-
1
-
-
0035863762
-
The estimation of statistical parameters for local alignment score distributions
-
S. F. Altshul, R. Bundschuh, R.Olsen, and T. Hwa. The estimation of statistical parameters for local alignment score distributions. Nucleic Acids Res., 29:351-361, 2001.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 351-361
-
-
Altshul, S.F.1
Bundschuh, R.2
Olsen, R.3
Hwa, T.4
-
2
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
G. Apic, J. Gough, and S. A. Teichmann. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J. Mol. Biol., 310:311-324, 2001.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 311-324
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
3
-
-
0033957801
-
PRINTS-S: The database formerly known as PRINTS
-
T. Attwood, M. Croning, D. Flower, A. Lewis, J. Mabey, P. Scordis, J. Selley, and W. Wright. PRINTS-S: the database formerly known as PRINTS. Nucleic Acids Res., 28:225-227, 2000.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 225-227
-
-
Attwood, T.1
Croning, M.2
Flower, D.3
Lewis, A.4
Mabey, J.5
Scordis, P.6
Selley, J.7
Wright, W.8
-
4
-
-
0027177451
-
The SWISS-PROT protein sequence data bank, recent developments
-
A. Bairoch and B. Boeckmann. The SWISS-PROT protein sequence data bank, recent developments. Nucleic Acids Res., 21:3105 -3109, 1993.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3105-3109
-
-
Bairoch, A.1
Boeckmann, B.2
-
5
-
-
0033976458
-
The Pfam protein family database
-
A. Bateman, E. Birney, R. Durbin, S. R. Eddy, K. L. Howe, and E. L. Sonnhammer. The Pfam protein family database. Nucleic Acids Res., 28:263-266, 2000.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 263-266
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Howe, K.L.5
Sonnhammer, E.L.6
-
6
-
-
0034777598
-
Clustering protein sequences - Structure prediction by transitive homology
-
E. Bolten, A. Schliep, S. Schneckener, D. Schomburg, and R. Schrader. Clustering protein sequences - structure prediction by transitive homology. Bioinformatics, 17:935-941, 2001.
-
(2001)
Bioinformatics
, vol.17
, pp. 935-941
-
-
Bolten, E.1
Schliep, A.2
Schneckener, S.3
Schomburg, D.4
Schrader, R.5
-
7
-
-
0036340797
-
Randomness, structural uniqueness, modularity and neutral evolution in sequence space of model proteins
-
E. Bornberg-Bauer. Randomness, structural uniqueness, modularity and neutral evolution in sequence space of model proteins. Z. Phys. Chem., 216:139-154, 2002.
-
(2002)
Z. Phys. Chem.
, vol.216
, pp. 139-154
-
-
Bornberg-Bauer, E.1
-
8
-
-
0033957841
-
ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
-
F. Corpet, F. Servant, J. Gouzy, and D. Kahn. ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res., 28:267-269, 2000.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 267-269
-
-
Corpet, F.1
Servant, F.2
Gouzy, J.3
Kahn, D.4
-
9
-
-
0027199849
-
Sequence and topology: Unity and diversity all over again
-
R. F. Doolittle and T. L. Blundell. Sequence and topology: Unity and diversity all over again. Curr. Opn. Struct. Biol., 3:377-378, 1993.
-
(1993)
Curr. Opn. Struct. Biol.
, vol.3
, pp. 377-378
-
-
Doolittle, R.F.1
Blundell, T.L.2
-
11
-
-
0033944826
-
Gene RAGE: A robust algorithm for sequence clustering and domain detection
-
A. J. Enright and C. A. Ouzounis. Gene RAGE: a robust algorithm for sequence clustering and domain detection. Bioinformatics, 16:451-457, 2000.
-
(2000)
Bioinformatics
, vol.16
, pp. 451-457
-
-
Enright, A.J.1
Ouzounis, C.A.2
-
12
-
-
0037548183
-
A hypergraph-based method for unification of existing protein structure- and sequence-families
-
J. Freudenberg, R. Zimmer, D. Hanisch, and T. Lengauer. A hypergraph-based method for unification of existing protein structure- and sequence-families. In Silica Biology, 2001. http://www.bioinfo.de/isb/2001/02/0031
-
(2001)
Silica Biology
-
-
Freudenberg, J.1
Zimmer, R.2
Hanisch, D.3
Lengauer, T.4
-
14
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
S. Henikoff and J. Henikoff. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci., USA, 89:10915-10919, 1992.
-
(1992)
Proc. Natl. Acad. Sci., USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.2
-
15
-
-
0344417849
-
WWW-access to the SYSTERS protein sequence cluster set
-
A. Krause, P. Nicodeme, E. Bornberg-Bauer, M. Rehmsmeier, and M. Vingron. WWW-access to the SYSTERS protein sequence cluster set. Bioinformatics, 15:262-263, 1999.
-
(1999)
Bioinformatics
, vol.15
, pp. 262-263
-
-
Krause, A.1
Nicodeme, P.2
Bornberg-Bauer, E.3
Rehmsmeier, M.4
Vingron, M.5
-
16
-
-
0031547967
-
Global self-organisation of all known protein sequences reveals inherent biological signatures
-
M. Linial, N. Linial, N. Tishby, and G. Yona. Global self-organisation of all known protein sequences reveals inherent biological signatures. J. Mol. Biol., 268:539-556, 1997.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 539-556
-
-
Linial, M.1
Linial, N.2
Tishby, N.3
Yona, G.4
-
17
-
-
0019852177
-
Enhanced graphical matrix analysis of nucleic acid and protein sequences
-
J. V. Maizel and R. P. Lenk. Enhanced graphical matrix analysis of nucleic acid and protein sequences. Proc. Natl. Acad. Sci., USA, 78:7665-7669, 1981.
-
(1981)
Proc. Natl. Acad. Sci., USA
, vol.78
, pp. 7665-7669
-
-
Maizel, J.V.1
Lenk, R.P.2
-
18
-
-
0023723196
-
Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences
-
P. McCaldon and P. Argos. Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences. Proteins: Structure, Function and Genetics, 4:99-122, 1988.
-
(1988)
Proteins: Structure, Function and Genetics
, vol.4
, pp. 99-122
-
-
McCaldon, P.1
Argos, P.2
-
19
-
-
0031874788
-
DIVCLUS: An automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins
-
J. Park and S. A. Teichmann. DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins. Bioinformatics, 14:144-150, 1998.
-
(1998)
Bioinformatics
, vol.14
, pp. 144-150
-
-
Park, J.1
Teichmann, S.A.2
-
21
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
M. Remm, C. E. Storm, and E. L. Sonnhammer. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol., 314:1041-1052, 2001.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
22
-
-
0036171334
-
TreeWiz: Interactive exploration of huge trees
-
U. Rost and E. Bornberg-Bauer. TreeWiz: interactive exploration of huge trees. Bioinformatics, 18:109-114, 2002.
-
(2002)
Bioinformatics
, vol.18
, pp. 109-114
-
-
Rost, U.1
Bornberg-Bauer, E.2
-
23
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
-
E. L. Sonnhammer and R. Durbin. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene, 167:1-10, 1996.
-
(1996)
Gene
, vol.167
, pp. 1-10
-
-
Sonnhammer, E.L.1
Durbin, R.2
-
24
-
-
0035889690
-
Integrated graphical analysis of protein sequence features predicted from sequence composition
-
E. L. Sonnhammer and J. C. Wootton. Integrated graphical analysis of protein sequence features predicted from sequence composition. Proteins, 45:262-273, 2001.
-
(2001)
Proteins
, vol.45
, pp. 262-273
-
-
Sonnhammer, E.L.1
Wootton, J.C.2
-
25
-
-
0035016852
-
NIFAS: Visual analysis of domain evolution in proteins
-
C. Storm and E. L. Sonnhammer. NIFAS: visual analysis of domain evolution in proteins. Bioinformatics, 17:343-348, 2001.
-
(2001)
Bioinformatics
, vol.17
, pp. 343-348
-
-
Storm, C.1
Sonnhammer, E.L.2
-
26
-
-
0036173130
-
Automated ortholog inference from phylogenetic trees and calculation of orthology reliability
-
C. E. Storm and E. L. Sonnhammer. Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics, 18:92-99, 2002.
-
(2002)
Bioinformatics
, vol.18
, pp. 92-99
-
-
Storm, C.E.1
Sonnhammer, E.L.2
-
27
-
-
0034887573
-
Scale-free behaviour in protein domain networks
-
S. Wuchty. Scale-free behaviour in protein domain networks. Mol. Biol. Evol., 18:1694-1702, 2001.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1694-1702
-
-
Wuchty, S.1
|