Phylogeny and biogeography of pacific Rubus subgenus Idaeobatus (Rosaceae) species: Investigating the origin of the endemic Hawaiian raspberry R. macraei

Pacific Science

Volumn 57, Issue 2, 2003, Pages 181-197

  Morden, Clifford W ^a   Gardner, Donald E ^b   Weniger, Dana A ^a  

^a UNIVERSITY OF HAWAII   (United States)

^b U S GEOLOGICAL SURVEY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOGRAPHY; CONVERGENT EVOLUTION; ENDEMISM; PHYLOGENY;

HAWAII; UNITED STATES;

HAWAIIA; ROSACEAE; RUBUS GLAUCUS; RUBUS HAWAIENSIS; RUBUS MACRAEI; RUBUS SPECTABILIS; RUBUS URSINUS;

EID: 0038527232     PISSN: 00308870     EISSN: None     Source Type: Journal    
DOI: 10.1353/psc.2003.0018     Document Type: Article

References (66)

1. Abrams, L. 1944. Illustrated flora of the Pacific states Washington, Oregon, and California. Stanford University Press, Stanford, California.
2. Alice, L. 2002. Evolutionary relationships in Rubus (Rosaceae) based on molecular data. Acta Hortic. (The Hague) 585:79-83.
3. Alice, L., and C. S. Campbell. 1999. Phylogeny of Rubus (Rosaceae) based on nuclear ribosomal DNA internal transcribed spacer region sequences. Am. J. Bot. 86:81-97.
4. Beeks, R. M. 1955. Improvement in the squash technique for plant chromosomes. Aliso 3:131-134.
5. Berger, A. J. 1972. Hawaiian birdlife. University of Hawai'i Press, Honolulu.
6. Bremer, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42:795-803.
7. Brown, S. W. 1943. The origin and nature of variability in the Pacific coast blackberries (Rubus ursinus Cham. et Schlecht. and R. lemurum sp. nov.). Am. J. Bot. 30:686-697.
8. Carlquist, S. 1974. Island biology. Columbia University Press, New York.
9. Carson, H. L., and D. A. Clague. 1995. Geology and biogeography of the Hawaiian Islands. Pages 14-29 in W. L. Wagner and V. A. Funk, eds. Hawaiian biogeography: Evolution on a hot spot archipelago. Smithsonian Institution Press, Washington, D.C.
10. Clark, L. G., W. Zhang, and J. F. Wendel, 1995. A phylogeny of the grass family (Poaceae) based on ndbF sequence data. Syst. Bot. 20:436-460.
11. Conant, S., R. Clapp, L. Hiruki, and B. Choy. 1991. A new tern (Sterna) breeding record for Hawaii. Pac. Sci. 45:348-354.
12. Cousineau, J. C., and D. J. Donnelly. 1989. Identification of raspberry cultivars in vivo using isoenzyme analysis. HortScience 24:490-492.
13. Darrow, G. M. 1955. Blackberry-raspberry hybrids. J. Hered. 46:67-71.
14. Doyle, J. J., and J. L. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19:11-15.
15. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
16. Focke, W. O. 1910. Species Ruborum monographiae generis Rubi prodromus. Bibl. Bot. 17:1-120.
17. Focke, W. O. 1911. Species Ruborum monographiae generis Rubi prodromus. Bibl. Bot. 17:121-223.
18. Focke, W. O. 1914. Species Ruborum monographiae generis Rubi prodromus. Bibl. Bot. 17:1-274.
19. Fosberg, F. R. 1948. Derivation of the flora of the Hawaiian Islands. Pages 107-119 in E. C. Zimmerman, ed. Insects of Hawaii. Vol. 1. University of Hawai'i Press, Honolulu.
20. Graham, J., and R. J. McNicol. 1995. An examination of the ability of RAPD markers to determine the relationships within and between Rubus species. Theor. Appl. Genet. 90:1128-1132.
21. Gu, Y., C. M. Zhao, W. Jin, and W. L. Li. 1993. Evaluation of Rubus germplasm resources in China. Acta Hortic. (The Hague) 352:317-324.
22. Gwinner, E. 1990. Bird migration: Physiology and ecophysiology. Springer-Verlag, Berlin.
23. Haskell, G., and J. B. Garrie. 1966. Finger-printing raspberry cultivars by empirical paper chromatography. J. Sci. Food Agric. 17:189-192.
24. Hedrick, U. P. 1925. The small fruits of New York. J. B. Lyon Co., Albany, New York.
25. Hickman, J. C. 1993. The Jepson manual of higher plants of California. University of California Press, Berkeley.
26. Hillebrand, W. 1888. Flora of the Hawaiian Islands: A description of their phanerogams and vascular cryptogams. Carl Winter, University-Bookseller, Heidelberg.
27. Hiratsuka, J., S. Hiroaki, R. Whittier, T. Ishibashi, M. Sakamoto, M. Mori, Y. Kondo, Y. Honji, C. Sun, B. Meng, Y. Li, A. Kanno, Y. Nishizawa, A. Hirai, K. Shinozaki, and M. Sugiura. 1989. The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plasmid DNA inversion during evolution of cereals. Mol. Gen. Genet. 217:185-194.
28. Howarth, D. G., D. E. Gardner, and C. W. Morden. 1997. Phylogeny of Rubus sub-genus Idaeobatus (Rosaceae) and its implications toward colonization of the Hawaiian Islands. Syst. Bot. 22:433-441.
29. Hummer, K. E. 1996. Rubus diversity. Hort-Science 31:182-183.
30. Iwatsubo, Y., N. Naruhashi, and H. E. Weber. 1995. Chromosome numbers of European blackberries (Rubus subg. Rubus, Rosaceae). Plant Syst. Evol. 198:143-149.
31. Jennings, D. L. 1988. Raspberries and blackberries: Their breeding, diseases and growth. Academic Press, London.
32. Jennings, D. L. 1995. Raspberries and blackberries-Rubus (Rosaceae). Pages 429-434 in J. Smartt and N. W. Simmonds, eds. Evolution of crop plants. 2nd ed. Longman Scientific and Technical, New York.
33. Jennings, D. L., and E. Carmichael. 1980. Anthocyanin variation in the genus Rubus L. New Phytol. 84:503-513.
34. Jepson, W. L. 1925. A manual of the flowering plants of California. University of California Press, Berkeley.
35. Johnson, O. W., M. L. Morton, P. L. Bruner, and P. M. Johnson. 1989. Fat cyclicity, predicted migratory flight ranges, and features of wintering behavior in Pacific golden-plovers. Condor 91:156-177.
36. Kim, K. J., and R. K. Jansen. 1995. ndbF sequence evolution and the major clades in the sunflower family. Proc. Natl. Acad. Sci. U.S.A. 92:10379-10383.
37. Kloeckner, P. D., J. M. Williams, and T. C. Williams. 1982. Radar and visual observations of transpacific migrants. 'Elepaio 42:77-80.
38. Kraft, T., H. Nybom, and G. Werlemark, 1996. DNA fingerprint variation in some blackberry species (Rubus subg. Rubus, Rosaceae). Plant. Syst. Evol. 199:93-108.
39. Lu, L.-T. 1983. A study on the genus Rubus of China. Acta Phytotaxon. Sin. 21:13-25.
40. Maddison, W. P., and D. R. Maddison. 1992. MacClade: Analysis of phylogeny and character evolution. Sinauer Associates, Sunderland, Massachusetts.
41. Morden, C. W., V. Caraway, and T. J. Motley. 1996. Development of a DNA library for native Hawaiian plants. Pac. Sci. 50:324-335.
42. Morgan, D. R., D. E., Soltis, and K. R. Robertson. 1994. Systematic and evolutionary implications of rbcL sequence variation in Rosaceae. Am. J. Bot. 81:890-903.
43. Munz, P. A. 1974. A flora of southern California. University of California Press, Berkeley.
44. Munz, P. A., and D. D. Keck. 1959. A California flora. University of California Press, Berkeley.
45. Neyland, R., and L. E. Urbatsch. 1996. Phylogeny of subfamily Epidendroideae (Orchidaceae) inferred from ndbF chloroplast gene sequences. Am. J. Bot. 83:1195-1206.
46. Nybom, H., and H. K. Hall. 1991. Minisatellite DNA "fingerprints" can distinguish Rubus cultivars and estimate their degree of relatedness. Euphytica 53:107-114.
47. Nybom, H., and B. A. Schaal. 1990. DNA "fingerprints" reveal genotypic distributions in natural populations of blackberries and raspberries (Rubus, Rosaceae). Am. J. Bot. 77:883-888.
48. Nybom, H., S. H. Rogstad, and B. A. Schaal. 1990. Genetic variation detected by use of the M13 "DNA fingerprint" probe in Malus, Prunus, and Rubus (Rosaceae). Theor. Appl. Genet. 79:153-156.
49. Olmstead, R. G., and P. A. Reeves. 1995. Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndbF sequences. Ann. Mo. Bot. Gard. 82:176-193.
50. Olmstead, R. G., and J. A. Sweere. 1994. Combining data in phylogenetic systematics: An empirical approach using three molecular data sets in the Solanaceae. Syst. Biol. 43:467-481.
51. Olmstead, R. G., J. A. Sweere, and K. H. Wolfe. 1993. Ninety extra nucleotides in ndbF gene of tobacco chloroplast DNA: A summary of revisions to the 1986 genome sequence. Plant Mol. Biol. 22:1191-1193.
52. Randell, R. A. 2000. Hybridization between naturalized and endemic Rubus (Rosaceae) species in Hawai'i. M.S. thesis, University of Hawai'i at Mānoa, Honolulu.
53. Randell, R. A., and C. W. Morden. 1999. Hawaiian plant DNA library II: Endemic, indigenous, and introduced species. Pac. Sci. 53:401-417.
54. Sambrook, J., E. F. Fritsch, and R. Maniatis. 1989. Molecular cloning: A laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
55. Sanger, F., S. Necklen, and A. R. Coulson. 1977. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. U.S.A. 74:5463-5467.
56. Scotland, R. W., J. A. Sweere, P. A. Reeves, and R. G. Olmstead. 1995. Higher level systematics of Acanthaceae determined by chloroplast DNA sequences. Am. J. Bot. 82:266-275.
57. Smith, J. F., J. C. Wolfram, K. D. Brown, C. L. Carroll, and D. S. Denton. 1997. Tribal relationships in the Gesneriaceae: Evidence from DNA sequences of the chloroplast gene ndbF. Ann. Mo. Bot. Gard. 84:50-66.
58. Sugiura, M. 1989. The chloroplast chromosomes in land plants. Annu. Rev. Cell Biol. 5:51-70.
59. Swofford, D. L. 1996. Phylogenetic analysis using parsimony (and other methods). Sinauer Associates, Sunderland, Massachusetts.
60. Terry, R. G., G. K. Brown, and R. G. Olmstead. 1997. Examination of subfamilial phylogeny in Bromeliaceae using comparative sequencing of the plastid locus ndbF. Am. J. Bot. 84:664-670.
61. Thompson, M. M. 1995. Chromosome numbers of Rubus species at the National Clonal Germplasm Repository. HortScience 30:1447-1452.
62. Thompson, M. M. 1997. Survey of chromosome numbers in Rubus (Rosaceae: Rosoideae). Ann. Mo. Bot. Gard. 84:128-164.
63. Wagner, W. L., D. R. Herbst, and S. H. Sohmer. 1999. Manual of the flowering plants of Hawai'i. Rev. ed. University of Hawai'i Press and Bishop Museum Press, Honolulu.
64. Waugh, R., W. T. G. Van De Ven, M. S. Phillips, and W. Powell. 1990. Chloroplast DNA diversity in the genus Rubus (Rosaceae) revealed by southern hybridization. Plant. Syst. Evol. 172:65-75.
65. Williams, T. C., and J. M. Williams. 1988. Radar and visual observations of autumnal (southward) shorebird migrations of Guam. Auk 105:460-466.
66. Wolfe, K. H., W. H. Li, and P. M. Sharp. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. U.S.A. 84:9054-9058.