Interpretation of fluorescence decays using a power-like model

Biophysical Journal

Volumn 85, Issue 1, 2003, Pages 589-598

  Włodarczyk, Jakub ^a   Kierdaszuk, Borys ^a  

^a UNIVERSITY OF WARSAW   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BACTERIAL ENZYME; FORMYCIN; PHOSPHATE; PURINE NUCLEOSIDE PHOSPHORYLASE; TRYPTOPHAN; TRYPTOPHAN DERIVATIVE; TYROSINE; TYROSINE DERIVATIVE;

ARTICLE; ENZYME SUBSTRATE; ESCHERICHIA COLI; FLUORESCENCE; MATHEMATICAL MODEL; MEASUREMENT; NONHUMAN; PROBABILITY; PROTEIN STRUCTURE;

BACTERIA (MICROORGANISMS); EQUUS CABALLUS; ESCHERICHIA COLI;

EID: 0038649991     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(03)74503-2     Document Type: Article

References (33)

1. Alcala, J. R., E. Gratton, and F. G. Prendergast. 1987. Interpretation of fluorescence decays in proteins using continuous lifetime distributions. Biophys. J. 51:925-936.
2. Alcala, J. R. 1994. The effect of harmonic conformational trajectories on protein fluorescence and lifetime distributions. J. Chem. Phys. 101:4578-4584.
3. Beechem, J. M., J. R. Knutson, J. B. A. Ross, B. V. Turner, and L. Brand. 1988. Global resolution of heterogeneous decay by phase/modulation fluorometry: mixtures and proteins. Biochemistry. 22:6054-6058.
4. Careri, G., P. Fasella, and E. Gratton. 1979. Enzyme dynamics: the statistical physics approach. Annu. Rev. Biophys. Bioeng. 8:69-97.
5. Dittes, F. M. 2000. The decay of quantum systems with a small number of open channels. Phys. Rep. 339:215-216.
6. Eftink, M. R., and K. A. Hagman. 1986. Fluorescence lifetime and anisotropy studies with liver alcohol dehydrogenase and its complexes. Biochemistry. 25:6631-6637.
7. Eftink, M. R. 1992. Luminescence studies with horse liver alcohol dehydrogenase: information on the structure, dynamics, transitions and interactions of this enzyme. Adv. Biophys. Chem. 2:81-114.
8. Gryczynski, I., W. Wiczk, M. L. Johnson, and J. R. Lakowicz. 1988. Lifetime distributions and anisotropy decays of indole fluorescence in cyclohexane/ethanol mixtures by frequency-domain fluorometry. Biophys. Chem. 32:173-185.
9. Hirshfield, M. S., S. Chaffe, L. Koro-Johnson, A. Mary, A. A. Smith, and S. A. Short. 1991. Use of site-directed mutagenesis to enhance the epitope-shielding effect of covalent modification of proteins with polyethylene glycol. Proc. Natl. Acad. Sci. USA. 88:7185-7189.
10. Karplus, M., and J. A. McCammon. 1983. Dynamics of proteins, elements and function. Annu. Rev. Biochem. 53:263-300.
11. Kierdaszuk, B., A. Modrak-Wójcik, J. Wierzchowski, and D. Shugar. 2000. Formycin A and its n-methyl analogues, specific inhibitor of E. coli purine nucleoside phosphorylase (PNP): induced tautomeric shifts on binding to enzyme, and enzyme → ligand fluorescence resonance energy transfer. Biochim. Biophys. Acta. 1476:109-128.
12. Ladokhin, A. S. 1999. Red-edge excitation study of nonexponential fluorescence decay of indole in solution and in a protein. J. Fluorescence. 9:1-9.
13. Ladokhin, A. S., and S. H. White. 2001. Alphas and taus of tryptophan fluorescence in membranes. Biophys. J. 81:1825-1827.
14. Lakowicz, J. R., B. Kierdaszuk, I. Gryczynski, and H. Malak. 1996. Fluorescence of horse liver alcohol dehydrogenase using one- and two-photon excitation. J. Fluorescence. 6:51-59.
15. Lakowicz, J. R. 1999. Principles of Fluorescence Spectroscopy, 2nd Ed. Kluwer Academic/Plenum Publishers, New York. 130-131.
16. Lakowicz, J. R. 2000. On spectral relaxation in proteins. Photochem. Photobiol. 72:421-437.
17. 1H NMR studies of tyrosine and tyrosine analogues: correlation of NMR-determined rotamer populations and fluorescence kinetics. Biochemistry. 25:599-607.
18. Lee, B. K. C., J. Siegel, S. E. D. Webb, S. Léveque-Fort, M. J. Cole, R. Jones, K. Dowling, M. J. Lever, and P. M. W. French. 2001. Application of the stretched exponential function to fluorescence lifetime imaging. Biophys. J. 81:1265-1274.
19. Levenberg, K. A. 1944. A method for the solution of certain non-linear problems in least squares. Quart. Appl. Math. II:164-168.
20. Mao, C., W. J. Cook, M. Zhou, G. Koszalka, T. A. Krenitsky, and S. E. Ealick. 1997. The crystal structure of E. coli purine nucleoside phosphorylase: a comparison with human enzyme reveals a conserved topology. Structure. 5:1373-1383.
21. Marquardt, D. W. 1963. An algorithm for least-squares estimation of nonlinear parameters. J. Soc. Ind. Appl. Math. 11:431-441.
22. Montroll, E. W., and M. F. Schlesinger. 1983. Maximum entropy formalism, fractals, scaling phenomena, and l/f noise: a tale of tails. J. Stat. Phys. 32:209-230.
23. Nelder, J. A., and R. Meade. 1965. A simplex method for function minimization. Comput. J. 7:308-313.
24. Petterson, G. 1987. Liver alcohol dehydrogenase. Crit. Rev. Biochem. 21:349-389.
25. 1H NMR studies of tyrosyl residues in oxytocin and small peptides: correlation of NMR-determined conformations of tyrosyl residues and fluorescence decay kinetics. Biochemistry. 25:599-607.
26. 2]oxytocin. Biochemistry. 31:1585-1594.
27. Ross, J. B. A., W. R. Laws, K. W. Rousslang, and H. R. Wyssbrod. 1992b. Tyrosine fluorescence and phosphorescence from proteins and polypeptides. In Topics in Fluorescence Spectroscopy. Vol. 3, Biochemical Applications. J. R. Lakowicz, editor. Plenum Press, New York. 1-63.
28. Sobczyk, K., and J. Trȩbicki. 1993. Maximum entropy principle and stochastic nonlinear oscillators. Physica A. 193:448-468.
29. Stephens, M. A. 1976. EDF Statistics for goodness of fit and some comparisons. J. Am. Stat. Assoc. 69:730-737.
30. Szabo, A. G., T. M. Stepanik, D. M. Wayner, and N. M. Young. 1983. Conformational heterogeneity of the cooper binding site in azurin. Biophys. J. 41:233-244.
31. Wilk, G., and Z. Włodarczyk. 2001. Nonexponential decays and nonextensivity. Phys. Lett. A. 290:55-58.
32. Wilk, G., and Z. Włodarczyk. 1999. Interpretation of the nonextensivity parameter q in some applications of Tsallis statistics and Lévy distributions. Phys. Rev. Lett. 84:2770-2773.
33. Zimmermann, Th., H. Köppel, L. S. Cederbaum, G. Persch, and W. Demtröder. 1988. Confirmation of random-matrix fluctuations in molecular spectra. Phys. Rev. Lett. 61:3-6.