Infrared photon echo signatures of hydrogen bond connectivity in the cyclic decapeptide antamanide

Journal of Chemical Physics

Volumn 118, Issue 22, 2003, Pages 9971-9980

  Moran, Andrew M ^a   Park, Seung Min ^a   Mukamel, Shaul ^a  

^a UNIVERSITY OF ROCHESTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION SPECTROSCOPY; COMPUTER SIMULATION; CONFORMATIONS; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; MOLECULAR ORIENTATION; MOLECULAR STRUCTURE; MOLECULAR VIBRATIONS; NITROGEN COMPOUNDS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OPTIMIZATION; PROBABILITY DENSITY FUNCTION;

ANHARMONIC VIBRATIONAL HAMILTONIANS; COHERENT THREE PULSE INFRARED MEASUREMENT; CYCLIC DECAPEPTIDE ANTAMANIDE; DENSITY FUNCTIONAL THEORY; HYDROGEN BOND CONNNECTIVITY;

HYDROGEN BONDS;

EID: 0038609405     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1571527     Document Type: Article

References (46)

1. M. Blackledge, R. Brüschweiler, J. Griesinger, J. Schmidt, P. Xu, and R. Ernst, Biochemistry 32, 10960 (1993).
2. H. Kessler, A. Müller, and K.-H. Pook, Liebigs Ann. Chem. 1989, 903.
3. C. Kessler, H. Griesinger, J. Lautz, A. Müller, W. van Gunsteren, and H. Berendsen, J. Am. Chem. Soc. 110, 3393 (1988).
4. H. Kessler, W. Bermel, A. Müller, and K.-H. Pook, in The Peptides, edited by V. Hruby (Academic, Orlando, 1985), Vol. 7.
5. Z. Madi, C. Griesinger, and R. Ernst, J. Am. Chem. Soc. 112, 2908 (1990).
6. J. Peng, C. Schiffer, P. Xu, W. van Gunsteren, and R. Ernst, J. Biomol. NMR 8, 453 (1996).
7. T. Bremi, R. Brüschweiler, and R. Ernst, J. Am. Chem. Soc. 119, 4272 (1997).
8. T. Bremi and R. Brüschweiler, J. Am. Chem. Soc. 119, 6672 (1997).
9. T. Wieland and H. Faulstich, Crit. Rev. Biochem. 1978, 185.
10. R. Bruschweiler, M. Blackledge, and R. Ernst, J. Biomol. NMR 1, 3 (1996).
11. D. Patel, Biochemistry 12, 667 (1973).
12. W. Burgermeister, T. Wieland, and R. Winkler, Eur. J. Biochem. 44, 311 (1974).
13. S. Krimm and J. Bandekar, J. Adv. Protein Chem. 38, 181 (1986).
14. H. Torii and M. Tasumi, J. Chem. Phys. 96, 3379 (1992).
15. A. C. Scott, Phys. Rep. 217, 1 (1992).
16. R. Kopelman, in Excited States, edited by E. C. Lim (Academic, New York, 1975), Vol. 2.
17. J.-H. Choi, S. Ham, and M. Cho, J. Chem. Phys. 117, 6821 (2002).
18. A. Moran, S.-M. Park, J. Dreyer, and S. Mukamel, J. Chem. Phys. 118, 3651 (2003).
19. A. Moran, J. Dreyer, and S. Mukamel, J. Chem. Phys. 118, 1347 (2003).
20. P. Hamm, H. Lim, and R. Hochstrasser, J. Phys. Chem. B 102, 6123 (1998).
21. G. Chaban, J. Jung, and R. Gerber, J. Chem. Phys. 111, 1823 (1999).
22. S. Gregurick, G. Chaban, and R. Gerber, J. Phys. Chem. A 106, 8696 (2002).
23. S.-M. Park, C. Scheurer, and S. Mukamel, in Femtochemistry and Femtobiology: Ultrafast Dynamics in Molecular Science, edited by A. Douhal (World Scientific, Singapore, 2002).
24. S. Woutersen, R. Pfister, P. Hamm, Y. Mu, D. Kosov, and G. Stock, J. Chem. Phys. 117, 6833 (2002).
25. M. Zanni, M. Asplund, and R. M. Hochstrasser, J. Chem. Phys. 114, 4579 (2001).
26. S. Woutersen, R. Pfister, Y. Mu, D. Kosov, and G. Stock, J. Chem. Phys. 117, 6833 (2002).
27. M. Zanni, S. Gnanakaran, J. Stenger, and R. Hochstrasser, J. Phys. Chem. B 105, 6520 (2001).
28. S. Woutersen and P. Hamm, J. Phys. Chem. B 104, 11316 (2000).
29. P. Hamm, S. Woutersen, and M. Rueping, Helv. Chim. Acta 85, 3883 (2002).
30. J. Bredenbeck, J. Helbing, T. Schrader, W. Zinth, C. Renner, R. Behrendt, L. Moroder, J. Wachtveitl, and P. Hamm, PNAS (2003).
31. B. Brooks, R. Bruccoleri, B. Olafsen, D. States, S. Swaminathan, and M. Karplus, J. Comput. Chem. 4, 187 (1983).
32. R. Brüschweiler, B. Roux, M. Blackledge, C. Griesinger, M. Karplus, and R. R. Ernst, J. Am. Chem. Soc. 114, 2289 (1992).
33. T. Creighton, Proteins: Structures and Molecular Properties (Freeman, New York, 1993).
34. M. J. Frisch, G. W. Trucks, H. B. Schlegel et al., Gaussian 98, Revision A.9, Gaussian, Inc., Pittsburgh, PA (1998).
35. W. Kabsch and C. Sander, Biopolymers 22, 2577 (1983).
36. C. Scheurer, A. Piryatinski, and S. Mukamel, J. Am. Chem. Soc. 123, 3114 (2001).
37. H. Torii and M. Tasumi, J. Raman Spectrosc. 29, 81 (1998).
38. S. Krimm and Y. Abe, Proc. Natl. Acad. Sci. U.S.A. 69, 2788 (1972).
39. W. Moore and S. Krimm, Proc. Natl. Acad. Sci. U.S.A. 72, 4933 (1975).
40. B. Lal and L. Nafie, Biopolymers 21, 2161 (1982).
41. V. Ivanov, A. Miroshnikov, N. Abdullaev, L. Senyavina, S. Arkhipova, N. Uvarova, K. Khalilulina, V. Bystrov, and Y. A. Ovchinnikov, Biochem. Biophys. Res. Commun. 42, 654 (1971).
42. R. M. Hochstrasser, Chem. Phys. 266, 273 (2001).
43. S. Popov, Y. Svirko, and N. Zheludev, Susceptibility Tensors for Nonlinear Optics (Institute of Physics, London, 1995).
44. S. Mukamel, Principles of Nonlinear Optical Spectroscopy (Oxford University Press, New York, 1995).
45. S. Woutersen and P. Hamm, J. Phys.: Condens. Matter 14, 1035 (2002).
46. J. Dreyer, A. Moran, and S. Mukamel, J. Chem. Phys. (to be published).