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Volumn 31, Issue 11, 2003, Pages 2745-2750

Effect of DNA bases and backbone on σ70 holoenzyme binding and isomerization using fork junction probes

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA BINDING PROTEIN; DNA DIRECTED RNA POLYMERASE; HOLOENZYME; RNA POLYMERASE SIGMA 70; SIGMA FACTOR; DNA BASE; ESTER;

EID: 0038606991     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg400     Document Type: Article
Times cited : (12)

References (25)
  • 1
    • 0031779081 scopus 로고    scopus 로고
    • RNA polymerase-promoter interactions: The comings and goings of RNA polymerase
    • deHaseth,P.L., Zupancic,M.L. and Record,M.T.,Jr (1998) RNA polymerase-promoter interactions: the comings and goings of RNA polymerase. J. Bacteriol, 180, 3019-3025.
    • (1998) J. Bacteriol. , vol.180 , pp. 3019-3025
    • deHaseth, P.L.1    Zupancic, M.L.2    Record Jr., M.T.3
  • 3
    • 18344418394 scopus 로고    scopus 로고
    • Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners
    • Helmann,J.D. and deHaseth,P.L. (1999) Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners. Biochemistry, 38, 5959-5967.
    • (1999) Biochemistry , vol.38 , pp. 5959-5967
    • Helmann, J.D.1    deHaseth, P.L.2
  • 4
    • 0026019013 scopus 로고
    • Hierarchies of base pair preferences in the P22 ant promoter
    • Moyle,H., Waldburger,C. and Susskind,M.M. (1991) Hierarchies of base pair preferences in the P22 ant promoter. J. Bacteriol, 173, 1944-1950.
    • (1991) J. Bacteriol. , vol.173 , pp. 1944-1950
    • Moyle, H.1    Waldburger, C.2    Susskind, M.M.3
  • 5
    • 0020361384 scopus 로고
    • Sequence determinants of promoter activity
    • Youderian,P., Bouvier,S. and Susskind,M.M. (1982) Sequence determinants of promoter activity. Cell, 30, 843-853.
    • (1982) Cell , vol.30 , pp. 843-853
    • Youderian, P.1    Bouvier, S.2    Susskind, M.M.3
  • 6
    • 0023644795 scopus 로고
    • Constitutive function of a positively regulated promoter reveals new sequences essential for activity
    • Keilty,S. and Rosenberg,M. (1987) Constitutive function of a positively regulated promoter reveals new sequences essential for activity. J. Biol. Chem., 262, 6389-6395.
    • (1987) J. Biol. Chem. , vol.262 , pp. 6389-6395
    • Keilty, S.1    Rosenberg, M.2
  • 7
    • 0027761839 scopus 로고
    • A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase
    • Ross,W., Gosink,K.K., Salomon,J., Igarashi,K., Zou,C., Ishihama,A., Severinov,K. and Gourse,R.L. (1993) A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. Science, 262, 1407-1413.
    • (1993) Science , vol.262 , pp. 1407-1413
    • Ross, W.1    Gosink, K.K.2    Salomon, J.3    Igarashi, K.4    Zou, C.5    Ishihama, A.6    Severinov, K.7    Gourse, R.L.8
  • 9
    • 0025369026 scopus 로고
    • Topography of intermediates in transcription initiation of E.coli
    • Schickor,P., Metzger,W., Werel,W., Lederer,H. and Heumann,H. (1990) Topography of intermediates in transcription initiation of E.coli. EMBO J., 9, 2215-2220.
    • (1990) EMBO J. , vol.9 , pp. 2215-2220
    • Schickor, P.1    Metzger, W.2    Werel, W.3    Lederer, H.4    Heumann, H.5
  • 10
    • 0025785249 scopus 로고
    • Development of RNA polymerase-promoter contacts during open complex formation
    • Mecsas,J., Cowing,D.W. and Gross,C.A. (1991) Development of RNA polymerase-promoter contacts during open complex formation. J. Mol. Biol., 220, 585-597.
    • (1991) J. Mol. Biol. , vol.220 , pp. 585-597
    • Mecsas, J.1    Cowing, D.W.2    Gross, C.A.3
  • 11
    • 0035979258 scopus 로고    scopus 로고
    • Function of the bacterial TATAAT -10 element as single-stranded DNA during RNA polymerase isomerization
    • Fenton,M.S. and Gralla,J.D. (2001) Function of the bacterial TATAAT -10 element as single-stranded DNA during RNA polymerase isomerization. Proc. Natl Acad. Sci. USA, 98, 9020-9025.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9020-9025
    • Fenton, M.S.1    Gralla, J.D.2
  • 12
    • 0034633951 scopus 로고    scopus 로고
    • Sequence determinants for the recognition of the fork junction DNA containing the -10 region of promoter DNA by E. coli RNA polymerase
    • Matlock,D.L. and Heyduk,T. (2000) Sequence determinants for the recognition of the fork junction DNA containing the -10 region of promoter DNA by E. coli RNA polymerase. Biochemistry, 39, 12274-12283.
    • (2000) Biochemistry , vol.39 , pp. 12274-12283
    • Matlock, D.L.1    Heyduk, T.2
  • 13
    • 0032578471 scopus 로고    scopus 로고
    • Promoter opening via a DNA fork junction binding activity
    • Guo,Y. and Gralla,J.D. (1998) Promoter opening via a DNA fork junction binding activity. Proc. Natl Acad. Sci. USA, 95, 11655-11660.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 11655-11660
    • Guo, Y.1    Gralla, J.D.2
  • 14
    • 0033485479 scopus 로고    scopus 로고
    • Adenines at -11, -9 and -8 play a key role in the binding of Bacillus subtilis Esigma(A) RNA polymerase to -10 region single-stranded DNA
    • Qiu,J. and Helmann,J.D. (1999) Adenines at -11, -9 and -8 play a key role in the binding of Bacillus subtilis Esigma(A) RNA polymerase to -10 region single-stranded DNA. Nucleic Acids Res., 27, 4541-4546.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4541-4546
    • Qiu, J.1    Helmann, J.D.2
  • 15
    • 0030915128 scopus 로고    scopus 로고
    • Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide
    • Marr,M.T. and Roberts,J.W. (1997) Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide. Science, 276, 1258-1260.
    • (1997) Science , vol.276 , pp. 1258-1260
    • Marr, M.T.1    Roberts, J.W.2
  • 16
    • 0035910043 scopus 로고    scopus 로고
    • A "master" in base unpairing during isomerization of a promoter upon RNA polymerase binding
    • Lim,H.M., Lee,H.J., Roy,S. and Adhya,S. (2001) A "master" in base unpairing during isomerization of a promoter upon RNA polymerase binding. Proc. Natl Acad. Sci. USA, 98, 14849-14852.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 14849-14852
    • Lim, H.M.1    Lee, H.J.2    Roy, S.3    Adhya, S.4
  • 17
    • 0034161515 scopus 로고    scopus 로고
    • Escherichia coli promoter opening and -10 recognition: Mutational analysis of sigma70
    • Fenton,M.S., Lee,S.J. and Gralla,J.D. (2000) Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70. EMBO J., 19, 1130-1137.
    • (2000) EMBO J. , vol.19 , pp. 1130-1137
    • Fenton, M.S.1    Lee, S.J.2    Gralla, J.D.3
  • 18
    • 0035943648 scopus 로고    scopus 로고
    • Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes
    • Tomsic,M., Tsujikawa,L., Panaghie,G., Wang,Y., Azok,J. and deHaseth,P.L. (2001) Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes. J. Biol. Chem., 276, 31891-31896.
    • (2001) J. Biol. Chem. , vol.276 , pp. 31891-31896
    • Tomsic, M.1    Tsujikawa, L.2    Panaghie, G.3    Wang, Y.4    Azok, J.5    deHaseth, P.L.6
  • 19
    • 0031581917 scopus 로고    scopus 로고
    • Region 1 of sigma70 is required for efficient isomerization and initiation of transcription by Escherichia coli RNA polymerase
    • Wilson,C. and Dombroski,A.J. (1997) Region 1 of sigma70 is required for efficient isomerization and initiation of transcription by Escherichia coli RNA polymerase. J. Mol. Biol., 267, 60-74.
    • (1997) J. Mol. Biol. , vol.267 , pp. 60-74
    • Wilson, C.1    Dombroski, A.J.2
  • 20
    • 0033168678 scopus 로고    scopus 로고
    • A fork junction DNA-protein switch that controls promoter melting by the bacterial enhancer-dependent sigma factor
    • Guo,Y., Wang,L. and Gralla,J.D. (1999) A fork junction DNA-protein switch that controls promoter melting by the bacterial enhancer-dependent sigma factor. EMBO J., 18, 3736-3745.
    • (1999) EMBO J. , vol.18 , pp. 3736-3745
    • Guo, Y.1    Wang, L.2    Gralla, J.D.3
  • 21
    • 0024355282 scopus 로고
    • A mutant Escherichia coli sigma 70 subunit of RNA polymerase with altered promoter specificity
    • Gardella,T., Moyle,H. and Susskind,M.M. (1989) A mutant Escherichia coli sigma 70 subunit of RNA polymerase with altered promoter specificity. J. Mol. Biol., 206, 579-590.
    • (1989) J. Mol. Biol. , vol.206 , pp. 579-590
    • Gardella, T.1    Moyle, H.2    Susskind, M.M.3
  • 22
    • 0024371540 scopus 로고
    • Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase
    • Siegele,D.A., Hu,J.C., Walter,W.A. and Gross,C.A. (1989) Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase. J. Mol. Biol., 206, 591-603.
    • (1989) J. Mol. Biol. , vol.206 , pp. 591-603
    • Siegele, D.A.1    Hu, J.C.2    Walter, W.A.3    Gross, C.A.4
  • 23
    • 0030576519 scopus 로고    scopus 로고
    • Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase
    • Roberts,C.W. and Roberts,J.W. (1996) Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase. Cell, 86, 495-501.
    • (1996) Cell , vol.86 , pp. 495-501
    • Roberts, C.W.1    Roberts, J.W.2
  • 24
    • 0025688346 scopus 로고
    • Promoter selectivity of Escherichia coli RNA polymerase: Effect of base substitutions in the promoter -35 region on promoter strength
    • Kobayashi,M., Nagata,K. and Ishihama,A. (1990) Promoter selectivity of Escherichia coli RNA polymerase: effect of base substitutions in the promoter -35 region on promoter strength. Nucleic Acids Res., 18, 7367-7372.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 7367-7372
    • Kobayashi, M.1    Nagata, K.2    Ishihama, A.3
  • 25
    • 0020445320 scopus 로고
    • Mutation-induced changes in RNA polymerase-lac ps promoter interactions
    • Stefano,J.E. and Gralla,J.D. (1982) Mutation-induced changes in RNA polymerase-lac ps promoter interactions. J. Biol. Chem., 257, 13924-13929.
    • (1982) J. Biol. Chem. , vol.257 , pp. 13924-13929
    • Stefano, J.E.1    Gralla, J.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.