The xthA gene product of Archaeoglobus fulgidus is an unspecific DNase

European Journal of Biochemistry

Volumn 270, Issue 8, 2003, Pages 1838-1849

  Miertzschke, Mandy ^a   Greiner Stöffele, Thomas ^a  

^a UNIVERSITY OF LEIPZIG   (Germany)

Author keywords

Archaeoglobus fulgidus; DNase; Exonuclease III; Thermostable; xthA

Indexed keywords

ARGININE; DEOXYRIBONUCLEASE; DISULFIDE; EXODEOXYRIBONUCLEASE III; GENE PRODUCT; GLUTATHIONE REDUCTASE; ISOLEUCINE; LEUCINE; THIOREDOXIN REDUCTASE; TRANSFER RNA;

AMINO ACID SEQUENCE; ARCHAEOGLOBUS FULGIDUS; ARTICLE; BACTERIAL STRAIN; CYTOSOL; DATA BASE; DNA VECTOR; GENE ISOLATION; HOST; ION EXCHANGE CHROMATOGRAPHY; MOLECULAR CLONING; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; PROTEIN PURIFICATION; SAMPLING; SEQUENCE HOMOLOGY; SOLUBILITY; TEMPERATURE;

AMINO ACID SEQUENCE; ARCHAEOGLOBUS FULGIDUS; BASE SEQUENCE; CATIONS, DIVALENT; DEOXYRIBONUCLEASES; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PLASMIDS; PROTEIN CONFORMATION; RNA, ARCHAEAL; RNA, TRANSFER; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

ARCHAEA; ARCHAEOGLOBUS; ARCHAEOGLOBUS FULGIDUS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0038408981     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1033.2003.03548.x     Document Type: Article

References (30)

1. Richardson, C.C. & Kornberg, A. (1964) A deoxyribonucleic acid phosphatase-exonuclease from Escherichia coli - I. Purification of the enzyme and characterization of the phosphatase activity. J. Biol. Chem. 239, 242-250.
2. Brutlag, D. & Kornberg, A. (1972) Enzymatic synthesis of deoxyribonucleic acid. 36. A proofreading function for the 3′ leads to 5′ exonuclease activity in deoxyribonucleic acid polymerases. J. Biol. Chem. 247, 241-248.
3. Rogers, S.G. & Weiss, B. (1980) Exonuclease III of Escherichia coli K-12, an AP endonuclease. Methods Enzymol. 65, 201-211.
4. Kow, Y.W. & Wallace, S.S. (1985) Exonuclease III recognizes urea residues in oxidized DNA. Proc. Natl Acad. Sci. USA 82, 8354-8358.
5. Kuo, C.F., Mol, C.D., Thayer, M.M., Cunningham, R.P. & Tainer, J.A. (1994) Structure and function of the DNA repair enzyme exonuclease III from E. coli. Ann. NY Acad. Sci. 726, 223-234.
6. Hoheisel, J.D. (1993) On the activities of Escherichia coli exonuclease III. Anal. Biochem. 209, 238-246.
7. Tomb, J.F. & Barcak, G.J. (1989) Regulating the 3′-5′-activity of exonuclease III by varying the sodium chloride concentration. Biotechniques 7, 932-933.
8. Trimble, W.S. & Hozumi, N. (1987) Deletion analysis of the c-Ha-ras oncogene promoter. FEBS Lett. 219, 70-74.
9. DiRita, V.J. & Gelvin, S.B. (1987) Deletion analysis of the mannopine synthase gene promoter in sunflower crown gall tumors and Agrobacterium tumefaciens. Mol. General Genet. 207, 233-241.
10. Clark, D. & Henikoff, S. (1996) Ordered deletions using exonuclease III. Methods Mol. Biol. 57, 139-147.
11. Henikoff, S. (1984) Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28, 351-359.
12. Puapaiboon, U., Jai-nhuknan, J. & Cowan, J.A. (2000) Rapid and direct sequencing of double-stranded DNA using exonuclease III and MALDI-TOF MS. Anal. Chem. 72, 3338-3341.
13. Fromenty, B., Demeilliers, C., Mansouri, A. & Pessayre, D. (2000) Escherichia coli exonuclease III enhances long PCR amplification of damaged DNA templates. Nucleic Acids Res. 28, E50.
14. Koltermann, A., Kettling, U. & Eigen, M. (2002) Verfahren zur Herstellung von Biopolymeren mit veränderten Eigenschaften. [DE 19953854].
15. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
16. Ankenbauer, W., Laue, F., Sobek, H. & Greif, M. (2000) Thermostable enzyme promoting the fidelity of thermostable DNA polymerases - for improvement of nucleic acid synthesis and amplification in vitro. [WO2001023583].
17. Brinkmann, U., Mattes, R.E. & Buckel, P. (1989) High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product. Gene 85, 109-114.
18. Laemmli, U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
19. Sambrook, J. & Russell, D.W. (2001) Molecular Cloning. A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
20. Klenk, H.P., Clayton, R.A., Tomb, J.F., White, O., Nelson, K.E., Ketchum, K.A., Dodson, R.J., Gwinn, M., Hickey, E.K., Peterson, J.D., Richardson, D.L., Kerlavage, A.R., Graham, D.E, Kyrpides, N.C., Fleischmann, R.D., Quackenbush, J., Lee, N.H., Sutton, G.G., Gill, S., Kirkness, E.F., Dougherty, B.A., McKenney, K., Adams, M.D., Loftus, B. & Venter, J.C. (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390, 364-370.
21. Mol, C.D., Kuo, C.F., Thayer, M.M., Cunningham, R.P. & Tainer, J.A. (1995) Structure and function of the multifunctional DNA-repair enzyme exonuclease III. Nature 374, 381-386.
22. Peitsch, M.C. (1996) ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling. Biochem. Soc. Trans. 24, 274-279.
23. Rietsch, A. & Beckwith, J. (1998) The genetics of disulfide bond metabolism. Annu. Rev. Genet. 32, 163-184.
24. Boeke, J.D. & Model, P. (1982) A prokaryotic membrane anchor sequence: carboxyl terminus of bacteriophage f1 gene III protein retains it in the membrane. Proc. Natl Acad. Sci. USA 79, 5200-5204.
25. Bolla, J.M., Lazdunski, C., Inouye, M. & Pages, J.M. (1987) Export and secretion of overproduced OmpA-beta-lactamase in Escherichia coli. FEBS Lett. 224, 213-218.
26. Prinz, W.A., Aslund, F., Holmgren, A. & Beckwith, J. (1997) The role of the thioredoxin and glutaredoxin pathways in reducing protein disulfide bonds in the Escherichia coli cytoplasm. J. Biol. Chem. 272, 15661-15667.
27. Guo, H. & Wu, R. (1982) New rapid methods for DNA sequencing based in exonuclease III digestion followed by repair synthesis. Nucleic Acids Res. 10, 2065-2084.
28. Beernink, P.T., Segelke, B.W., Hadi, M.Z., Erzberger, J.P., Wilson, D.M. III, & Rupp, B. (2001) Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: implications for the catalytic mechanism. J. Mol. Biol. 307, 1023-1034.
29. Jones, S.J., Worrall, A.F. & Connolly, B.A. (1996) Site-directed mutagenesis of the catalytic residues of bovine pancreatic deoxyribonuclease I. J. Mol. Biol. 264, 1154-1163.
30. 420 in Archaeoglobus fulgidus. Arch. Microbiol. 152, 362-368.