Curr. Opin. Biotechnol. 9, 80-86.
5. Rogero, J. R., Englander, J. J. & Englander, S. W. (1986) Methods Enzymol. 131, 508-517.
6. Englander, S. W. & Englander, J. J. (1994) Methods Enzymol. 232, 26-42.
7. Rosa, J. J. & Richards, F. M. (1979) J. Mol. Biol. 133, 399-416.
8. Englander, S. W., Calhoun, D. B., Englander, J. J., Kallenbach, N. R., Liem, R. K. H., Malin, E. L., Mandal, C. & Rogero, J. R. (1980) Biophys. J. 577-590.
9. Englander, J. J., Rogero, J. R. & Englander, S. W. (1985) Anal. Biochem. 147, 234-244.
10. Zhang, Z. & Smith, D. L. (1993) Protein Sci. 2, 522-531.
11. Hoofnagle, A. N., Resing, K. A. & Ahn, N. G. (2003) Annu. Rev. Biophys. Biomol. Struct. 18, in press.
12. Woods, V. L., Jr., & Hamuro, Y. (2001) J. Cell. Biochem. Suppl. 37, 89-98.
13. Woods, V. L., Jr. (1997) U.S. Patent 5,658,739.
14. Woods, V. L., Jr. (2001) U.S. Patent 6,291,189.
15. Woods, V. L., Jr. (2001) U.S. Patent 6,331,400.
16. Hamuro, Y., Burns, L., Canaves, J., Hoffman, R., Taylor, S. & Woods, V. L., Jr. (2002) J. Mol. Biol. 321, 703-714.
17. Hamuro, Y., Wong, L., Shaffer, J., Kim, J. S., Stranz, D. D., Jennings, P. A., Woods, V. L., Jr., & Adams, J. A. (2002) J. Mol. Biol. 323, 871-881.
18. Hamuro, Y., Zawadzki, K. M., Kim, J. S., Stranz, D. D., Taylor, S. S. & Woods, V. L., Jr. (2003) J. Mol. Biol. 327, 1065-1076.
19. Englander, S. W., Englander, J. J., McKinnie, R. E., Ackers, G. K., Turner, G. J., Westrick, J. A. & Gill, S. J. (1992) Science 256, 1684-1687.
20. Holt, J. M. & Ackers, G. K. (1995) FASEB J. 9, 210-218.
21. Ackers, G. K. (1998) Adv. Protein Chem. 51, 185-253.
22. Ackers, G. K., Dalessio, P. M., Lew, G. H., Daugherty, M. A. & Holt, J. M. (2002) Proc Natl. Acad. Sci. USA 99, 9777-9782.
23. Englander, S. W., Calhoun, D. B. & Englander, J. J. (1987) Anal. Biochem. 161, 300-306.
24. Louie, G., Thao, T., Englander, J. J. & Englander, S. W. (1988) J. Mol. Biol. 201, 755-764.
25. Jeng, M.-F. & Englander, S. W. (1991). J. Mol. Biol. 221, 1045-1061.
26. Englander, S. W. & Kallenbach, N. R. (1984) Q. Rev. Biophys. 16, 521-655.
27. Hvidt, A. & Neilson, S. O. (1966) Adv. Protein Chem. 21, 287-386.
28. Bai, Y., Milne, J. S., Mayne, L. & Englander, S. W. (1993) Proteins Struct. Funct. Genet. 17, 75-86.
29. Connelly, G. P., Bai, Y., Jeng, M. F., Mayne, L. & Englander, S. W. (1993) Proteins Struct. Funct. Genet. 17, 87-92.
30. Maity, H., Lim, W. K., Rumbley, J. N. & Englander, S. W. (2003) Protein Sci. 12, 153-160.
31. Englander, J. J., Rogero, J. R. & Englander, S. W. (1983) J. Mol. Biol. 169, 325-344.
32. Ray, J. & Englander, S. W. (1986) Biochemistry 25, 3000-3007.
33. Malin, E. L. & Englander, S. W. (1980) J. Biol. Chem. 255, 10695-10701.
34. Perutz, M. F., Gronenborn, A. M., Clore, G. M., Fogg, J. H. & Shih, D. T. (1985) J. Mol. Biol. 183, 491-498.
35. Arnone, A. (1972) Nature 237, 146-149.
36. Perutz, M. F., Wilkinson, A. J., Paoli, M. & Dodson, G. G. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 1-34.
37. Englander, J. J., Rogero, J. R. & Englander, S. W. (1983) J. Mol. Biol. 63, 153-169.
38. Louie, G., Englander, J. J. & Englander, S. W. (1988) J. Mol. Biol. 201, 765-772.
39. Englander, J. J., Louie, G., McKinnie. R. E. & Englander, S. W. (1998) J. Mol. Biol. 284, 1695-1706.
40. Englander, J. J., Rumbley, J. N. & Englander, S. W. (1998) J. Mol. Biol. 284, 1707-1716.
41. Englander, S. W. (2000) Annu. Rev. Biophys. Biomol. Struct. 29, 213-238.
42. Benjamin, D. C., Williams, D. C., Smith-Gill, S. J. & Rule, G. S. (1992) Biochemistry 31, 9539-9545.
43. Hilser, V. J., Dowdy, D., Oas, T. G. & Freire, E. (1998) Proc. Natl. Acad. Sci. USA 95, 9903-9908.
44. Milne, J. S., Mayne, L., Roder, H., Wand, A. J. & Englander, S. W. (1998) Protein Sci. 7, 739-745.
45. Englander, S. W. & Mauel, C. (1972) J. Biol. Chem. 247, 2387-2394.
46. Liem, R. K. H., Calhoun, D. B., Englander, J. J. & Englander, S. W. (1980) J. Biol. Chem. 255, 10687-10694.